BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0061.p (302 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001976619.1| permease [Rhizobium etli CIAT 652] >gi|19069... 409 e-112 ref|YP_002973915.1| hypothetical protein Rleg_0065 [Rhizobium le... 399 e-109 ref|YP_467954.1| permease [Rhizobium etli CFN 42] >gi|86280164|g... 387 e-105 ref|YP_002279578.1| hypothetical protein Rleg2_0049 [Rhizobium l... 382 e-104 ref|YP_004608769.1| hypothetical protein Mesop_0180 [Mesorhizobi... 381 e-104 >ref|YP_001976619.1| permease [Rhizobium etli CIAT 652] gb|ACE89441.1| putative permease protein [Rhizobium etli CIAT 652] Length = 304 Score = 409 bits (1052), Expect = e-112, Method: Compositional matrix adjust. Identities = 208/299 (69%), Positives = 249/299 (83%) Query: 4 THRQPSMGFELALLLALATMWGGSYTFIKLGVATIPPITLIAARTAIAGLLLLAIMRMRG 63 T + P EL LLL LAT+WG SYTFIK+GV TIPP+TLIAART IAG +LLA++R R Sbjct: 3 TPQNPKPARELVLLLVLATLWGSSYTFIKIGVETIPPVTLIAARTLIAGAILLAVLRHRR 62 Query: 64 VTMPADGATWVRFIFQACLNSVIPWTLIAWGERFVDAGLATILNSASPIFTFLFTAAITR 123 V +P D A W RF QACLNSVIP+TLIAW E+ VDAGLA ILNSA+PIFTFL T +TR Sbjct: 63 VRLPRDPAIWRRFFVQACLNSVIPFTLIAWAEQSVDAGLAVILNSATPIFTFLLTVVMTR 122 Query: 124 HEAASLRKLFGVISGMAGICLIVGVDAFRDLGQGILAEVAIVAATICYACAAIFSRGFKG 183 HE A+LRKLFGV++G+AGICL++GV+A LG+ ++A++AI+ ATICYA AAIFS+ FKG Sbjct: 123 HEPATLRKLFGVVAGLAGICLVIGVEALGGLGESLIAQLAIILATICYAGAAIFSKNFKG 182 Query: 184 LDPMAPAAGSLIAGAAILVPLSLVVERPWTLSPSTTSLAALLALAMFSTAIAFAIYFRLI 243 LDP PAAGSLI+GA IL+P+SL+V+RPWTL PS S+ ALLAL+ FSTA+AFAIYFRL+ Sbjct: 183 LDPAVPAAGSLISGAVILMPVSLLVDRPWTLDPSAESMLALLALSAFSTALAFAIYFRLV 242 Query: 244 QTLGSVGTTAQAYLRVPIGVALSVMVLGERLSPTAWIGLACVVIGVAAMTIPARRIATA 302 QTLGSVGTT+QAYLRVPIGVA+ ++ LGERLSPTAWIGL CV++GV AMTIPARR A Sbjct: 243 QTLGSVGTTSQAYLRVPIGVAIGIVFLGERLSPTAWIGLICVILGVIAMTIPARRTTQA 301 >ref|YP_002973915.1| hypothetical protein Rleg_0065 [Rhizobium leguminosarum bv. trifolii WSM1325] gb|ACS54376.1| protein of unknown function DUF6 transmembrane [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 307 Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust. Identities = 204/297 (68%), Positives = 247/297 (83%) Query: 2 TATHRQPSMGFELALLLALATMWGGSYTFIKLGVATIPPITLIAARTAIAGLLLLAIMRM 61 T + ++ EL LLL LAT+WG SY+FIK+GV TIPPITLIAART IAG +LLA++R Sbjct: 3 TMMRQNSNLARELFLLLVLATLWGSSYSFIKIGVETIPPITLIAARTLIAGGILLAVLRH 62 Query: 62 