BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0057.p (461 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774102.1| two-component hybrid sensor and regulator [Brad... 839 0.0 ref|YP_001207910.1| putative two-component sensor histidine kina... 821 0.0 ref|YP_001237851.1| signal transduction histidine kinase [Bradyr... 814 0.0 ref|YP_571005.1| periplasmic sensor signal transduction histidin... 795 0.0 ref|YP_780357.1| periplasmic sensor signal transduction histidin... 794 0.0 >ref|NP_774102.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] dbj|BAC52727.1| two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110] Length = 462 Score = 839 bits (2168), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/462 (87%), Positives = 438/462 (94%), Gaps = 1/462 (0%) Query: 1 MSTLDSGLTLIKNASQRVSKANGWMGNAFKSWMPTGLYARALLIMIVPMVILQTVVAFVF 60 MST+D+GLTL+K+A+ RVS ANGWMGNAFK WMPTGLYARALLIMIVPMVILQ+VVAFVF Sbjct: 1 MSTIDTGLTLLKSAAGRVSAANGWMGNAFKGWMPTGLYARALLIMIVPMVILQSVVAFVF 60 Query: 61 MERHWNTVTRRLSAAVVSDIAALIDVYKSYPQDKDRAQLRRIAQ-KLQLVVDFLPAGDMP 119 MERHWNTVTRRLSAAVV DIAALID+YK YPQDKDR Q+RRIAQ +L LVVDFLPAGDMP Sbjct: 61 MERHWNTVTRRLSAAVVQDIAALIDIYKGYPQDKDRDQIRRIAQQRLGLVVDFLPAGDMP 120 Query: 120 PPGPKPFFSLLDQTLSVQLGRQISRPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYA 179 PPGPKPFFSLLDQTLSVQLGRQI R FWIDTVG+SNLVEIR+QLDD+VMR+FAQRSAAYA Sbjct: 121 PPGPKPFFSLLDQTLSVQLGRQIGRSFWIDTVGRSNLVEIRIQLDDAVMRVFAQRSAAYA 180 Query: 180 SNSEIFIFWMLGTSTILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR 239 SNSEIF+FWM+GTS+ILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR Sbjct: 181 SNSEIFLFWMVGTSSILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR 240 Query: 240 RAAQAFIEMKARVERSIEQRTAMLAGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDE 299 RAA AF+EMK+R+ER++EQRTAMLAGVSHDLRTILTRFKLELALIG+ PE++ MRKDVDE Sbjct: 241 RAAVAFLEMKSRIERTMEQRTAMLAGVSHDLRTILTRFKLELALIGDSPELEGMRKDVDE 300 Query: 300 MSMMLEDYLAFARGDSGEVAQPTDMALALEELRSDAERHGHTATVAFHGLPVVTVKPASF 359 MSMMLEDYLAFARGDSGE +QPTDMA ALEELRSDAERHGH ATVAF+GLPVVTVKPASF Sbjct: 301 MSMMLEDYLAFARGDSGEQSQPTDMAQALEELRSDAERHGHAATVAFNGLPVVTVKPASF 360 Query: 360 KRCLANLVSNAARHANTISITGHRDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARN 419 KRCLANLV+NAAR+ +I+ITG RDHRYL VTVDDDGPGIPA +REEVFKPFLRLD+ARN Sbjct: 361 KRCLANLVTNAARYGKSIAITGQRDHRYLTVTVDDDGPGIPAHLREEVFKPFLRLDNARN 420 Query: 420 QDEGGTGLGLAIARDIARSHGGDIMLSESPMGGLRAVVRVPV 461 QDEGGTGLGLAIARDIARSHGGDI L +SPMGGLRA VR+PV Sbjct: 421 QDEGGTGLGLAIARDIARSHGGDITLGDSPMGGLRASVRIPV 462 >ref|YP_001207910.