BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0021.p (235 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771946.1| hypothetical protein blr5306 [Bradyrhizobium ja... 369 e-100 ref|NP_948515.1| hypothetical protein RPA3176 [Rhodopseudomonas ... 352 4e-95 ref|ZP_08630307.1| hypothetical protein CSIRO_3412 [Bradyrhizobi... 350 1e-94 ref|YP_001992561.1| type I phosphodiesterase/nucleotide pyrophos... 349 2e-94 ref|YP_001205267.1| putative signal peptide [Bradyrhizobium sp. ... 345 4e-93 >ref|NP_771946.1| hypothetical protein blr5306 [Bradyrhizobium japonicum USDA 110] dbj|BAC50571.1| blr5306 [Bradyrhizobium japonicum USDA 110] Length = 638 Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/236 (78%), Positives = 204/236 (86%), Gaps = 2/236 (0%) Query: 1 VLGRDPAKPDVVIATNGGSDLIYLPNRDKKLADRVIKALLEQDYVSGLFVDYKLGTFPGT 60 VLG+DP KPD+V+ATNGGSDL+YLP++DKKLA + IKALLEQDYVSGLFV+ LG FPGT Sbjct: 404 VLGKDPEKPDLVVATNGGSDLVYLPSKDKKLAAKTIKALLEQDYVSGLFVEDSLGRFPGT 463 Query: 61 LPMSNLNLKGKAVTPNPSIVVNFRSWSSGC-EIPTNCSVQVADTVLRQGQGMHGSFSRGD 119 LP+S+LNL+GK+ TP PSIVVNFRS++S C E PTNCSVQVADTVLRQGQGMHGSFSRGD Sbjct: 464 LPLSSLNLRGKSATPTPSIVVNFRSYASDCGEAPTNCSVQVADTVLRQGQGMHGSFSRGD 523 Query: 120 TFNFTAAIGPDFKAGYVDPLPVSNADVGMTAAQLLGLRAPNNGGLIGRVMSEALPNGIVP 179 T NF AAIGPDFKAGYV +PVSNADVGMTAAQL+GLR +NGGLIGRVMSEALPNGIVP Sbjct: 524 TMNFMAAIGPDFKAGYVSLIPVSNADVGMTAAQLMGLRGAHNGGLIGRVMSEALPNGIVP 583 Query: 180 KMAEGTIMSKKPSANGLRTVLKFQRVLSTRYFDVAGFPGRTLGLEETGGKQKTAGK 235 K +G SK SANGL+TVL QRV S RYFD AGFPGRTLGLE GKQKTAGK Sbjct: 584 KAFKGVEKSKM-SANGLQTVLNLQRVGSQRYFDAAGFPGRTLGLEPDAGKQKTAGK 638 >ref|NP_948515.1| hypothetical protein RPA3176 [Rhodopseudomonas palustris CGA009] emb|CAE28617.1| hypothetical protein RPA3176 [Rhodopseudomonas palustris CGA009] Length = 616 Score = 352 bits (902), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 177/235 (75%), Positives = 194/235 (82%), Gaps = 1/235 (0%) Query: 1 VLGRDPAKPDVVIATNGGSDLIYLPNRDKKLADRVIKALLEQDYVSGLFVDYKLGTFPGT 60 VLG+DPAKPD+V+ATNGGSDLIYLP DKKLA R I+ALLEQDYVSGLFVD LG+FPG Sbjct: 383 VLGKDPAKPDLVVATNGGSDLIYLPTGDKKLAGRTIRALLEQDYVSGLFVDDSLGSFPGA 442 Query: 61 LPMSNLNLKGKAVTPNPSIVVNFRSWSSGCEIPTNCSVQVADTVLRQGQGMHGSFSRGDT 120 LP+S LNLKGKA TP P+IVVNFRS++SGC PT CSVQVADTVLRQGQGMHGSFSRGDT Sbjct: 443 LPLSALNLKGKAATPTPAIVVNFRSYASGCAEPTVCSVQVADTVLRQGQGMHGSFSRGDT 502 Query: 121 FNFTAAIGPDFKAGYVDPLPVSNADVGMTAAQLLGLRAPNNGGLIGRVMSEALPNGIVPK 180 NF AA GPDFKAG+ DPLPVSNADVG TAA+L+GL G LIGRVM+EA+PNG VPK Sbjct: 503 MNFMAASGPDFKAGFADPLPVSNADVGFTAAKLMGLDPTTKGKLIGRVMTEAMPNGAVPK 562 Query: 181 MAEGTIMSKKPSANGLRTVLKFQRVLSTRYFDVAGFPGRTLGLEETGGKQKTAGK 235 + TI SK +ANGLRTVL QRV RYFD AGFPGRTLGL+ KQKTAGK Sbjct: 563 ATQETIRSKY-AANGLRTVLAMQRVGEQRYFDAAGFPGRTLGLDGETTKQKTAGK 616 >ref|ZP_08630307.1| hypothetical protein CSIRO_3412 [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06686.1| hypothetical protein CSIRO_3412 [Bradyrhizobiaceae bacterium SG-6C] Length = 624 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 169/234 (72%), Positives = 200/234 (85%), Gaps = 4/234 (1%) Query: 1 VLGRDPAKPDVVIATNGGSDLIYLPNRDKKLADRVIKALLEQDYVSGLFVDYKLGTFPGT 