RGVTMPADGATWVRFIFQACLNSVIPWTLIAWGERFVDAGLATILNSASPIFTFLFTAAI 121 R V +P D ATW RF QACLNSV+P+TLIAW E+ VDAGLA ILNSA+PIFTFL T I Sbjct: 63 RRVRLPRDLATWRRFFVQACLNSVVPFTLIAWAEQSVDAGLAVILNSATPIFTFLLTVLI 122 Query: 122 TRHEAASLRKLFGVISGMAGICLIVGVDAFRDLGQGILAEVAIVAATICYACAAIFSRGF 181 TRHE +LR+LFGV++G+AGICL++GV+A LG+ ++A++AI+ ATICYA AAIFS+ F Sbjct: 123 TRHEQVTLRRLFGVMAGLAGICLVIGVEALGGLGESLMAQLAIILATICYAGAAIFSKNF 182 Query: 182 KGLDPMAPAAGSLIAGAAILVPLSLVVERPWTLSPSTTSLAALLALAMFSTAIAFAIYFR 241 KGLDP PAAGSLI+GA +L+P+SLVV+RPW + PS S+ ALLAL+ FSTA+AF IYFR Sbjct: 183 KGLDPAVPAAGSLISGAVVLLPMSLVVDRPWEIDPSPASMLALLALSAFSTALAFVIYFR 242 Query: 242 LIQTLGSVGTTAQAYLRVPIGVALSVMVLGERLSPTAWIGLACVVIGVAAMTIPARR 298 L+QTLGSVGTTAQAYLRVPIGVA+ ++ LGERLSPTAWIGL CV+ GVAAMTIPARR Sbjct: 243 LVQTLGSVGTTAQAYLRVPIGVAIGIVFLGERLSPTAWIGLVCVIAGVAAMTIPARR 299 >ref|YP_467954.1| permease [Rhizobium etli CFN 42] gb|ABC89227.1| putative permease protein [Rhizobium etli CFN 42] Length = 303 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 199/295 (67%), Positives = 243/295 (82%) Query: 1 MTATHRQPSMGFELALLLALATMWGGSYTFIKLGVATIPPITLIAARTAIAGLLLLAIMR 60 M T + P + EL LLL LAT+WG SYTFIK+GV TIPP+TLIA RT IAG +LLA++R Sbjct: 1 MPMTPQNPKLAKELVLLLVLATLWGSSYTFIKIGVETIPPVTLIAVRTLIAGAILLAVLR 60 Query: 61 MRGVTMPADGATWVRFIFQACLNSVIPWTLIAWGERFVDAGLATILNSASPIFTFLFTAA 120 R V +P D ATW F+ QACLNSVIP+TLIAW E+ VDAGLA ILNSA+PIFTFL T + Sbjct: 61 HRHVRLPRDRATWRLFVVQACLNSVIPFTLIAWAEQSVDAGLAVILNSATPIFTFLLTVS 120 Query: 121 ITRHEAASLRKLFGVISGMAGICLIVGVDAFRDLGQGILAEVAIVAATICYACAAIFSRG 180 ITRHE A+ RKLFGV+SG+AGICL++GV+A LG+ ++A++AI+ ATICYA AAIFS+ Sbjct: 121 ITRHEQATARKLFGVVSGLAGICLVIGVEALGGLGESLMAQLAIILATICYAGAAIFSKN 180 Query: 181 FKGLDPMAPAAGSLIAGAAILVPLSLVVERPWTLSPSTTSLAALLALAMFSTAIAFAIYF 240 F+GLDP PAAGSLI+GA IL+P+SL+V+RPW L PS S+ ALL L+ FSTA+AF IYF Sbjct: 181 FRGLDPAVPAAGSLISGAVILMPVSLIVDRPWGLDPSAASVLALLGLSAFSTALAFTIYF 240 Query: 241 RLIQTLGSVGTTAQAYLRVPIGVALSVMVLGERLSPTAWIGLACVVIGVAAMTIP 295 RL+QTLGSVGTT+QAYLRVPIGVA+ ++ LGE LSPTAWIGL CV++GV AMT+P Sbjct: 241 RLVQTLGSVGTTSQAYLRVPIGVAIGIVFLGESLSPTAWIGLTCVILGVIAMTMP 295 >ref|YP_002279578.1| hypothetical protein Rleg2_0049 [Rhizobium leguminosarum bv. trifolii WSM2304] gb|ACI53352.1| protein of unknown function DUF6 transmembrane [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 304 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 209/298 (70%), Positives = 247/298 (82%) Query: 4 THRQPSMGFELALLLALATMWGGSYTFIKLGVATIPPITLIAARTAIAGLLLLAIMRMRG 63 T + P + EL LLLALAT+WG SYTFIK+GV TIPP+TLIA RT IAG +LLA++R R Sbjct: 2 TPQNPKLARELLLLLALATLWGSSYTFIKIGVETIPPVTLIAVRTLIAGGILLAVLRYRR 61 Query: 64 VTMPADGATWVRFIFQACLNSVIPWTLIAWGERFVDAGLATILNSASPIFTFLFTAAITR 123 + +P DG TW RF+ QACLNSVIP+TLIAW E+ VDAGLA ILNSA+PIFTFL T I R Sbjct: 62 IRLPTDGETWRRFVVQACLNSVIPFTLIAWAEQSVDAGLAVILNSATPIFTFLLTVLIAR 121 Query: 124 HEAASLRKLFGVISGMAGICLIVGVDAFRDLGQGILAEVAIVAATICYACAAIFSRGFKG 183 HE + RKLFGVISG+AGICL++GV+ LG+ +LA++AI+ AT CYA AAIFS+ FKG Sbjct: 122 HEQVTARKLFGVISGLAGICLVIGVEVLGGLGESLLAQLAIILATACYAGAAIFSKNFKG 181 Query: 184 LDPMAPAAGSLIAGAAILVPLSLVVERPWTLSPSTTSLAALLALAMFSTAIAFAIYFRLI 243 LDP PAAGSLI+GA IL+P+SLVV+RPWTL PS S+ ALLAL+ FSTA+AFAIYFRL+ Sbjct: 182 LDPAVPAAGSLISGAVILLPVSLVVDRPWTLDPSAASILALLALSAFSTALAFAIYFRLV 241 Query: 244 QTLGSVGTTAQAYLRVPIGVALSVMVLGERLSPTAWIGLACVVIGVAAMTIPARRIAT 301 QTLGSVGTT+QAYLRVPIGVA+ ++ LGERLSPTAWIGL CV+ GVAAMTIPAR AT Sbjct: 242 QTLGSVGTTSQAYLRVPIGVAIGIVFLGERLSPTAWIGLVCVIFGVAAMTIPARVRAT 299 >ref|YP_004608769.1| hypothetical protein Mesop_0180 [Mesorhizobium opportunistum WSM2075] gb|AEH84675.1| protein of unknown function DUF6 transmembrane [Mesorhizobium opportunistum WSM2075] Length = 300 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 194/279 (69%), Positives = 227/279 (81%) Query: 24 WGGSYTFIKLGVATIPPITLIAARTAIAGLLLLAIMRMRGVTMPADGATWVRFIFQACLN 83 WG SYTFIK+GV TIPPIT IA RT IAG +LLAI+ RG+ MP+D A+W RF FQACLN Sbjct: 21 WGASYTFIKIGVETIPPITFIATRTLIAGAILLAIIHWRGLAMPSDAASWRRFAFQACLN 80 Query: 84 SVIPWTLIAWGERFVDAGLATILNSASPIFTFLFTAAITRHEAASLRKLFGVISGMAGIC 143 SV+P+TLIA ER VDAGLATILN+ SPIFTFL TA ITRHE +LRKL GV +G+AGIC Sbjct: 81 SVVPFTLIAAAERSVDAGLATILNATSPIFTFLLTALITRHEPVTLRKLVGVGAGIAGIC 140 Query: 144 LIVGVDAFRDLGQGILAEVAIVAATICYACAAIFSRGFKGLDPMAPAAGSLIAGAAILVP 203 LI+G +A LG + A+VAIV AT+CYA AAIF RGFKGLDPM PAAGS++ GA +LVP Sbjct: 141 LIIGTEALGGLGHELWAQVAIVVATVCYAGAAIFGRGFKGLDPMLPAAGSMLCGAVMLVP 200 Query: 204 LSLVVERPWTLSPSTTSLAALLALAMFSTAIAFAIYFRLIQTLGSVGTTAQAYLRVPIGV 263 LSLVV++PWTL+PS S+ ALL L++FSTA+AF IYFRLI TLGSVGTT+QAYLRVPIGV Sbjct: 201 LSLVVDQPWTLTPSLASILALLGLSIFSTALAFVIYFRLIHTLGSVGTTSQAYLRVPIGV 260 Query: 264 ALSVMVLGERLSPTAWIGLACVVIGVAAMTIPARRIATA 302 + + LGE L PT W+G+ACVV GVAAMTIP R+ A A Sbjct: 261 GIGAVFLGETLGPTVWLGMACVVAGVAAMTIPVRKPALA 299