BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0117.0017.p (398 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomo... 586 e-165 ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 1... 586 e-165 ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomo... 566 e-159 ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizob... 562 e-158 ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Br... 560 e-157 >ref|YP_570225.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisB5] gb|ABE40324.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisB5] Length = 487 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 290/396 (73%), Positives = 318/396 (80%), Gaps = 1/396 (0%) Query: 1 VIATVAREIGARAVFWNDIAHAPHQAVAREVEAALASDSIDSQIFRGDLLVDPKAIRNKN 60 +IA +AR++ A AV WN+I APH+AVA ++ AL+ ID RGDLL P +R K Sbjct: 92 IIAELARQVDASAVHWNEIEIAPHRAVADDLAEALSVAGIDHHRHRGDLLASPAEVRTKE 151 Query: 61 NRALRVFTPFWRRVQGLGDPPKPLPAPKRLTSIGGIASDAVDDWGLEPTRPDWAGGLRET 120 R LRVFTPFWRRV GLGDPPK LPAPK L++ G + D +D W LEPT PDWAGGLRE+ Sbjct: 152 GRGLRVFTPFWRRVLGLGDPPKLLPAPKTLSAAQGPSGDQLDSWMLEPTEPDWAGGLRES 211 Query: 121 WTPGGAAAQARLKRFLDEGISGYADDRDRPDRDGTSRLSPHLRFGEISPRQVWHAARFAA 180 WTPG AAQ L FLD + GY + RDRPD TSRLSPHLRFGEISPRQVW+AARFAA Sbjct: 212 WTPGEGAAQDNLTAFLD-ALPGYTEGRDRPDCAATSRLSPHLRFGEISPRQVWYAARFAA 270 Query: 181 AEDSRLAGDIDKFLSELGWREFCRHLLFDVPDMADRNLQEQFDAFPWKRNALALEAWQRG 240 AE +AGDIDKFLSELGWREFCRHLL D PD+A+RNLQ FDAFPW +A AL AWQRG Sbjct: 271 AERPAIAGDIDKFLSELGWREFCRHLLHDHPDLAERNLQASFDAFPWITDAAALHAWQRG 330 Query: 241 LTGYPIVDAGMRELWHSGVMHNRVRMVAASFLVKHLLIDWRTGEQWFWDTLVDADAGSNP 300 TGYPIVDAGMRELWH+GVMHNRVRMV ASFLVKHLLIDWR GEQWFWDTLVDADAGSNP Sbjct: 331 CTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNP 390 Query: 301 ANWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGGYVRRWVPELAQLPDDLIHQPWTATPI 360 ANWQWVAG GADAAPYFRVFNP+LQGEKFDP G YVRRWVPELA LP IHQPWTATP Sbjct: 391 ANWQWVAGSGADAAPYFRVFNPILQGEKFDPAGDYVRRWVPELASLPAKFIHQPWTATPF 450 Query: 361 ELASAAVELGKTYPLPIVDHKQGRERALAAYAKIRR 396 ELA+A V LG YP PI+DH+ GRERALAAYAK R+ Sbjct: 451 ELAAAGVTLGGNYPEPIIDHRVGRERALAAYAKTRQ 486 >ref|NP_771950.