BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0040.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_774117.1| hypothetical protein blr7477 [Bradyrhizobium ja... 370 e-100 ref|YP_001237835.1| diguanylate phosphodiesterase [Bradyrhizobiu... 361 4e-98 ref|YP_001207931.1| EAL domain-containing protein [Bradyrhizobiu... 361 6e-98 ref|YP_779852.1| diguanylate phosphodiesterase [Rhodopseudomonas... 329 2e-88 ref|YP_484804.1| diguanylate phosphodiesterase [Rhodopseudomonas... 328 4e-88 >ref|NP_774117.1| hypothetical protein blr7477 [Bradyrhizobium japonicum USDA 110] dbj|BAC52742.1| blr7477 [Bradyrhizobium japonicum USDA 110] Length = 496 Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/231 (78%), Positives = 205/231 (88%), Gaps = 5/231 (2%) Query: 2 IGRIDHMVMLRCVQVLRRLMIRSKDVGVFCNVSAATLASPAHFTQCLDFLEANRALAPSF 61 IGR+D+MVMLRCVQVLRRLM+R+KDVGVFCNV+A+TL + F QCLDFLEANRALAPS Sbjct: 265 IGRVDNMVMLRCVQVLRRLMVRNKDVGVFCNVAASTLGNSTTFAQCLDFLEANRALAPSL 324 Query: 62 VLEFKQATFRNLGPAESENLAALAQRGYRFSIDHVSDLRLEPRELADRGVRFIKVPAALL 121 VLEFKQ+TFRNLGPAESENLAALAQRG+RFSIDHV+DLR+EPRELADRGVRFIKVPA LL Sbjct: 325 VLEFKQSTFRNLGPAESENLAALAQRGFRFSIDHVTDLRIEPRELADRGVRFIKVPATLL 384 Query: 122 LDAKQIATTDIHPSDLSDLLGRYGIDLIAERIEGERSVVDLLDYDVRFGQGFLFAPPRPL 181 LD +Q +T+DIHPSDLSDLLGR+GIDLIAERIEGER+VVDLLDYDVRFGQGFLFAPPRPL Sbjct: 385 LDPRQASTSDIHPSDLSDLLGRFGIDLIAERIEGERAVVDLLDYDVRFGQGFLFAPPRPL 444 Query: 182 RPEGASATAEAPQPNPQDLNGASTS---APVSSPAAPP--RATGSAALARR 227 RPEGASAT A QD+ G++ S +P ++ AAPP R TG+AALARR Sbjct: 445 RPEGASATGGASPNQAQDIQGSNVSGTPSPGATSAAPPAQRITGNAALARR 495 >ref|YP_001237835.1| diguanylate phosphodiesterase [Bradyrhizobium sp. BTAi1] gb|ABQ33929.1| diguanylate phosphodiesterase [Bradyrhizobium sp. BTAi1] Length = 531 Score = 361 bits (927), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 181/239 (75%), Positives = 208/239 (87%), Gaps = 9/239 (3%) Query: 2 IGRIDHMVMLRCVQVLRRLMIRSKDVGVFCNVSAATLASPAHFTQCLDFLEANRALAPSF 61 +GRIDHMVMLRCVQVLRRLM+R+K+VG+FCNVS+ATL+SPA+F+QCLDFLEANRALAPSF Sbjct: 292 VGRIDHMVMLRCVQVLRRLMVRNKEVGIFCNVSSATLSSPANFSQCLDFLEANRALAPSF 351 Query: 62 VLEFKQATFRNLGPAESENLAALAQRGYRFSIDHVSDLRLEPRELADRGVRFIKVPAALL 121 VLEFKQAT RNLGP E+E+LAALAQRGYRFS+DHV++LR EPRELADRG+RFIKVPAALL Sbjct: 352 VLEFKQATLRNLGPTETEHLAALAQRGYRFSMDHVTELRFEPRELADRGIRFIKVPAALL 411 Query: 122 LDAKQIATTDIHPSDLSDLLGRYGIDLIAERIEGERSVVDLLDYDVRFGQGFLFAPPRPL 181 LD KQ + +DIHP+DLSDLLGR+GIDLIAERIEGERSV+DLLDYDVRFGQGFLFAPPRPL Sbjct: 412 LDPKQGSVSDIHPTDLSDLLGRFGIDLIAERIEGERSVIDLLDYDVRFGQGFLFAPPRPL 471 Query: 182 RPEGASATAEAPQPNP--------QDLNGAS-TSAPVSSPAAPPRATGSAALARRALGP 231 RPEG+SAT A +P QD N A S+ S+ +A PR+ G+AALARR GP Sbjct: 472 RPEGSSATGVAAAASPGGGQDIKIQDPNAAGPHSSDASTTSASPRSVGNAALARRIAGP 530 >ref|YP_001207931.1| EAL domain-containing protein [Bradyrhizobium sp. ORS 278] emb|CAL79716.1| conserved hypothetical protein; putative signal peptide; EAL Domain [Bradyrhizobium sp. ORS 278] Length = 528 Score = 361 bits (926), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 180/236 (76%), Positives = 201/236 (85%), Gaps = 7/236 (2%) Query: 2 IGRIDHMVMLRCVQVLRRLMIRSKDVGVFCNVSAATLASPAHFTQCLDFLEANRALAPSF 61 +GRIDHMV+LRCVQVLRRLM+R+KDVG+FCN+S+ATL+SPA F QCLDFLEANRALAPSF Sbjct: 291 VGRIDHMVLLRCVQVLRRLMVRNKDVGIFCNLSSATLSSPASFAQCLDFLEANRALAPSF 350 Query: 62 VLEFKQATFRNLGPAESENLAALAQRGYRFSIDHVSDLRLEPRELADRGVRFIKVPAALL 121 VLEFKQ+T R+LGP E+E+LAALAQRGYRFSIDHV+DLR EPRELADRGVRFIKVPAALL Sbjct: 351 VLEFKQSTLRSLGPTETEHLAALAQRGYRFSIDHVTDLRFEPRELADRGVRFIKVPAALL 410 Query: 122 LDAKQIATTDIHPSDLSDLLGRYGIDLIAERIEGERSVVDLLDYDVRFGQGFLFAPPRPL 181 LD KQ + +DIHP+DLSDLLGR+GIDLIAERIEGE SVVDLLDYDVRFGQGFLFAPPRPL Sbjct: 411 LDPKQSSVSDIHPTDLSDLLGRFGIDLIAERIEGENSVVDLLDYDVRFGQGFLFAPPRPL 470 Query: 182 RPEGASATAEAPQPNP-------QDLNGASTSAPVSSPAAPPRATGSAALARRALG 230 RPEGASAT EA P QD N A T + +S A +G+AALARR G Sbjct: 471 RPEGASATGEAAVTPPGGQDIKIQDPNAAGTPSLDASNANAATRSGNAALARRIAG 526 >ref|YP_779852.1| diguanylate phosphodiesterase [Rhodopseudomonas palustris BisA53] gb|ABJ04872.1| diguanylate phosphodiesterase [Rhodopseudomonas palustris BisA53] Length = 493 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/232 (68%), Positives = 191/232 (82%), Gaps = 2/232 (0%) Query: 2 IGRIDHMVMLRCVQVLRRLMIRSKDVGVFCNVSAATLASPAHFTQCLDFLEANRALAPSF 61 IGRIDH ++LRC+QVLRRL++R+KDVG+FCN++AATL +P F QCLDFLEANRA+A SF Sbjct: 261 IGRIDHALILRCMQVLRRLLVRNKDVGIFCNIAAATLRNPETFAQCLDFLEANRAMASSF 320 Query: 62 VLEFKQATFRNLGPAESENLAALAQRGYRFSIDHVSDLRLEPRELADRGVRFIKVPAALL 121 V+EFKQ FR+ GP E E++AALAQRGYRFSIDHV+DLR+EPRELADRGVRF+KVPA+LL Sbjct: 321 VIEFKQGAFRSFGPVEIEHVAALAQRGYRFSIDHVTDLRIEPRELADRGVRFLKVPASLL 380 Query: 122 LDAKQIATTDIHPSDLSDLLGRYGIDLIAERIEGERSVVDLLDYDVRFGQGFLFAPPRPL 181 L + A + IHP DLSDLLGRYGIDLIAERIEGER+VVDLLD+DVRFGQGFLF+ PRPL Sbjct: 381 LGQSEGAPSHIHPQDLSDLLGRYGIDLIAERIEGERAVVDLLDFDVRFGQGFLFSAPRPL 440 Query: 182 RPEGASATAEAPQPNPQDLNGASTSAPVSSP--AAPPRATGSAALARRALGP 231 RP+ A+A ++ P N ++ + A PPRATG+AALARRA GP Sbjct: 441 RPDAAAANGQSAPGTPSQANNDASKVLQADAVRADPPRATGNAALARRAAGP 492 >ref|YP_484804.1| diguanylate phosphodiesterase [Rhodopseudomonas palustris HaA2] gb|ABD05893.1| diguanylate phosphodiesterase [Rhodopseudomonas palustris HaA2] Length = 490 Score = 328 bits (841), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 170/237 (71%), Positives = 192/237 (81%), Gaps = 7/237 (2%) Query: 2 IGRIDHMVMLRCVQVLRRLMIRSKDVGVFCNVSAATLASPAHFTQCLDFLEANRALAPSF 61 +GRIDH VMLR VQVLRRLM+R+KDVGVF N++AATL+ F QCLDFLEAN+ALAPSF Sbjct: 253 MGRIDHAVMLRAVQVLRRLMVRNKDVGVFVNIAAATLSDAESFAQCLDFLEANKALAPSF 312 Query: 62 VLEFKQATFRNLGPAESENLAALAQRGYRFSIDHVSDLRLEPRELADRGVRFIKVPAALL 121 VLEFKQ+T RNLGP E+E+LAALAQRG+RFSIDHV+DLR EPR+LADRGVRFIKVPAALL Sbjct: 313 VLEFKQSTLRNLGPLETEHLAALAQRGFRFSIDHVTDLRFEPRDLADRGVRFIKVPAALL 372 Query: 122 LDAKQIATTDIHPSDLSDLLGRYGIDLIAERIEGERSVVDLLDYDVRFGQGFLFAPPRPL 181 LD ++ DIHP+DLSDLLGR+GIDLIAERIEGER+VVDLLDYDVRFGQGFLFA PRPL Sbjct: 373 LDQREHPVADIHPADLSDLLGRFGIDLIAERIEGERAVVDLLDYDVRFGQGFLFAAPRPL 432 Query: 182 RPEGASATAEAPQPNPQDLNGASTSAPVSSPAA------PPR-ATGSAALARRALGP 231 RPE A + A + + A P SSP PPR ATG AALARRA+GP Sbjct: 433 RPETAPSPAPPTPGDKAKQDIAPPYDPGSSPKGEPARIDPPRAATGLAALARRAVGP 489