BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0038.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_774119.1| two-component response regulator [Bradyrhizobiu...   253   8e-66
ref|YP_001207933.1| putative response regulator receiver [Bradyr...   245   2e-63
ref|ZP_08627200.1| chemotaxis regulator [Bradyrhizobiaceae bacte...   244   3e-63
ref|YP_004631845.1| chemotaxis protein CheY [Oligotropha carboxi...   240   5e-62
ref|YP_002290200.1| two-component response regulator [Oligotroph...   240   6e-62

>ref|NP_774119.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC52744.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 131

 Score =  253 bits (645), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 123/125 (98%), Positives = 125/125 (100%)

Query: 1   MPVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG 60
           MPVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG
Sbjct: 7   MPVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG 66

Query: 61  YDLLKEVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP 120
           YDLL+EVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP
Sbjct: 67  YDLLREVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP 126

Query: 121 DMATA 125
           DMA+A
Sbjct: 127 DMASA 131


>ref|YP_001207933.1| putative response regulator receiver [Bradyrhizobium sp. ORS 278]
 emb|CAL79718.1| putative Response regulator receiver (CheY-like protein)
           [Bradyrhizobium sp. ORS 278]
          Length = 131

 Score =  245 bits (625), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/125 (95%), Positives = 123/125 (98%)

Query: 1   MPVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG 60
           MPVLVVDDYSTMIRIIRNLLKQ+GFE+IDDASDGS ALNKMR KKYGLVISDWNMEPMTG
Sbjct: 7   MPVLVVDDYSTMIRIIRNLLKQIGFEDIDDASDGSMALNKMRAKKYGLVISDWNMEPMTG 66

Query: 61  YDLLKEVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP 120
           YDLL+EVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKI+AVFP
Sbjct: 67  YDLLREVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIDAVFP 126

Query: 121 DMATA 125
           DMATA
Sbjct: 127 DMATA 131


>ref|ZP_08627200.1| chemotaxis regulator [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP10110.1| chemotaxis regulator [Bradyrhizobiaceae bacterium SG-6C]
          Length = 131

 Score =  244 bits (623), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/121 (98%), Positives = 121/121 (100%)

Query: 1   MPVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG 60
           MPVLVVDDY+TMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG
Sbjct: 7   MPVLVVDDYNTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG 66

Query: 61  YDLLKEVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP 120
           YDLLKEVR+DPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP
Sbjct: 67  YDLLKEVRSDPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP 126

Query: 121 D 121
           D
Sbjct: 127 D 127


>ref|YP_004631845.1| chemotaxis protein CheY [Oligotropha carboxidovorans OM5]
 gb|AEI02028.1| chemotaxis protein CheY [Oligotropha carboxidovorans OM4]
 gb|AEI05604.1| chemotaxis protein CheY [Oligotropha carboxidovorans OM5]
          Length = 130

 Score =  240 bits (612), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 117/123 (95%), Positives = 121/123 (98%)

Query: 1   MPVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG 60
           MPVLVVDDY+TMIRIIRNLLKQLGFENIDDASDGSAAL KMRGKKYGLVISDWNMEPMTG
Sbjct: 7   MPVLVVDDYNTMIRIIRNLLKQLGFENIDDASDGSAALAKMRGKKYGLVISDWNMEPMTG 66

Query: 61  YDLLKEVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP 120
           Y+LLKEVR+DPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKI+AVFP
Sbjct: 67  YELLKEVRSDPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIDAVFP 126

Query: 121 DMA 123
           D A
Sbjct: 127 DHA 129


>ref|YP_002290200.1| two-component response regulator [Oligotropha carboxidovorans OM5]
 gb|ACI94335.1| two-component response regulator [Oligotropha carboxidovorans OM5]
          Length = 128

 Score =  240 bits (612), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 117/123 (95%), Positives = 121/123 (98%)

Query: 1   MPVLVVDDYSTMIRIIRNLLKQLGFENIDDASDGSAALNKMRGKKYGLVISDWNMEPMTG 60
           MPVLVVDDY+TMIRIIRNLLKQLGFENIDDASDGSAAL KMRGKKYGLVISDWNMEPMTG
Sbjct: 5   MPVLVVDDYNTMIRIIRNLLKQLGFENIDDASDGSAALAKMRGKKYGLVISDWNMEPMTG 64

Query: 61  YDLLKEVRADPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIEAVFP 120
           Y+LLKEVR+DPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKI+AVFP
Sbjct: 65  YELLKEVRSDPNLATTPFIMITAESKTENVIAAKKAGVNNYIVKPFNAATLKTKIDAVFP 124

Query: 121 DMA 123
           D A
Sbjct: 125 DHA 127