BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0117.0001.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_948522.1| hypothetical protein RPA3183 [Rhodopseudomonas ...   132   1e-29
ref|YP_001205252.1| putative signal peptide [Bradyrhizobium sp. ...   132   2e-29
ref|NP_771954.1| hypothetical protein bll5314 [Bradyrhizobium ja...   130   1e-28
ref|ZP_08630314.1| hypothetical protein CSIRO_3419 [Bradyrhizobi...   125   2e-27
ref|YP_570228.1| hypothetical protein RPD_3101 [Rhodopseudomonas...   125   2e-27

>ref|NP_948522.1| hypothetical protein RPA3183 [Rhodopseudomonas palustris CGA009]
 ref|YP_001992568.1| hypothetical protein Rpal_3593 [Rhodopseudomonas palustris TIE-1]
 emb|CAE28624.1| unknown protein [Rhodopseudomonas palustris CGA009]
 gb|ACF02093.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 148

 Score =  132 bits (333), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/81 (80%), Positives = 71/81 (87%)

Query: 1  MRITPLVALLLSVLAATPARAVLHITRDHGGYVEEYKAKYKQIRERRERVVIDGICNSAC 60
          MR      LL  +L ATPARA LHITRDHGGYVEEYKAKY++IR+RRERV+IDGICNSAC
Sbjct: 1  MRTLFSSLLLPLMLLATPARADLHITRDHGGYVEEYKAKYQRIRDRRERVIIDGICNSAC 60

Query: 61 TLVFGIVPLNKICVTPRASIG 81
          TLVFGIVPLNKICVTPRAS+G
Sbjct: 61 TLVFGIVPLNKICVTPRASLG 81


>ref|YP_001205252.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL77019.1| conserved hypothetical protein; putative signal peptide
          [Bradyrhizobium sp. ORS 278]
          Length = 147

 Score =  132 bits (332), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/80 (77%), Positives = 72/80 (90%), Gaps = 2/80 (2%)

Query: 2  RITPLVALLLSVLAATPARAVLHITRDHGGYVEEYKAKYKQIRERRERVVIDGICNSACT 61
          R+ P V  +LS++AATPA A LHITRDHGGY+EEYKAKY+ IR+ R+RV+IDGICNSACT
Sbjct: 3  RLLPCV--VLSLIAATPAYADLHITRDHGGYIEEYKAKYRHIRDTRQRVIIDGICNSACT 60

Query: 62 LVFGIVPLNKICVTPRASIG 81
          LVFGIVPLN+ICVTPRASIG
Sbjct: 61 LVFGIVPLNRICVTPRASIG 80


>ref|NP_771954.1| hypothetical protein bll5314 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50579.1| bll5314 [Bradyrhizobium japonicum USDA 110]
          Length = 148

 Score =  130 bits (326), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/81 (81%), Positives = 73/81 (90%)

Query: 1  MRITPLVALLLSVLAATPARAVLHITRDHGGYVEEYKAKYKQIRERRERVVIDGICNSAC 60
          MRIT L  LLL + AATPARA LHITRDHGGYVEEYKAKYK++RE+ ERV+IDGICNSAC
Sbjct: 1  MRITLLSLLLLCLAAATPARAELHITRDHGGYVEEYKAKYKRVREKGERVIIDGICNSAC 60

Query: 61 TLVFGIVPLNKICVTPRASIG 81
          TLV GIVP+NKICVTPRAS+G
Sbjct: 61 TLVLGIVPMNKICVTPRASLG 81


>ref|ZP_08630314.1| hypothetical protein CSIRO_3419 [Bradyrhizobiaceae bacterium
          SG-6C]
 gb|EGP06693.1| hypothetical protein CSIRO_3419 [Bradyrhizobiaceae bacterium
          SG-6C]
          Length = 149

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/81 (77%), Positives = 70/81 (86%)

Query: 1  MRITPLVALLLSVLAATPARAVLHITRDHGGYVEEYKAKYKQIRERRERVVIDGICNSAC 60
          MRI   V++ L +LAA PARA L ITRDHGGYVEEYKAKY +IR R ERV+IDGICNSAC
Sbjct: 1  MRIAVFVSVALLLLAAMPARADLRITRDHGGYVEEYKAKYARIRARGERVIIDGICNSAC 60

Query: 61 TLVFGIVPLNKICVTPRASIG 81
          T+VFGIVPLNKICVTPRAS+G
Sbjct: 61 TMVFGIVPLNKICVTPRASLG 81


>ref|YP_570228.1| hypothetical protein RPD_3101 [Rhodopseudomonas palustris BisB5]
 gb|ABE40327.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 148

 Score =  125 bits (315), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 56/65 (86%), Positives = 63/65 (96%)

Query: 17 TPARAVLHITRDHGGYVEEYKAKYKQIRERRERVVIDGICNSACTLVFGIVPLNKICVTP 76
          +PARA LHITRDHGGYV EYKAKY++IR+RRERV+IDGICNSACT+VFGIVPLNKICVTP
Sbjct: 17 SPARADLHITRDHGGYVTEYKAKYERIRDRRERVIIDGICNSACTMVFGIVPLNKICVTP 76

Query: 77 RASIG 81
          RAS+G
Sbjct: 77 RASLG 81