BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0031.p         (80 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001237829.1| hypothetical protein BBta_1714 [Bradyrhizobi...   109   1e-22
ref|YP_001207937.1| putative signal peptide [Bradyrhizobium sp. ...    97   1e-18
ref|YP_531274.1| hypothetical protein RPC_1393 [Rhodopseudomonas...    91   8e-17
ref|YP_487783.1| hypothetical protein RPB_4180 [Rhodopseudomonas...    90   1e-16
ref|YP_004110875.1| hypothetical protein Rpdx1_4592 [Rhodopseudo...    88   5e-16

>ref|YP_001237829.1| hypothetical protein BBta_1714 [Bradyrhizobium sp. BTAi1]
 gb|ABQ33923.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 222

 Score =  109 bits (273), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 61/77 (79%), Gaps = 1/77 (1%)

Query: 1   VSTNPSLMPSQLGYTGGLLGMFKGNSSESKPFKGEPTRESLTEPPPGYQTPSGGYAYGTG 60
           V+ NP L PSQLG+ GGL GMFKGN SE+KPF  EP RESLT+PPPGYQTPS  YAYGTG
Sbjct: 145 VTNNPMLSPSQLGFKGGLFGMFKGNDSEAKPFTSEPQRESLTQPPPGYQTPSPSYAYGTG 204

Query: 61  PQAPMAKEGQYDVMTGK 77
           PQ P+  + Q D+MTGK
Sbjct: 205 PQEPLGAK-QMDIMTGK 220


>ref|YP_001207937.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL79722.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 221

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/77 (64%), Positives = 58/77 (75%), Gaps = 1/77 (1%)

Query: 1   VSTNPSLMPSQLGYTGGLLGMFKGNSSESKPFKGEPTRESLTEPPPGYQTPSGGYAYGTG 60
           VS +P L PSQLGY GGL GMFKG+ +ESK F  EP RESLT+PPPGYQTPS  YAYGTG
Sbjct: 144 VSNSPILSPSQLGYKGGLFGMFKGSDNESKTFTSEPQRESLTQPPPGYQTPSPSYAYGTG 203

Query: 61  PQAPMAKEGQYDVMTGK 77
              P+  + Q D++TGK
Sbjct: 204 KMEPVGGK-QMDILTGK 219


>ref|YP_531274.1| hypothetical protein RPC_1393 [Rhodopseudomonas palustris BisB18]
 gb|ABD86955.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 265

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 46/80 (57%), Positives = 59/80 (73%), Gaps = 2/80 (2%)

Query: 2   STNPSLMPSQLGYTGGLLG-MFKGNSSESKPFKGEPTRESLTEPPPGYQTPSGGYAYGTG 60
           + NP L PSQLGYTGG+   MF G+S E+ PF GEP+RE+LT+PP GYQTPS  YAYGTG
Sbjct: 186 ANNPILSPSQLGYTGGIFSTMFGGSSVETAPFTGEPSRETLTQPPVGYQTPSPNYAYGTG 245

Query: 61  PQAPMAKEGQYDVMTGKPVQ 80
           P+  +  +   D+MTGK ++
Sbjct: 246 PKESLNNQ-HTDIMTGKEIK 264


>ref|YP_487783.1| hypothetical protein RPB_4180 [Rhodopseudomonas palustris HaA2]
 gb|ABD08872.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 241

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 4   NPSLMPSQLGYTGGLLGMFKGNSSESKPFKGEPTRESLTEPPPGYQTPSGGYAYGTGPQA 63
           NP L PSQLG+TG    +F GN +E+ PF GEPTRE+LT+PP GYQTPS  +AYGTGP+ 
Sbjct: 165 NPILSPSQLGFTGSFSSLFGGNKTETAPFTGEPTRETLTQPPAGYQTPSPNFAYGTGPKE 224

Query: 64  PMAKEGQYDVMTGKPV 79
            +  + + D+M+GK V
Sbjct: 225 ALGNK-RIDIMSGKEV 239


>ref|YP_004110875.1| hypothetical protein Rpdx1_4592 [Rhodopseudomonas palustris DX-1]
 gb|ADU46142.1| hypothetical protein Rpdx1_4592 [Rhodopseudomonas palustris DX-1]
          Length = 238

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 1/74 (1%)

Query: 4   NPSLMPSQLGYTGGLLGMFKGNSSESKPFKGEPTRESLTEPPPGYQTPSGGYAYGTGPQA 63
           NP L PSQLG+ G L  +F G+ +E+  F GEPTRE+LT+PP GYQTPS  YAYGTGP+ 
Sbjct: 162 NPMLSPSQLGFNGSLWSVFGGSKTETATFSGEPTRETLTQPPVGYQTPSSNYAYGTGPKE 221

Query: 64  PMAKEGQYDVMTGK 77
            +  + + D+MTGK
Sbjct: 222 ALGNK-RIDIMTGK 234