BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0050.p         (161 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001186691.1| hypothetical protein Pmen_1194 [Pseudomonas ...   100   9e-20
ref|YP_003747021.1| hypothetical protein RCFBP_21264 [Ralstonia ...    92   3e-17
emb|CBJ39473.1| conserved protein of unknown function [Ralstonia...    92   3e-17
ref|ZP_00945056.1| hypothetical protein RRSL_02556 [Ralstonia so...    90   1e-16
ref|YP_435695.1| hypothetical protein HCH_10017 [Hahella chejuen...    90   1e-16

>ref|YP_001186691.1| hypothetical protein Pmen_1194 [Pseudomonas mendocina ymp]
 gb|ABP83959.1| hypothetical protein Pmen_1194 [Pseudomonas mendocina ymp]
          Length = 132

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 68/111 (61%), Gaps = 7/111 (6%)

Query: 38  KAEEWRRIQTQRAAERQRLR-------DYKIALARDQVAVDTTRLAPSNSYSTPDFVLRG 90
           K+ + RR + ++A ER++L+         ++A   D V VD + LAP NSY  P FV RG
Sbjct: 2   KSNKQRRREIRQARERRKLKKATPARPSTRLAAPADSVPVDRSNLAPYNSYGDPIFVRRG 61

Query: 91  TYRPEPFVCKDCGVAEVWTPLQQKWWYETAKGDVFTAAVRCRACRTRERAR 141
            Y  + F C DCGV + WT  QQKWWYE  +G V++ A+RCRACR  +R R
Sbjct: 62  WYEDQAFTCHDCGVQQTWTAAQQKWWYEGCEGQVYSTAIRCRACRLNKRIR 112


>ref|YP_003747021.1| hypothetical protein RCFBP_21264 [Ralstonia solanacearum CFBP2957]
 emb|CBJ44439.1| conserved protein of unknown function [Ralstonia solanacearum
           CFBP2957]
          Length = 127

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 51/80 (63%)

Query: 64  ARDQVAVDTTRLAPSNSYSTPDFVLRGTYRPEPFVCKDCGVAEVWTPLQQKWWYETAKGD 123
           +R  V VD   LAPSNSY  P FV RG Y    F+C DC   EVWT  QQKWWYE AKG 
Sbjct: 37  SRGSVLVDKWLLAPSNSYGEPAFVTRGYYVDVHFICSDCASQEVWTAAQQKWWYEVAKGY 96

Query: 124 VFTAAVRCRACRTRERARKS 143
           V++ A RC ACR + R+ ++
Sbjct: 97  VYSTAARCLACRRQRRSGRT 116


>emb|CBJ39473.1| conserved protein of unknown function [Ralstonia solanacearum
           CMR15]
          Length = 87

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/73 (58%), Positives = 49/73 (67%)

Query: 68  VAVDTTRLAPSNSYSTPDFVLRGTYRPEPFVCKDCGVAEVWTPLQQKWWYETAKGDVFTA 127
           + VD   LAPSNSY  P+FV RG Y   PF C+DCG  EVW   QQKWWYE AKG V + 
Sbjct: 1   MLVDKWLLAPSNSYGEPEFVRRGYYIDLPFTCRDCGSQEVWAAAQQKWWYEEAKGYVDST 60

Query: 128 AVRCRACRTRERA 140
           AVRC ACR + R+
Sbjct: 61  AVRCLACRRQRRS 73


>ref|ZP_00945056.1| hypothetical protein RRSL_02556 [Ralstonia solanacearum UW551]
 ref|YP_002258459.1| hypothetical/unknown protein [Ralstonia solanacearum IPO1609]
 gb|EAP72476.1| hypothetical protein RRSL_02556 [Ralstonia solanacearum UW551]
 emb|CAQ60381.1| hypothetical/unknown protein [Ralstonia solanacearum IPO1609]
          Length = 127

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/76 (56%), Positives = 48/76 (63%)

Query: 65  RDQVAVDTTRLAPSNSYSTPDFVLRGTYRPEPFVCKDCGVAEVWTPLQQKWWYETAKGDV 124
           R  V VD   LAPSNSY  P FV RG Y    F+C DC   EVWT  QQKWWYE AKG V
Sbjct: 38  RGSVLVDKWLLAPSNSYGEPAFVRRGYYVDVHFICSDCESREVWTAAQQKWWYEVAKGYV 97

Query: 125 FTAAVRCRACRTRERA 140
           ++ A RC ACR + R+
Sbjct: 98  YSTAARCLACRRQRRS 113


>ref|YP_435695.1| hypothetical protein HCH_10017 [Hahella chejuensis KCTC 2396]
 gb|ABC31270.1| conserved hypothetical protein [Hahella chejuensis KCTC 2396]
          Length = 125

 Score = 89.7 bits (221), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 41/73 (56%), Positives = 50/73 (68%), Gaps = 5/73 (6%)

Query: 84  PDFVLRGTYRPEPFVCKDCGVAEVWTPLQQKWWYETAKGDVFTAAVRCRACRTRERARKS 143
           P+F     Y    F+CKDC   E+WT  QQKWWYE A+G + + AVRCR+CR +E+ RK 
Sbjct: 55  PNF-----YIDRHFICKDCESHEIWTAKQQKWWYEIARGSIASKAVRCRSCRYKEKRRKE 109

Query: 144 AVRRVHLEGLARK 156
             RRVHLEGLARK
Sbjct: 110 EARRVHLEGLARK 122