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] dbj|BAC50575.1| DNA photolyase [Bradyrhizobium japonicum USDA 110] Length = 442 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 301/396 (76%), Positives = 323/396 (81%) Query: 1 VIATVAREIGARAVFWNDIAHAPHQAVAREVEAALASDSIDSQIFRGDLLVDPKAIRNKN 60 VI ARE GARAV+WN IA APHQA+ R +EAALA +DSQ F GDLLV P AIRNK Sbjct: 46 VIPEEARESGARAVYWNGIAQAPHQAIERRLEAALAKLGVDSQSFPGDLLVPPSAIRNKE 105 Query: 61 NRALRVFTPFWRRVQGLGDPPKPLPAPKRLTSIGGIASDAVDDWGLEPTRPDWAGGLRET 120 R LRVFTPFWRRV LGDPPKPLPAPK+L I SD ++ W L PT+PDWAGGLRE Sbjct: 106 GRGLRVFTPFWRRVLSLGDPPKPLPAPKQLRPGPKIVSDRLESWQLAPTKPDWAGGLRER 165 Query: 121 WTPGGAAAQARLKRFLDEGISGYADDRDRPDRDGTSRLSPHLRFGEISPRQVWHAARFAA 180 WTPG A+A+ARL+ FL GYA DRDRPDR GTS LSPHLRFGE+SPRQVWHAARFAA Sbjct: 166 WTPGEASARARLRDFLKTIARGYAGDRDRPDRVGTSGLSPHLRFGELSPRQVWHAARFAA 225 Query: 181 AEDSRLAGDIDKFLSELGWREFCRHLLFDVPDMADRNLQEQFDAFPWKRNALALEAWQRG 240 AED+ L I+KFLSELGWREFCRHLL D PD+A NLQ FD FPW+ + L AWQRG Sbjct: 226 AEDAALGPGIEKFLSELGWREFCRHLLHDHPDLATENLQTNFDGFPWQSDGKVLAAWQRG 285 Query: 241 LTGYPIVDAGMRELWHSGVMHNRVRMVAASFLVKHLLIDWRTGEQWFWDTLVDADAGSNP 300 TGYPIVDAG+RELWH+GVMHNRVRMV ASFLVKHLLIDWR GE WFWDTLVDADAGSNP Sbjct: 286 RTGYPIVDAGLRELWHTGVMHNRVRMVVASFLVKHLLIDWRDGEAWFWDTLVDADAGSNP 345 Query: 301 ANWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGGYVRRWVPELAQLPDDLIHQPWTATPI 360 ANWQWVAGCGADAAPYFRVFNP LQGEKFDPDG YVRRWVPEL LP LIHQPW ATP Sbjct: 346 ANWQWVAGCGADAAPYFRVFNPQLQGEKFDPDGTYVRRWVPELQGLPAKLIHQPWQATPN 405 Query: 361 ELASAAVELGKTYPLPIVDHKQGRERALAAYAKIRR 396 ELASA V LGKTYP PIVDH +GRERAL+AYAKIR+ Sbjct: 406 ELASAGVTLGKTYPQPIVDHARGRERALSAYAKIRK 441 >ref|YP_782354.1| deoxyribodipyrimidine photolyase [Rhodopseudomonas palustris BisA53] gb|ABJ07374.1| Deoxyribodipyrimidine photo-lyase type I [Rhodopseudomonas palustris BisA53] Length = 483 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 286/397 (72%), Positives = 314/397 (79%) Query: 1 VIATVAREIGARAVFWNDIAHAPHQAVAREVEAALASDSIDSQIFRGDLLVDPKAIRNKN 60 V+A +ARE A V++NDIA AP + VA E+ A LA I GDLL P+ IR K Sbjct: 87 VVAGLARETNAEVVYYNDIAMAPARTVAAELAATLADHGIAVHQHPGDLLAAPETIRTKE 146 Query: 61 NRALRVFTPFWRRVQGLGDPPKPLPAPKRLTSIGGIASDAVDDWGLEPTRPDWAGGLRET 120 R LRVFTPFW+RV LGDP KPLPAP L ASD +DDW LEPT PDWAGGLR Sbjct: 147 