BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0062.p (213 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771970.1| hypothetical protein bll5330 [Bradyrhizobium ja... 322 3e-86 ref|YP_001206281.1| putative NUDIX hydrolase [Bradyrhizobium sp.... 298 4e-79 ref|YP_001240911.1| hypothetical protein BBta_5001 [Bradyrhizobi... 291 4e-77 ref|YP_004108566.1| NUDIX hydrolase [Rhodopseudomonas palustris ... 287 8e-76 ref|YP_570238.1| NUDIX hydrolase [Rhodopseudomonas palustris Bis... 285 2e-75 >ref|NP_771970.1| hypothetical protein bll5330 [Bradyrhizobium japonicum USDA 110] dbj|BAC50595.1| bll5330 [Bradyrhizobium japonicum USDA 110] Length = 265 Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 158/204 (77%), Positives = 174/204 (85%) Query: 10 LYSGGEGLDGDALGFRIAAIRETFEESGILLARPQGSKHLVDAKRADEIATAHRAALNEG 69 LYSGGEGL GFRIAAIRETFEESGILLAR + S +DA+RA E+A HR ALNE Sbjct: 62 LYSGGEGLSEADRGFRIAAIRETFEESGILLARSRDSGTPIDARRAGELADKHRVALNEH 121 Query: 70 KIGFLKVLTDNGMVLALDELVPYAHWITPEGMPKRFDTWFFLAAAPPEQLGAHDGKESTD 129 KI FL +L DNG+ LALD LVPYAHWITPEGMPKRFDTWFFLAAAPP+QLGAHDG+ESTD Sbjct: 122 KISFLSILADNGLQLALDTLVPYAHWITPEGMPKRFDTWFFLAAAPPDQLGAHDGRESTD 181 Query: 130 SIWVSTREALEGGETGRFKLPFPTTRNLIRLGKQPNVGAALADSKGKPIVAVMPVMTKTA 189 SIWVS REA+EGGE+GRFKLPFPTTRNLIRL KQ +V AAL ++G IV VMPVMTKT Sbjct: 182 SIWVSPREAVEGGESGRFKLPFPTTRNLIRLAKQGSVDAALEHARGMSIVTVMPVMTKTE 241 Query: 190 TGRQLRIPKEAGYDGEVFDVGALG 213 TGRQLRIP+EAGYDGEVF+VGA+G Sbjct: 242 TGRQLRIPREAGYDGEVFEVGAVG 265 >ref|YP_001206281.1| putative NUDIX hydrolase [Bradyrhizobium sp. ORS 278] emb|CAL78057.1| conserved hypothetical protein; putative NUDIX hydrolase [Bradyrhizobium sp. ORS 278] Length = 267 Score = 298 bits (762), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 153/210 (72%), Positives = 174/210 (82%), Gaps = 1/210 (0%) Query: 5 AADPALYSGGEGLDGDALGFRIAAIRETFEESGILLARPQGSKHLVDAKRADEIATAHRA 64 A P LY+GG+GLD +ALGFRIA +RETFEESGILLAR +G+ L++A+ A +I AHR Sbjct: 58 AGTPELYAGGQGLDAEALGFRIAGVRETFEESGILLARRKGAVALIEAEAARQIEAAHRL 117 Query: 65 ALNEGKIGFLKVLTDNGMVLALDELVPYAHWITPEGMPKRFDTWFFLAAAPPEQLGAHDG 124 AL E KI F +V+ +G+VLALD LVPYAHWITPEGMPKRFDTWFFLAAAPP+QLGAHDG Sbjct: 118 ALCESKISFREVIERHGLVLALDALVPYAHWITPEGMPKRFDTWFFLAAAPPDQLGAHDG 177 Query: 125 KESTDSIWVSTREALEGGETGRFKLPFPTTRNLIRLGKQPNVGAALADSKGKPIVAVMPV 184 +ESTDSIWVS REAL GG+ GRFKLPFPTTRNLIRLGKQP V ALA ++ IV VMPV Sbjct: 178 RESTDSIWVSPREALAGGDDGRFKLPFPTTRNLIRLGKQPAVADALAAARVMDIVTVMPV 237 Query: 185 MTKTAT-GRQLRIPKEAGYDGEVFDVGALG 213 MTKTA GR+LRIP+EAGYDGEVF GA G Sbjct: 238 MTKTADGGRELRIPREAGYDGEVFAFGAAG 267 >ref|YP_001240911.1| hypothetical protein BBta_5001 [Bradyrhizobium sp. BTAi1] gb|ABQ37005.1| hypothetical protein BBta_5001 [Bradyrhizobium sp. BTAi1] Length = 267 Score = 291 bits (746), Expect = 4e-77, Method: Compositional matrix adjust. Identities = 