BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0041.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237835.1| diguanylate phosphodiesterase [Bradyrhizobiu... 262 3e-68 ref|NP_774117.1| hypothetical protein blr7477 [Bradyrhizobium ja... 261 5e-68 ref|YP_001207931.1| EAL domain-containing protein [Bradyrhizobiu... 259 2e-67 ref|ZP_08627198.1| diguanylate phosphodiesterase [Bradyrhizobiac... 242 3e-62 ref|YP_568426.1| putative cylclic diguanylate phosphodiesterase ... 241 6e-62 >ref|YP_001237835.1| diguanylate phosphodiesterase [Bradyrhizobium sp. BTAi1] gb|ABQ33929.1| diguanylate phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 531 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 153/271 (56%), Positives = 174/271 (64%), Gaps = 70/271 (25%) Query: 1 MIRISTIFIAICMVLLAASLGFVLYSVAGISGSESAIVALTALTCLILYNAVSMRLRDRS 60 MIRISTIFIAICMVL+AASLG +LYSVAG+SGSESAIVAL ALT LILYNAVSMRLRDRS Sbjct: 1 MIRISTIFIAICMVLVAASLGLILYSVAGMSGSESAIVALAALTFLILYNAVSMRLRDRS 60 Query: 61 DVGGQIADLSRGTADLARQVAEFGRRLAAVEGRVASANSTGADRMQGMAGEISELGGLVR 120 DVG QIADLSRGTADLARQVAEFGRRL+AVEGRV S+NS DR+QG+ EI+ELGGL++ Sbjct: 61 DVGSQIADLSRGTADLARQVAEFGRRLSAVEGRVVSSNSVSTDRLQGVISEINELGGLMK 120 Query: 121 QLAASVAHHEDMLAAAPA-VQPVASPRDDVLQRVAPAP----------------TVVVAP 163 QLA +VA HED++AA P+ QP AS AP P T VV P Sbjct: 121 QLAVTVAQHEDLIAAIPSQAQPAAS---------APTPSASAEPVRPAAAAPASTPVVEP 171 Query: 164 PPTPAAPPEVS--------------------------------------------RSQIQ 179 PA PEV RSQ Q Sbjct: 172 KIAPATAPEVKPAEPSMRVTPPAGLTPAKPVPSQPSPSPVATNAPPAAAAAPAAPRSQPQ 231 Query: 180 LIGAIKQAVDENRLDIYLQPMVTLPQRKVRY 210 ++ A+K A+D+NRLDIYLQP+VTLPQRKVR+ Sbjct: 232 MLAAVKAALDDNRLDIYLQPLVTLPQRKVRF 262 >ref|NP_774117.1| hypothetical protein blr7477 [Bradyrhizobium japonicum USDA 110] dbj|BAC52742.1| blr7477 [Bradyrhizobium japonicum USDA 110] Length = 496 Score = 261 bits (667), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 147/243 (60%), Positives = 172/243 (70%), Gaps = 41/243 (16%) Query: 1 MIRISTIFIAICMVLLAASLGFVLYSVAGISGSESAIVALTALTCLILYNAVSMRLRDRS 60 MIRISTIFIAICMVL+AASLG L +VAGISG+ESAIVALTALT LILYNAVSMRLRDRS Sbjct: 1 MIRISTIFIAICMVLVAASLGLALDAVAGISGTESAIVALTALTFLILYNAVSMRLRDRS 60 Query: 61 DVGGQIADLSRGTADLARQVAEFGRRLAAVEGRVASANSTGADRMQGMAGEISELGGLVR 120 DVGGQIADLSRGTADLARQVAEFGRRLAA+EGR+AS+NST +DR+Q + GEI+ELGGLVR Sbjct: 61 DVGGQIADLSRGTADLARQVAEFGRRLAAIEGRIASSNSTNSDRIQSVVGEINELGGLVR 120 Query: 121 QLAASVAHHEDMLAAA--PAVQPVASPRDDVLQRVAP-APTVVVAP-------------- 163 QLA++V+ HED+LA A P+ PVA R P AP ++AP Sbjct: 121 QLASTVSTHEDLLAGATPPSPAPVA--------RAEPEAPIDLIAPLGERPVAPPPLLAA 172 Query: 164 ----------------PPTPAAPPEVSRSQIQLIGAIKQAVDENRLDIYLQPMVTLPQRK 207 R+Q QL+ ++ A+DENR+DI+LQPMVTLPQRK Sbjct: 173 PPPPAAQPRPAPAAQAQAAHPVQTANGRNQTQLLATLRSAIDENRVDIFLQPMVTLPQRK 232 Query: 208 VRY 210 VR+ Sbjct: 233 VRF 235 >ref|YP_001207931.1| EAL domain-containing protein [Bradyrhizobium sp. ORS 278] emb|CAL79716.1| conserved hypothetical protein; putative signal peptide; EAL Domain [Bradyrhizobium sp. ORS 278] Length = 528 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 150/270 (55%), Positives = 175/270 (64%), Gaps = 69/270 (25%) Query: 1 MIRISTIFIAICMVLLAASLGFVLYSVAGISGSESAIVALTALTCLILYNAVSMRLRDRS 60 MIRISTIFIAICMVL+AASLG +LYSVAGISGSESAIV+L ALT LILYNAVSMRLRDRS Sbjct: 1 MIRISTIFIAICMVLVAASLGLILYSVAGISGSESAIVSLAALTFLILYNAVSMRLRDRS 60 Query: 61 DVGGQIADLSRGTADLARQVAEFGRRLAAVEGRVASANSTGADRMQGMAGEISELGGLVR 120 DVG QIADLSRGTADLARQVAEFGRRL+AVEGR+ S++S ADR+Q + GEI+ELGGL++ Sbjct: 61 DVGSQIADLSRGTADLARQVAEFGRRLSAVEGRIVSSSSVSADRLQSVVGEINELGGLMK 120 Query: 121 QLAASVAHHEDMLAAAPAVQPVASPRDDVLQRVAPAPTV--------------------- 159 QLA +VA HED++AA P Q VA+P A AP V Sbjct: 121 QLAVTVAQHEDLIAAIP--QQVATP-------AAEAPAVAREATSPAPAAPVASAVYPDP 171 Query: 160 -VVAPPPTPAAPPEVS--------------------------------------RSQIQL 180 + P P+ A P E + RSQ Q+ Sbjct: 172 KALPPAPSHAKPKEATATFGAAPSIAPVVRPPNPQPMAAAPAPPVATPAAPAVPRSQPQI 231 Query: 181 IGAIKQAVDENRLDIYLQPMVTLPQRKVRY 210 + A+K A+DENRLDIYLQP+VTLPQRKVR+ Sbjct: 232 LAAVKGAIDENRLDIYLQPLVTLPQRKVRF 261 >ref|ZP_08627198.1| diguanylate phosphodiesterase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP10108.1| diguanylate phosphodiesterase [Bradyrhizobiaceae bacterium SG-6C] Length = 480 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 134/221 (60%), Positives = 169/221 (76%), Gaps = 14/221 (6%) Query: 1 MIRISTIFIAICMVLLAASLGFVLYSVAGISGSESAIVALTALTCLILYNAVSMRLRDRS 60 MIRISTIFIAICMVL+AASLG +++S+AG++ SESAIVALTALT LILYNAVSMRLRDR+ Sbjct: 1 MIRISTIFIAICMVLIAASLGLLVHSLAGLTVSESAIVALTALTFLILYNAVSMRLRDRT 60 Query: 61 DVGGQIADLSRGTADLARQVAEFGRRLAAVEGRVASANSTGADRMQGMAGEISELGGLVR 120 DVGGQIADLSRGTADLARQVAEFGRR++A+E RV++ ++ G +R+Q MAGEISELG LV+ Sbjct: 61 DVGGQIADLSRGTADLARQVAEFGRRMSALEARVSANDANGQERVQTMAGEISELGSLVK 120 Query: 121 QLAASVAHHEDMLA---AAPAVQPVASPRDDVLQRVAPAP--------TVVVAPPPTPAA 169 LA+SVA H+D+LA +A P A Q +PAP + PP PAA Sbjct: 121 HLASSVAAHDDLLANAASAVQAPPAAPAAAMAAQEASPAPAANLTADAALAAEPPQQPAA 180 Query: 170 PPEVSRSQIQLIGAIKQAVDENRLDIYLQPMVTLPQRKVRY 210 + + QL+ A++ A++ NR+D++LQPMVTLPQRKVR+ Sbjct: 181 ---AALTNTQLLVAVRNAIEANRIDLFLQPMVTLPQRKVRF 218 >ref|YP_568426.1| putative cylclic diguanylate phosphodiesterase [Rhodopseudomonas palustris BisB5] gb|ABE38525.1| diguanylate phosphodiesterase [Rhodopseudomonas palustris BisB5] Length = 490 Score = 241 bits (614), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 136/223 (60%), Positives = 163/223 (73%), Gaps = 13/223 (5%) Query: 1 MIRISTIFIAICMVLLAASLGFVLYSVAGISGSESAIVALTALTCLILYNAVSMRLRDRS 60 M RISTIFIAICMVL++ SLG V+YS+AG S ESAIVAL LT +LY+AVSMRL DR+ Sbjct: 1 MFRISTIFIAICMVLVSVSLGTVVYSLAGFSAGESAIVALATLTFFVLYSAVSMRLSDRA 60 Query: 61 DVGGQIADLSRGTADLARQVAEFGRRLAAVEGRVASANSTGADRMQGMAGEISELGGLVR 120 D QIADLSRGTADLARQ+AEFGRRLA VEG+V +AN+T DR+Q GEI ELG LV+ Sbjct: 61 DPSHQIADLSRGTADLARQIAEFGRRLAVVEGKVVAANATNQDRIQVAMGEIGELGLLVK 120 Query: 121 QLAASVAHHEDMLA-AAPAVQPVASPRDD-----VLQRVA------PAPTVVVAPPPTPA 168 QLAASVA HEDMLA AAP P +P D +Q++A P T VV P P+ Sbjct: 121 QLAASVATHEDMLAGAAPGAPPRRTPLLDPEAPVQIQQIADNQAEQPGATDVVPAPAAPS 180 Query: 169 A-PPEVSRSQIQLIGAIKQAVDENRLDIYLQPMVTLPQRKVRY 210 + PP+ +R Q++ A+K AV+ RLDIYLQP+VTLPQRKVR+ Sbjct: 181 SLPPQPARDPAQILTAVKNAVEAGRLDIYLQPLVTLPQRKVRF 223