GRGLRVFTPFWKRVLSLGDPAKPLPAPTALGPPPAAASDRLDDWALEPTAPDWAGGLRAA 206 Query: 121 WTPGGAAAQARLKRFLDEGISGYADDRDRPDRDGTSRLSPHLRFGEISPRQVWHAARFAA 180 W PG AAAQ L FL GI+GYA DRDRPDR GTS LSPHLRFGEI PRQ+WHAARFAA Sbjct: 207 WQPGEAAAQRALTDFLTTGIAGYAGDRDRPDRPGTSLLSPHLRFGEIGPRQIWHAARFAA 266 Query: 181 AEDSRLAGDIDKFLSELGWREFCRHLLFDVPDMADRNLQEQFDAFPWKRNALALEAWQRG 240 A +AGD+DKFLSELGWREFCRHLLFD D+A RNLQ FDAFPW + L AWQRG Sbjct: 267 AARPAIAGDVDKFLSELGWREFCRHLLFDHSDLATRNLQPAFDAFPWVEDPAGLRAWQRG 326 Query: 241 LTGYPIVDAGMRELWHSGVMHNRVRMVAASFLVKHLLIDWRTGEQWFWDTLVDADAGSNP 300 LTGYPIVDAGMR+LW +GVMHNRVRMV ASFLVKHLLIDWR GEQWFWDTLVDADAGSNP Sbjct: 327 LTGYPIVDAGMRQLWQTGVMHNRVRMVVASFLVKHLLIDWRCGEQWFWDTLVDADAGSNP 386 Query: 301 ANWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGGYVRRWVPELAQLPDDLIHQPWTATPI 360 NWQWVAGCGADAAPYFRVFNP+LQGEKFDPDG YVRR+VPELA+LP LIHQPWTATP+ Sbjct: 387 GNWQWVAGCGADAAPYFRVFNPILQGEKFDPDGAYVRRFVPELARLPAALIHQPWTATPL 446 Query: 361 ELASAAVELGKTYPLPIVDHKQGRERALAAYAKIRRK 397 ELASA V+LG YP PI++H++GRERALAAYA +R+ Sbjct: 447 ELASAGVQLGHNYPEPIIEHRRGRERALAAYATVRKT 483 >ref|ZP_08630311.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06690.1| deoxyribodipyrimidine photolyase [Bradyrhizobiaceae bacterium SG-6C] Length = 488 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 281/395 (71%), Positives = 319/395 (80%) Query: 1 VIATVAREIGARAVFWNDIAHAPHQAVAREVEAALASDSIDSQIFRGDLLVDPKAIRNKN 60 VI+ +A++I A +V W + A+ R+V AL + ++ FRGDLLV P ++RNK Sbjct: 92 VISDLAQDIEAASVHWIESDVPSQSAMERDVTVALKEIGVQARGFRGDLLVKPASLRNKE 151 Query: 61 NRALRVFTPFWRRVQGLGDPPKPLPAPKRLTSIGGIASDAVDDWGLEPTRPDWAGGLRET 120 R LRVFTPFW+R+ LGDPP+PLPAPK+L +ASD + W LEP PDWAGGLR+T Sbjct: 152 GRGLRVFTPFWKRILSLGDPPQPLPAPKKLKPGPAVASDDLASWNLEPKHPDWAGGLRDT 211 Query: 121 WTPGGAAAQARLKRFLDEGISGYADDRDRPDRDGTSRLSPHLRFGEISPRQVWHAARFAA 180 WTPG +AAQ RL FL+ GI GYA RDRPDRDGTSRLSPHLRFGEISPRQVWHAA FAA Sbjct: 212 WTPGESAAQTRLHDFLETGIKGYATLRDRPDRDGTSRLSPHLRFGEISPRQVWHAANFAA 271 Query: 181 AEDSRLAGDIDKFLSELGWREFCRHLLFDVPDMADRNLQEQFDAFPWKRNALALEAWQRG 240 A+ +A D+ KFLSELGWREF RHLLFD+PD+A++NLQ FDAFPW+R+A AL AWQRG Sbjct: 272 AQKPAIASDVGKFLSELGWREFSRHLLFDLPDLAEKNLQSSFDAFPWRRDAKALRAWQRG 331 Query: 241 LTGYPIVDAGMRELWHSGVMHNRVRMVAASFLVKHLLIDWRTGEQWFWDTLVDADAGSNP 