60 +LG+DP KPD+V+ATNGGSDLIY+PN+D+KLA R +KALLE DYVSG+F+D LG FPGT Sbjct: 393 LLGKDPLKPDLVVATNGGSDLIYVPNKDRKLAGRTVKALLEHDYVSGIFIDDSLGRFPGT 452 Query: 61 LPMSNLNLKGKAVTPNPSIVVNFRSWSSGCEIPTNCSVQVADTVLRQGQGMHGSFSRGDT 120 LP+S LNLKGKAVTP+P+IVVNFRS++ GC+ PT CS+ +ADT+LRQGQGMHGSFSRGDT Sbjct: 453 LPLSLLNLKGKAVTPHPAIVVNFRSYAKGCDEPTLCSISIADTILRQGQGMHGSFSRGDT 512 Query: 121 FNFTAAIGPDFKAGYVDPLPVSNADVGMTAAQLLGLRAPNNGGLIGRVMSEALPNGIVPK 180 NF AAIGPDFKAG+++ LPVSNADVG+TAA LLGL+ G LIGRVM+EA+PNG+ PK Sbjct: 513 MNFMAAIGPDFKAGFINELPVSNADVGITAAHLLGLKRKAKGSLIGRVMTEAMPNGVTPK 572 Query: 181 MAEGTIMSKKPSANGLRTVLKFQRVLSTRYFDVAGFPGRTLGLEETGGKQKTAG 234 GTI + KP+ANGLRTVL+FQRVL RYFDVAGFPGRT+GL E K KTAG Sbjct: 573 GYTGTI-AGKPAANGLRTVLQFQRVLDQRYFDVAGFPGRTVGLPE---KTKTAG 622 >ref|YP_001992561.1| type I phosphodiesterase/nucleotide pyrophosphatase [Rhodopseudomonas palustris TIE-1] gb|ACF02086.1| type I phosphodiesterase/nucleotide pyrophosphatase [Rhodopseudomonas palustris TIE-1] Length = 616 Score = 349 bits (896), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 175/235 (74%), Positives = 193/235 (82%), Gaps = 1/235 (0%) Query: 1 VLGRDPAKPDVVIATNGGSDLIYLPNRDKKLADRVIKALLEQDYVSGLFVDYKLGTFPGT 60 VLG+DPAKPD+V+ATNGGSDLIYLP DKKLA R I+ALLEQDYVSGLFVD LG+FPG Sbjct: 383 VLGKDPAKPDLVVATNGGSDLIYLPTGDKKLAGRTIRALLEQDYVSGLFVDDSLGSFPGA 442 Query: 61 LPMSNLNLKGKAVTPNPSIVVNFRSWSSGCEIPTNCSVQVADTVLRQGQGMHGSFSRGDT 120 LP+S LNLKGKA TP P+IVVNFRS++SGC PT CSVQVADTVLRQGQGMHGSFSRGDT Sbjct: 443 LPLSALNLKGKAATPTPAIVVNFRSYASGCAEPTVCSVQVADTVLRQGQGMHGSFSRGDT 502 Query: 121 FNFTAAIGPDFKAGYVDPLPVSNADVGMTAAQLLGLRAPNNGGLIGRVMSEALPNGIVPK 180 NF AA GPDFKAG+ DPLPVSNADVG TAA+L+GL G LIGRVM+EA+PNG VPK Sbjct: 503 MNFMAASGPDFKAGFADPLPVSNADVGFTAAKLMGLDPTTKGKLIGRVMTEAMPNGAVPK 562 Query: 181 MAEGTIMSKKPSANGLRTVLKFQRVLSTRYFDVAGFPGRTLGLEETGGKQKTAGK 235 + T+ SK +ANGLRTVL QRV RYFD AGFPGRTLGL+ KQK AGK Sbjct: 563 ATQETVRSKY-AANGLRTVLAMQRVGEQRYFDAAGFPGRTLGLDGETTKQKAAGK 616 >ref|YP_001205267.1| putative signal peptide [Bradyrhizobium sp. ORS 278] emb|CAL77035.1| conserved hypothetical protein; putative membrane protein; putative signal peptide [Bradyrhizobium sp. ORS 278] Length = 618 Score = 345 bits (885), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 169/236 (71%), Positives = 197/236 (83%), Gaps = 2/236 (0%) Query: 1 VLGRDPAKPDVVIATNGGSDLIYLPNRDKKLADRVIKALLEQDYVSGLFVDYKLGTFPGT 60 VLG+DPAKPD+V+ATNGGSDLIYLPN DKKLA R +KALL QDYVSG+FVD KLG PGT Sbjct: 384 VLGKDPAKPDLVVATNGGSDLIYLPNGDKKLARRTVKALLAQDYVSGIFVDDKLGEIPGT 443 Query: 61 LPMSNLNLKGKAVTPNPSIVVNFRSW-SSGCEIPTNCSVQVADTVLRQGQGMHGSFSRGD 119 LP+S +NL+GKAVTP+P+IVVNFRS+ + GC+ PTNC V+VADTVLRQGQGMHGSF RGD Sbjct: 444 LPLSEINLQGKAVTPHPAIVVNFRSYVAPGCDQPTNCQVEVADTVLRQGQGMHGSFGRGD 503 Query: 120 TFNFTAAIGPDFKAGYVDPLPVSNADVGMTAAQLLGLRAPNNGGLIGRVMSEALPNGIVP 179 T+NF AAIGPDFKAG+VDPLPVSNADVG TAA+LL L+ G L+GRVM+EA+PNG P Sbjct: 504 TYNFMAAIGPDFKAGFVDPLPVSNADVGATAAKLLDLKVAPKGKLVGRVMTEAMPNGATP 563 Query: 180 KMAEGTIMSKKPSANGLRTVLKFQRVLSTRYFDVAGFPGRTLGLEETGGKQKTAGK 235 K A ++ P+A GLRTVLK QRV S RYFDVAGFPGRT+GL++ +QK A K Sbjct: 564 K-ATTDVIKSDPAAGGLRTVLKLQRVGSQRYFDVAGFPGRTVGLDDEAPQQKAAAK 618