BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0027.p         (76 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_531271.1| peptidyl-tRNA hydrolase domain-containing prote...   126   1e-27
ref|YP_001237824.1| peptidyl-tRNA hydrolase domain-containing pr...   126   1e-27
ref|YP_001207940.1| peptidyl-tRNA hydrolase domain-containing pr...   124   4e-27
ref|YP_002290209.1| class I peptide chain release factor [Oligot...   124   4e-27
ref|YP_571153.1| peptidyl-tRNA hydrolase domain-containing prote...   124   6e-27

>ref|YP_531271.1| peptidyl-tRNA hydrolase domain-containing protein [Rhodopseudomonas
           palustris BisB18]
 gb|ABD86952.1| Class I peptide chain release factor [Rhodopseudomonas palustris
           BisB18]
          Length = 140

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 70/76 (92%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           MTKDGVIVIHA RFRTQERNRADAI+RLLE+LREAMVRP PRR TKPTLGSK+RRLEGKK
Sbjct: 65  MTKDGVIVIHAQRFRTQERNRADAIDRLLELLREAMVRPVPRRATKPTLGSKKRRLEGKK 124

Query: 61  RRSDIKAGRGTRRFDD 76
           RRSD+K+ RG+  F+D
Sbjct: 125 RRSDVKSKRGSGGFED 140


>ref|YP_001237824.1| peptidyl-tRNA hydrolase domain-containing protein [Bradyrhizobium
           sp. BTAi1]
 gb|ABQ33918.1| putative Class I peptide chain release factor domain protein
           [Bradyrhizobium sp. BTAi1]
          Length = 139

 Score =  126 bits (316), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 68/76 (89%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           MTK+GVIVI A RFRTQERN+ADAIERL+ +LREAMVRP  RRPTKPT GSKQRRLEGKK
Sbjct: 64  MTKNGVIVIQAERFRTQERNKADAIERLVTLLREAMVRPKVRRPTKPTFGSKQRRLEGKK 123

Query: 61  RRSDIKAGRGTRRFDD 76
            RSD+KAGRG RRFDD
Sbjct: 124 LRSDVKAGRGARRFDD 139


>ref|YP_001207940.1| peptidyl-tRNA hydrolase domain-containing protein [Bradyrhizobium
           sp. ORS 278]
 emb|CAL79725.1| putative Class I peptide chain release factor domain protein
           [Bradyrhizobium sp. ORS 278]
          Length = 139

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 63/76 (82%), Positives = 67/76 (88%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           MTK GVIVI A RFRTQERN+ADAIERL+ +LREAMVRP  RRPTKPT GSKQRRLEGKK
Sbjct: 64  MTKTGVIVIQAERFRTQERNKADAIERLVTLLREAMVRPKVRRPTKPTFGSKQRRLEGKK 123

Query: 61  RRSDIKAGRGTRRFDD 76
            RSD+KAGRG RRFDD
Sbjct: 124 IRSDVKAGRGARRFDD 139


>ref|YP_002290209.1| class I peptide chain release factor [Oligotropha carboxidovorans
           OM5]
 ref|YP_004631837.1| peptide chain release factor protein [Oligotropha carboxidovorans
           OM5]
 gb|ACI94344.1| class I peptide chain release factor [Oligotropha carboxidovorans
           OM5]
 gb|AEI02020.1| putative peptide chain release factor protein [Oligotropha
           carboxidovorans OM4]
 gb|AEI05596.1| putative peptide chain release factor protein [Oligotropha
           carboxidovorans OM5]
          Length = 138

 Score =  124 bits (312), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 70/76 (92%), Gaps = 1/76 (1%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           MTKDGV+V+HA RFRTQERNRADAIERLL +LREA VRP PRRPTKPTLGSK+RRLEGKK
Sbjct: 64  MTKDGVLVLHAQRFRTQERNRADAIERLLVLLREAAVRPKPRRPTKPTLGSKKRRLEGKK 123

Query: 61  RRSDIKAGRGTRRFDD 76
           RRSD+KAGR + RFDD
Sbjct: 124 RRSDVKAGR-SGRFDD 138


>ref|YP_571153.1| peptidyl-tRNA hydrolase domain-containing protein [Rhodopseudomonas
           palustris BisB5]
 gb|ABE41252.1| Class I peptide chain release factor [Rhodopseudomonas palustris
           BisB5]
          Length = 139

 Score =  124 bits (310), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 61/76 (80%), Positives = 68/76 (89%)

Query: 1   MTKDGVIVIHAFRFRTQERNRADAIERLLEMLREAMVRPTPRRPTKPTLGSKQRRLEGKK 60
           MTK+GVIVIHA RFRTQERNRADAI+RLLE+LR AMVRP PRR T+PTLGSK+RRLEGKK
Sbjct: 64  MTKEGVIVIHAQRFRTQERNRADAIDRLLELLRAAMVRPIPRRATRPTLGSKKRRLEGKK 123

Query: 61  RRSDIKAGRGTRRFDD 76
           RR D+KAGR  + FDD
Sbjct: 124 RRGDVKAGRSGKSFDD 139