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. ORS 278] emb|CAL79695.1| putative two-component sensor histidine kinase [Bradyrhizobium sp. ORS 278] Length = 467 Score = 821 bits (2120), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/462 (84%), Positives = 434/462 (93%), Gaps = 1/462 (0%) Query: 1 MSTLDSGLTLIKNASQRVSKANGWMGNAFKSWMPTGLYARALLIMIVPMVILQTVVAFVF 60 M+TLD+GLTLI+ AS+RVS+AN +GNAFK WMPTGLYARALLIMIVPMVILQTVVA VF Sbjct: 6 MTTLDTGLTLIRTASRRVSRANSIVGNAFKGWMPTGLYARALLIMIVPMVILQTVVAGVF 65 Query: 61 MERHWNTVTRRLSAAVVSDIAALIDVYKSYPQDKDRAQLRRIAQ-KLQLVVDFLPAGDMP 119 MERHWNTVTRRLSAAVV D+AALID+YK YPQDKDR LRRIAQ +L LVVDFLPAGDMP Sbjct: 66 MERHWNTVTRRLSAAVVQDVAALIDIYKGYPQDKDRTMLRRIAQQRLNLVVDFLPAGDMP 125 Query: 120 PPGPKPFFSLLDQTLSVQLGRQISRPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYA 179 PPGPKPFF+LLDQ+LS Q+GRQISRP+WIDTVG+SNLVEIR+ LDD+VMR+FAQR AAYA Sbjct: 126 PPGPKPFFNLLDQSLSSQIGRQISRPYWIDTVGRSNLVEIRIALDDAVMRVFAQRGAAYA 185 Query: 180 SNSEIFIFWMLGTSTILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR 239 SN++IF+FWM+GTS+ILLIV+VLFLRNQIKPILRLADAAESFGKGRE PNFRPRGAREVR Sbjct: 186 SNTDIFLFWMVGTSSILLIVSVLFLRNQIKPILRLADAAESFGKGREVPNFRPRGAREVR 245 Query: 240 RAAQAFIEMKARVERSIEQRTAMLAGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDE 299 RAA AF+EMKAR+ER++EQRTAMLAGVSHDLRTILTRFKLELAL+G+ PEIDAMRKDVDE Sbjct: 246 RAAHAFLEMKARIERAMEQRTAMLAGVSHDLRTILTRFKLELALLGDSPEIDAMRKDVDE 305 Query: 300 MSMMLEDYLAFARGDSGEVAQPTDMALALEELRSDAERHGHTATVAFHGLPVVTVKPASF 359 MS MLEDYLAFARGD+GE+AQPTD++ ALEELRSDAER+GH+ATV+FHGLPVVTVKP + Sbjct: 306 MSHMLEDYLAFARGDNGEIAQPTDISNALEELRSDAERNGHSATVSFHGLPVVTVKPQAL 365 Query: 360 KRCLANLVSNAARHANTISITGHRDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARN 419 KRCL NLVSNAARHA+ I+ITGHRDHRYL +TVDDDGPGIPA MREEVFKPFLRLDDARN Sbjct: 366 KRCLGNLVSNAARHADAIAITGHRDHRYLTITVDDDGPGIPAAMREEVFKPFLRLDDARN 425 Query: 420 QDEGGTGLGLAIARDIARSHGGDIMLSESPMGGLRAVVRVPV 461 QDEGGTGLGLAIARDIARSHGGDI L +SPMGGLRA VR+PV Sbjct: 426 QDEGGTGLGLAIARDIARSHGGDITLGDSPMGGLRASVRIPV 467 >ref|YP_001237851.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] gb|ABQ33945.1| signal transduction histidine kinase [Bradyrhizobium sp. BTAi1] Length = 462 Score = 814 bits (2102), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/462 (83%), Positives = 432/462 (93%), Gaps = 1/462 (0%) Query: 1 MSTLDSGLTLIKNASQRVSKANGWMGNAFKSWMPTGLYARALLIMIVPMVILQTVVAFVF 60 M+TLD+GLTLI+ AS+RVS+ N +GNAFK WMPTGLYARALLIMIVPMVILQTVVA VF Sbjct: 1 MTTLDTGLTLIRTASRRVSRVNSIVGNAFKGWMPTGLYARALLIMIVPMVILQTVVAGVF 60 Query: 61 MERHWNTVTRRLSAAVVSDIAALIDVYKSYPQDKDRAQLRRIAQ-KLQLVVDFLPAGDMP 119 MERHWNTVTRRLSAAVV D+AALI++YK YPQDKDR LRRIAQ +L LVVDFLPAGDMP Sbjct: 61 MERHWNTVTRRLSAAVVQDVAALIEIYKGYPQDKDRTTLRRIAQQRLNLVVDFLPAGDMP 