BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0053.p         (135 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772175.1| hypothetical protein bll5535 [Bradyrhizobium ja...   108   3e-22
ref|YP_570056.1| hypothetical protein RPD_2928 [Rhodopseudomonas...   102   2e-20
ref|YP_001205018.1| putative signal peptide [Bradyrhizobium sp. ...    96   1e-18
ref|YP_001241099.1| hypothetical protein BBta_5201 [Bradyrhizobi...    96   3e-18
ref|YP_532237.1| hypothetical protein RPC_2365 [Rhodopseudomonas...    94   6e-18

>ref|NP_772175.1| hypothetical protein bll5535 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC50800.1| bll5535 [Bradyrhizobium japonicum USDA 110]
          Length = 129

 Score =  108 bits (270), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 87/141 (61%), Gaps = 19/141 (13%)

Query: 1   MKHIILALALFCPAAALAQGTTPAPADADKPAATSQPMVGDKPLVQV---GKKSAAKKGE 57
           M+ I+   A+   A+A AQ        ADKP     PMVGDKPLVQV   G K+  K+  
Sbjct: 1   MRMILAVAAVLYSASAFAQ--------ADKP-----PMVGDKPLVQVKPKGTKAGTKEAA 47

Query: 58  KPAAPGKP---QSVAQKLQACQDIDDATKERLICYDEIFKPQPKPKAAPAKGVNDCRFVK 114
              A       QS+A +LQAC D+DD TK+RL CYD +  P PKPK A AKG  DCRF K
Sbjct: 48  AKPAAAPKGKPQSIAARLQACLDLDDGTKDRLNCYDAVIPPAPKPKPAKAKGYADCRFFK 107

Query: 115 EEDERLTCYNGFADKIPRLPR 135
           EEDERL C+NGFA+ IP+LP+
Sbjct: 108 EEDERLACFNGFAESIPKLPK 128


>ref|YP_570056.1| hypothetical protein RPD_2928 [Rhodopseudomonas palustris BisB5]
 gb|ABE40155.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 136

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/107 (57%), Positives = 75/107 (70%), Gaps = 10/107 (9%)

Query: 38  MVGDKPLVQV---GKKSAAKKGE-KPAAPGKPQSVAQKLQACQDIDDATKERLICYDEIF 93
           MVGD+PLVQV   G+K A    + KPA PGK QS+A +LQAC +I+D +K RL CYD IF
Sbjct: 30  MVGDRPLVQVKPRGEKIATTDADAKPAKPGK-QSIAVQLQACLEIEDGSKGRLDCYDAIF 88

Query: 94  KPQPK-----PKAAPAKGVNDCRFVKEEDERLTCYNGFADKIPRLPR 135
            P+PK      K   AK V DCRF KEEDERL C+NGFA+ +P+LP+
Sbjct: 89  PPKPKALKPGAKQKAAKAVADCRFTKEEDERLACFNGFAESVPKLPK 135


>ref|YP_001205018.1| putative signal peptide [Bradyrhizobium sp. ORS 278]
 emb|CAL76781.1| conserved hypothetical protein; putative signal peptide
           [Bradyrhizobium sp. ORS 278]
          Length = 123

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/137 (51%), Positives = 85/137 (62%), Gaps = 17/137 (12%)

Query: 1   MKHIILALA--LFCPAAALAQGTTPAPADADKPAATSQPMVGDKPLVQVGKKSAAKKGEK 58
           MK  +L+LA  LFC  +ALAQ              +  PMVGD+PLVQV  K A      
Sbjct: 1   MKKTMLSLAAALFC-TSALAQ--------------SGAPMVGDRPLVQVKPKGAKGTKTA 45

Query: 59  PAAPGKPQSVAQKLQACQDIDDATKERLICYDEIFKPQPKPKAAPAKGVNDCRFVKEEDE 118
            AAP KPQS   KLQAC +I+D TKERL CYD +  P  KPKA  AK V DC+F KE+DE
Sbjct: 46  AAAPAKPQSAGAKLQACLEIEDGTKERLDCYDAVIPPAAKPKAMKAKAVADCKFTKEQDE 105

Query: 119 RLTCYNGFADKIPRLPR 135
           RL C+NGF + +P+LP+
Sbjct: 106 RLACFNGFVESMPKLPK 122


>ref|YP_001241099.1| hypothetical protein BBta_5201 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37193.1| hypothetical protein BBta_5201 [Bradyrhizobium sp. BTAi1]
          Length = 119

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/137 (50%), Positives = 81/137 (59%), Gaps = 21/137 (15%)

Query: 1   MKHIILALA--LFCPAAALAQGTTPAPADADKPAATSQPMVGDKPLVQVGKKSAAKKGEK 58
           MK  IL+LA  LFC  +ALAQ               + PMVGD+PLVQV  K A      
Sbjct: 1   MKKTILSLAAALFC-TSALAQ---------------NAPMVGDRPLVQVKPKGAKTAAAA 44

Query: 59  PAAPGKPQSVAQKLQACQDIDDATKERLICYDEIFKPQPKPKAAPAKGVNDCRFVKEEDE 118
           PA P        KLQAC +IDD TKERL CYD +  P  KPKA  AK V DC+F KEEDE
Sbjct: 45  PAKPQSAAV---KLQACLEIDDGTKERLNCYDAVIPPAAKPKAMKAKTVADCKFTKEEDE 101

Query: 119 RLTCYNGFADKIPRLPR 135
           RL C+NGF + +P+LP+
Sbjct: 102 RLACFNGFVENMPKLPK 118


>ref|YP_532237.1| hypothetical protein RPC_2365 [Rhodopseudomonas palustris BisB18]
 gb|ABD87918.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 123

 Score = 94.4 bits (233), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 79/129 (61%), Gaps = 21/129 (16%)

Query: 1   MKHIILALALFCPAAALAQGTTPAPADADKPAATSQPMVGDKPLVQVGKKSAAKKGEKPA 60
           MK ++L L +   AAA AQ T P             P VGD+PL+Q+  K AA K     
Sbjct: 10  MKRLLLPLVVLYSAAASAQ-TVP-------------PTVGDRPLLQIKPKVAAAK----- 50

Query: 61  APGKPQSVAQKLQACQDIDDATKERLICYDEIFKPQPKPKAAPAKGVNDCRFVKEEDERL 120
            PGKP S+  +LQAC +I+D +KERL CYD +  PQPKPK    K V DCRF KE+DERL
Sbjct: 51  -PGKP-SLPSQLQACLEIEDGSKERLDCYDALIAPQPKPKPPKVKAVTDCRFTKEQDERL 108

Query: 121 TCYNGFADK 129
           +C+NGF +K
Sbjct: 109 SCFNGFVEK 117