300 TGYPIVDAGMRELWH+GVMHNRVRMV ASFLVKHLLIDWR GE+WFWDTLVDAD GSNP Sbjct: 332 RTGYPIVDAGMRELWHTGVMHNRVRMVVASFLVKHLLIDWRHGEKWFWDTLVDADPGSNP 391 Query: 301 ANWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGGYVRRWVPELAQLPDDLIHQPWTATPI 360 A+WQWVAG GADAAPYFRVFNPVLQGEKFDPDG YV RWVPELA+L LIHQPW ATP+ Sbjct: 392 ASWQWVAGSGADAAPYFRVFNPVLQGEKFDPDGAYVSRWVPELARLSAKLIHQPWEATPM 451 Query: 361 ELASAAVELGKTYPLPIVDHKQGRERALAAYAKIR 395 ELA+A V LGKTYP P+VDHK R RALAAYAK R Sbjct: 452 ELAAAGVTLGKTYPEPMVDHKAARARALAAYAKTR 486 >ref|YP_001240856.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] gb|ABQ36950.1| deoxyribodipyrimidine photo-lyase type I [Bradyrhizobium sp. BTAi1] Length = 481 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 281/397 (70%), Positives = 315/397 (79%) Query: 2 IATVAREIGARAVFWNDIAHAPHQAVAREVEAALASDSIDSQIFRGDLLVDPKAIRNKNN 61 I+ +ARE AV+WND+A +AVA EVEAAL + + S++F DLL+DP +R K+ Sbjct: 85 ISELAREASTSAVYWNDVAQTGPRAVAAEVEAALDAIGVKSRVFADDLLIDPAELRGKDG 144 Query: 62 RALRVFTPFWRRVQGLGDPPKPLPAPKRLTSIGGIASDAVDDWGLEPTRPDWAGGLRETW 121 R RVFTPFW+RV LGDPPKPLP P RL+S G+AS VD LEPT PDWAGGLR TW Sbjct: 145 RGPRVFTPFWKRVLALGDPPKPLPVPVRLSSPSGVASLTVDKLALEPTSPDWAGGLRTTW 204 Query: 122 TPGGAAAQARLKRFLDEGISGYADDRDRPDRDGTSRLSPHLRFGEISPRQVWHAARFAAA 181 G AAQARL +FL+ + GYA DRDRPD + TSRLSPHLRFGEISPRQ+WHAARFAA Sbjct: 205 RAGERAAQARLAKFLETTVRGYAADRDRPDIEATSRLSPHLRFGEISPRQIWHAARFAAE 264 Query: 182 EDSRLAGDIDKFLSELGWREFCRHLLFDVPDMADRNLQEQFDAFPWKRNALALEAWQRGL 241 + A IDKFLSELGWREF RHLLF+ PD+A RNLQ FDAFPW ++A AL AWQRG Sbjct: 265 QQPAFARGIDKFLSELGWREFSRHLLFNNPDLATRNLQPSFDAFPWSQDAAALRAWQRGQ 324 Query: 242 TGYPIVDAGMRELWHSGVMHNRVRMVAASFLVKHLLIDWRTGEQWFWDTLVDADAGSNPA 301 TGYPIVDAGMRELWH+G MHNRVRMVAAS LVKHLLIDWR GEQWFWDTLVDAD GSNPA Sbjct: 325 TGYPIVDAGMRELWHTGSMHNRVRMVAASLLVKHLLIDWRLGEQWFWDTLVDADPGSNPA 384 Query: 302 NWQWVAGCGADAAPYFRVFNPVLQGEKFDPDGGYVRRWVPELAQLPDDLIHQPWTATPIE 361 +WQWVAG GADAAPYFRVFNPVLQGEKFD G YVRRWVPELA+LP LIHQPW A P+E Sbjct: 385 SWQWVAGSGADAAPYFRVFNPVLQGEKFDSSGTYVRRWVPELARLPAALIHQPWAAKPLE 444 Query: 362 LASAAVELGKTYPLPIVDHKQGRERALAAYAKIRRKD 398 LA A V LG++YP P+VDH+ GRERALAAYA +R D Sbjct: 445 LAEAGVVLGRSYPAPVVDHRHGRERALAAYASLRTSD 481