120 Query: 120 PPGPKPFFSLLDQTLSVQLGRQISRPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYA 179 PPGPKPFF+LLDQ+LS Q+GRQISRPFWIDTVG+SNLVEIR+ LDD+VMR+FAQR AAYA Sbjct: 121 PPGPKPFFNLLDQSLSSQIGRQISRPFWIDTVGRSNLVEIRIALDDAVMRVFAQRGAAYA 180 Query: 180 SNSEIFIFWMLGTSTILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR 239 SN++IF+FWM+GTS+ILLIV+VLFLRNQIKPILRLADAAESFGKGRE NFRPRGAREVR Sbjct: 181 SNTDIFLFWMVGTSSILLIVSVLFLRNQIKPILRLADAAESFGKGREVHNFRPRGAREVR 240 Query: 240 RAAQAFIEMKARVERSIEQRTAMLAGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDE 299 RAA AF+EMK+R+ER++EQRTAMLAGVSHDLRTILTRFKLELAL+G+ PEIDAMRKDVDE Sbjct: 241 RAAHAFLEMKSRIERAMEQRTAMLAGVSHDLRTILTRFKLELALLGDSPEIDAMRKDVDE 300 Query: 300 MSMMLEDYLAFARGDSGEVAQPTDMALALEELRSDAERHGHTATVAFHGLPVVTVKPASF 359 MS MLEDYLAFARGD+GE+AQPTD++ ALEELR DAER+GH+ATV+FHGLPVVTVKP + Sbjct: 301 MSHMLEDYLAFARGDNGEIAQPTDISNALEELRGDAERNGHSATVSFHGLPVVTVKPQAL 360 Query: 360 KRCLANLVSNAARHANTISITGHRDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARN 419 KRCL NLVSNAARHA+ I+ITGHRDHRYL +TVDDDGPGIPA+MREEVFKPFLRLDDARN Sbjct: 361 KRCLGNLVSNAARHADAIAITGHRDHRYLTITVDDDGPGIPAEMREEVFKPFLRLDDARN 420 Query: 420 QDEGGTGLGLAIARDIARSHGGDIMLSESPMGGLRAVVRVPV 461 QDEGGTGLGLAIARDIARSHGGDI L +SPMGGLRA VR+PV Sbjct: 421 QDEGGTGLGLAIARDIARSHGGDITLGDSPMGGLRASVRIPV 462 >ref|YP_571005.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisB5] gb|ABE41104.1| ATP-binding region, ATPase-like [Rhodopseudomonas palustris BisB5] Length = 462 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/462 (83%), Positives = 423/462 (91%), Gaps = 1/462 (0%) Query: 1 MSTLDSGLTLIKNASQRVSKANGWMGNAFKSWMPTGLYARALLIMIVPMVILQTVVAFVF 60 MSTLD+GLTLI++AS+RVS ANGW+G F +MP GLYARALLIMIVPMV+LQ+V+AFVF Sbjct: 1 MSTLDNGLTLIRSASRRVSAANGWLGQRFNDFMPKGLYARALLIMIVPMVVLQSVIAFVF 60 Query: 61 MERHWNTVTRRLSAAVVSDIAALIDVYKSYPQDKDRAQLRRIAQ-KLQLVVDFLPAGDMP 119 MERHWNTVT+RLSAAVV DIAALIDVYKSYPQDKD A LRRIAQ +L LVVDFL +MP Sbjct: 61 MERHWNTVTQRLSAAVVQDIAALIDVYKSYPQDKDSAALRRIAQNRLGLVVDFLGPNEMP 120 Query: 120 PPGPKPFFSLLDQTLSVQLGRQISRPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYA 179 PPGPKPFFSLLDQ++S Q+GRQI+RPFWID+VG+SNLVEIR+QLDD+VMR+FA RSAAYA Sbjct: 121 PPGPKPFFSLLDQSISKQIGRQIARPFWIDSVGRSNLVEIRIQLDDAVMRVFALRSAAYA 180 Query: 180 SNSEIFIFWMLGTSTILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR 239 SNSEIF+ WM+GTST+LLIVAVLFLRNQI+P+LRLADAAESFGKGR+APNF+PRGAREVR Sbjct: 181 SNSEIFLVWMVGTSTVLLIVAVLFLRNQIRPVLRLADAAESFGKGRDAPNFKPRGAREVR 240 Query: 240 RAAQAFIEMKARVERSIEQRTAMLAGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDE 299 RAA AFIEMK+RVER++EQRTAMLAGVSHDLRTILTRFKLEL LIG+ PE + MRKDVDE Sbjct: 241 