BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0055.p         (202 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771964.1| hypothetical protein bll5324 [Bradyrhizobium ja...   149   2e-34
ref|YP_001206277.1| hypothetical protein BRADO4305 [Bradyrhizobi...   134   7e-30
ref|YP_001240906.1| hypothetical protein BBta_4996 [Bradyrhizobi...   122   4e-26
ref|YP_532388.1| hypothetical protein RPC_2518 [Rhodopseudomonas...   103   1e-20
ref|YP_781619.1| hypothetical protein RPE_2702 [Rhodopseudomonas...   100   1e-19

>ref|NP_771964.1| hypothetical protein bll5324 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50589.1| bll5324 [Bradyrhizobium japonicum USDA 110]
          Length = 205

 Score =  149 bits (376), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 96/125 (76%), Gaps = 4/125 (3%)

Query: 80  EPTTVGVATAPQGTEEARPSGPGAER---SPLDKLRIASQSWRRGGLGSKALVTLTLRNA 136
           +P    V  AP G + A    PG+E    + LD+LRI+SQ+WRRGGLGSKALVT TLRN 
Sbjct: 81  KPELASVEMAPSG-DAAVAVTPGSEAQAAAELDRLRISSQTWRRGGLGSKALVTFTLRND 139

Query: 137 NDFAVKDIEIACAFIRRDGRPLTERKRLISDTIAMKSRKTYSRMLVGFVNVNANKAKCSV 196
           ND+AVKD+ I CAF RRDG  LT+R R+++DT++MKSRKT++R+ VG+VNVNA++AKCS+
Sbjct: 140 NDYAVKDLAIVCAFARRDGSHLTDRSRVLADTVSMKSRKTFARIPVGYVNVNADQAKCSL 199

Query: 197 VTASR 201
           V A R
Sbjct: 200 VAARR 204


>ref|YP_001206277.1| hypothetical protein BRADO4305 [Bradyrhizobium sp. ORS 278]
 emb|CAL78053.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 238

 Score =  134 bits (337), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 91/128 (71%), Gaps = 6/128 (4%)

Query: 81  PTTVGVATAPQGTEE-----ARPSGPGAERSP-LDKLRIASQSWRRGGLGSKALVTLTLR 134
           P ++G A +P          A+P  P A  S  L  LRI+SQSWRRGGLGSKALVT TLR
Sbjct: 111 PASLGAAHSPMDANASLRSVAQPERPAAVNSDVLSGLRISSQSWRRGGLGSKALVTFTLR 170

Query: 135 NANDFAVKDIEIACAFIRRDGRPLTERKRLISDTIAMKSRKTYSRMLVGFVNVNANKAKC 194
           N NDFAVKD+EI+CAF RRDG  +T+R+R++   +  +SRKT++ + VGFVNVN + AKC
Sbjct: 171 NTNDFAVKDVEISCAFNRRDGGHVTDRRRIVPGEVRSQSRKTFAAVHVGFVNVNVSTAKC 230

Query: 195 SVVTASRL 202
           ++V A+++
Sbjct: 231 ALVAATKI 238


>ref|YP_001240906.1| hypothetical protein BBta_4996 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37000.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 200

 Score =  122 bits (305), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/203 (41%), Positives = 118/203 (58%), Gaps = 19/203 (9%)

Query: 16  LLPLIALAGI--AAWFMLPEPSDAGDQDVW--PVSSSMVRTAQNASTGAQPAQITNQAAR 71
           +L L ALAG+  AA  ++    DA   DV   P++S     A NA  G +    T+    
Sbjct: 1   MLGLAALAGVIVAAGLLMMSLDDAETADVGLAPLTSDQ---ASNADAGDEDGAGTSHGLP 57

Query: 72  DALAAPAD-EPTTVGV----ATAPQGT---EEARPSG---PGAERSP-LDKLRIASQSWR 119
            A+   A    T++G     A +P G+     AR +    PG + S  L  +RI+SQSWR
Sbjct: 58  LAVTVGAGGSGTSIGSPLSSAASPGGSVLDANARLTSAAQPGLQDSSVLSGVRISSQSWR 117

Query: 120 RGGLGSKALVTLTLRNANDFAVKDIEIACAFIRRDGRPLTERKRLISDTIAMKSRKTYSR 179
           RGGLGS+ALVT TLRN + FA+KD+EI CAF R DG PLT R+R++   +    R+T+  
Sbjct: 118 RGGLGSRALVTFTLRNTHPFAIKDVEINCAFGRDDGGPLTARRRVVPGLVKPGGRRTFVG 177

Query: 180 MLVGFVNVNANKAKCSVVTASRL 202
           + VGFVNVN + AKC++V A+++
Sbjct: 178 VHVGFVNVNVSSAKCALVAATKI 200


>ref|YP_532388.1| hypothetical protein RPC_2518 [Rhodopseudomonas palustris BisB18]
 gb|ABD88069.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 172

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/92 (48%), Positives = 67/92 (72%)

Query: 110 KLRIASQSWRRGGLGSKALVTLTLRNANDFAVKDIEIACAFIRRDGRPLTERKRLISDTI 169
           ++ +  QSW+RGG+GSKAL + T+RN N F +KD+EI CAF   DG   T+R+R++ +T+
Sbjct: 80  RISLVRQSWKRGGMGSKALASFTVRNRNGFPIKDLEILCAFRSDDGSYATQRRRVLHETV 139

Query: 170 AMKSRKTYSRMLVGFVNVNANKAKCSVVTASR 201
             +SRKT++  L+G VN+NA  AKC ++ ASR
Sbjct: 140 KTRSRKTFTDTLIGHVNLNATYAKCRLLGASR 171


>ref|YP_781619.1| hypothetical protein RPE_2702 [Rhodopseudomonas palustris BisA53]
 gb|ABJ06639.1| hypothetical protein RPE_2702 [Rhodopseudomonas palustris BisA53]
          Length = 196

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/96 (46%), Positives = 68/96 (70%), Gaps = 1/96 (1%)

Query: 106 SPLDKLRIASQSWRRGGLGSKALVTLTLRNANDFAVKDIEIACAFIRRDGRPLTERKRLI 165
           +PL  +R+A QS +RGGLGS+   T T+RN +DFA+KD+EI CAF  R+G   T+R+ ++
Sbjct: 101 APLSGIRLARQSLKRGGLGSRVRATFTVRNRHDFAIKDVEIQCAFRSRNGYT-TQRRHVL 159

Query: 166 SDTIAMKSRKTYSRMLVGFVNVNANKAKCSVVTASR 201
            DTI  +SR+T+S +LVG +NV   + +C ++ A R
Sbjct: 160 HDTIEPRSRETFSNVLVGHINVTTTRGRCKLLGAQR 195