157/213 (73%), Positives = 173/213 (81%), Gaps = 1/213 (0%) Query: 2 RWXAADPALYSGGEGLDGDALGFRIAAIRETFEESGILLARPQGSKHLVDAKRADEIATA 61 R A P LY+GG+ + +ALGFRIA IRETFEESGILLAR +GS L+DA A EI A Sbjct: 55 REIAGMPELYAGGDAVQAEALGFRIAGIRETFEESGILLARARGSGALIDAAAAREIEAA 114 Query: 62 HRAALNEGKIGFLKVLTDNGMVLALDELVPYAHWITPEGMPKRFDTWFFLAAAPPEQLGA 121 HR L EGK+ FL+VL +G+VLALD LVPYAHWITPEGMPKRFDTWFFLAAAPP+QLGA Sbjct: 115 HRLPLCEGKVSFLEVLERHGLVLALDALVPYAHWITPEGMPKRFDTWFFLAAAPPDQLGA 174 Query: 122 HDGKESTDSIWVSTREALEGGETGRFKLPFPTTRNLIRLGKQPNVGAALADSKGKPIVAV 181 HDG+ESTDSIWVS REAL GGE GRFKLPFPTTRNLIRLGKQP V ALA ++ IV V Sbjct: 175 HDGRESTDSIWVSPREALAGGEDGRFKLPFPTTRNLIRLGKQPAVADALAAARDMDIVTV 234 Query: 182 MPVMTKTAT-GRQLRIPKEAGYDGEVFDVGALG 213 MPVMTKTA GRQLRIP EAGYDGE+F+ GA G Sbjct: 235 MPVMTKTADGGRQLRIPPEAGYDGEIFEFGAAG 267 >ref|YP_004108566.1| NUDIX hydrolase [Rhodopseudomonas palustris DX-1] gb|ADU43833.1| NUDIX hydrolase [Rhodopseudomonas palustris DX-1] Length = 263 Score = 287 bits (734), Expect = 8e-76, Method: Compositional matrix adjust. Identities = 141/207 (68%), Positives = 164/207 (79%) Query: 2 RWXAADPALYSGGEGLDGDALGFRIAAIRETFEESGILLARPQGSKHLVDAKRADEIATA 61 R A P LY+G +G G AL FRIAAIRETFEESGILLARP+GS LV A RA EI A Sbjct: 53 RDIVARPELYAGVDGSVGPALEFRIAAIRETFEESGILLARPRGSDTLVAASRAAEIEAA 112 Query: 62 HRAALNEGKIGFLKVLTDNGMVLALDELVPYAHWITPEGMPKRFDTWFFLAAAPPEQLGA 121 HR AL +G I F ++L DN +VLALD LVPYAHWITPE +PKRFDTWFFLA APPEQLG Sbjct: 113 HRKALCDGSIAFAQILADNELVLALDLLVPYAHWITPEKLPKRFDTWFFLAEAPPEQLGM 172 Query: 122 HDGKESTDSIWVSTREALEGGETGRFKLPFPTTRNLIRLGKQPNVGAALADSKGKPIVAV 181 HDG E+TDSIW+S REAL+GG++GRF LPFPTTRNLIRLG+QP+V AAL ++ + IV V Sbjct: 173 HDGGETTDSIWLSPREALDGGDSGRFTLPFPTTRNLIRLGQQPSVAAALDHARAQSIVTV 232 Query: 182 MPVMTKTATGRQLRIPKEAGYDGEVFD 208 +P+M+K R LRIP EAGYDGE+F+ Sbjct: 233 LPIMSKDGDKRLLRIPAEAGYDGELFE 259 >ref|YP_570238.1| NUDIX hydrolase [Rhodopseudomonas palustris BisB5] gb|ABE40337.1| NUDIX hydrolase [Rhodopseudomonas palustris BisB5] Length = 264 Score = 285 bits (730), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 140/203 (68%), Positives = 159/203 (78%) Query: 6 ADPALYSGGEGLDGDALGFRIAAIRETFEESGILLARPQGSKHLVDAKRADEIATAHRAA 65 A P L+ E AL FRIAAIRETFEESGILLARP+GS LV A RA EI +HR A Sbjct: 58 ARPELFVSAEADCEPALEFRIAAIRETFEESGILLARPRGSDQLVAASRAAEIEASHRTA 117 Query: 66 LNEGKIGFLKVLTDNGMVLALDELVPYAHWITPEGMPKRFDTWFFLAAAPPEQLGAHDGK 125 L EGKI F ++L DN +V+ALD LVPYA WITPE +PKRFDTWFFLA APPEQLG HDGK Sbjct: 118 LCEGKISFAEILADNQLVMALDLLVPYARWITPEKLPKRFDTWFFLAEAPPEQLGMHDGK 177 Query: 126 ESTDSIWVSTREALEGGETGRFKLPFPTTRNLIRLGKQPNVGAALADSKGKPIVAVMPVM 185 ESTDSIW+S EA+EGGE+GRF LPFPTTRNLIRLGKQ +V AL S+G+PIV VMP++ Sbjct: 178 ESTDSIWLSPNEAIEGGESGRFTLPFPTTRNLIRLGKQLSVRQALEASRGQPIVTVMPIL 237 Query: 186 TKTATGRQLRIPKEAGYDGEVFD 208 ++ R LRIP EAGYDGEVF+ Sbjct: 238 SRDGDKRTLRIPAEAGYDGEVFE 260