RAAYAFIEMKSRVERAMEQRTAMLAGVSHDLRTILTRFKLELELIGDAPETEGMRKDVDE 300 Query: 300 MSMMLEDYLAFARGDSGEVAQPTDMALALEELRSDAERHGHTATVAFHGLPVVTVKPASF 359 MS MLE YLAFARGDSGE AQPTDM ALEELRSDAERHGH ATVAF G PVVTVKPASF Sbjct: 301 MSAMLEAYLAFARGDSGERAQPTDMPAALEELRSDAERHGHAATVAFSGQPVVTVKPASF 360 Query: 360 KRCLANLVSNAARHANTISITGHRDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARN 419 KRCLANLVSNAARHA+ I+ITG RDHRYL V +DDDGPGIP MREEVFKPFLRLDDARN Sbjct: 361 KRCLANLVSNAARHADAIAITGQRDHRYLTVMIDDDGPGIPTAMREEVFKPFLRLDDARN 420 Query: 420 QDEGGTGLGLAIARDIARSHGGDIMLSESPMGGLRAVVRVPV 461 QDEGG+GLGLAIARDIARSHGGDI L +SPMGGLRA VRVPV Sbjct: 421 QDEGGSGLGLAIARDIARSHGGDITLGDSPMGGLRATVRVPV 462 >ref|YP_780357.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] gb|ABJ05377.1| periplasmic sensor signal transduction histidine kinase [Rhodopseudomonas palustris BisA53] Length = 462 Score = 794 bits (2050), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/462 (83%), Positives = 424/462 (91%), Gaps = 1/462 (0%) Query: 1 MSTLDSGLTLIKNASQRVSKANGWMGNAFKSWMPTGLYARALLIMIVPMVILQTVVAFVF 60 MS++D+GLT+I+ A++RV + + ++ F +MP GLYARALLIMIVPMV+LQ+VVAFVF Sbjct: 1 MSSIDTGLTMIRTATRRVIRVHDYVWRRFNDFMPKGLYARALLIMIVPMVVLQSVVAFVF 60 Query: 61 MERHWNTVTRRLSAAVVSDIAALIDVYKSYPQDKDRAQLRRIAQ-KLQLVVDFLPAGDMP 119 MERHWNTVT+RLS AVV DIAALIDVYK YPQDKDRA LRRIAQ +L LVVDFL +GDMP Sbjct: 61 MERHWNTVTQRLSQAVVQDIAALIDVYKGYPQDKDRALLRRIAQERLGLVVDFLSSGDMP 120 Query: 120 PPGPKPFFSLLDQTLSVQLGRQISRPFWIDTVGKSNLVEIRVQLDDSVMRIFAQRSAAYA 179 PPGPKPFFSLLDQ++S Q+GRQI+RPFWIDTVG+SNLVEIR+QLDD+VMRIFAQRSAAYA Sbjct: 121 PPGPKPFFSLLDQSISKQIGRQIARPFWIDTVGRSNLVEIRIQLDDAVMRIFAQRSAAYA 180 Query: 180 SNSEIFIFWMLGTSTILLIVAVLFLRNQIKPILRLADAAESFGKGREAPNFRPRGAREVR 239 SNSEIF+FWM+GTSTILL+VAVLFLRNQI+PILRLADAAESFGKGRE NFRPRGAREVR Sbjct: 181 SNSEIFLFWMVGTSTILLVVAVLFLRNQIRPILRLADAAESFGKGREVANFRPRGAREVR 240 Query: 240 RAAQAFIEMKARVERSIEQRTAMLAGVSHDLRTILTRFKLELALIGEGPEIDAMRKDVDE 299 RAA AF+EMK+RVER++EQRTAMLAGVSHDLRTILTRFKLEL LIGE PE + MRKDVDE Sbjct: 241 RAAYAFVEMKSRVERTMEQRTAMLAGVSHDLRTILTRFKLELELIGEAPETEGMRKDVDE 300 Query: 300 MSMMLEDYLAFARGDSGEVAQPTDMALALEELRSDAERHGHTATVAFHGLPVVTVKPASF 359 M+ MLE YLAFARGDSGE AQPTDMA ALEELRSDAERHGH ATV FHGLPVVTVKPA+F Sbjct: 301 MAAMLEAYLAFARGDSGEQAQPTDMAEALEELRSDAERHGHAATVVFHGLPVVTVKPAAF 360 Query: 360 KRCLANLVSNAARHANTISITGHRDHRYLNVTVDDDGPGIPADMREEVFKPFLRLDDARN 419 KRCLANLVSNAAR+A+ I+ITGHRDHRYL VT+DDDGPGIP MREEVFKPFLRLDDARN Sbjct: 361 KRCLANLVSNAARYADKIAITGHRDHRYLTVTIDDDGPGIPQPMREEVFKPFLRLDDARN 420 Query: 420 QDEGGTGLGLAIARDIARSHGGDIMLSESPMGGLRAVVRVPV 461 QDEGGTGLGLAIARDIARSHGGDI L +SPMGGLRA VRVPV Sbjct: 421 QDEGGTGLGLAIARDIARSHGGDITLGDSPMGGLRATVRVPV 462