BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0030.p         (132 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001239828.1| hypothetical protein BBta_3846 [Bradyrhizobi...   157   6e-37
ref|YP_001205364.1| hypothetical protein BRADO3339 [Bradyrhizobi...   145   3e-33
ref|YP_004676527.1| hypothetical protein HYPMC_2742 [Hyphomicrob...   122   1e-26
ref|YP_001418737.1| hypothetical protein Xaut_3856 [Xanthobacter...    76   1e-12
ref|NP_001130074.1| hypothetical protein LOC100191167 [Zea mays]...    40   0.12 

>ref|YP_001239828.1| hypothetical protein BBta_3846 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35922.1| hypothetical protein BBta_3846 [Bradyrhizobium sp. BTAi1]
          Length = 126

 Score =  157 bits (396), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 94/126 (74%)

Query: 7   MQIETQELTTCEVASDGCAISLGFVDGKGEPATIRLSINQVGALVMTLPGLISKALQTRF 66
           MQ+  + LT CEV  DG  ISLGF D  G+P  + LS++Q GAL+MTLPGL+  AL+ R+
Sbjct: 1   MQLRAKALTCCEVVDDGETISLGFEDAAGQPIALSLSVSQAGALIMTLPGLLEMALRARY 60

Query: 67  GDQTLRYAYPLDSWVIEQSTDPAQGMMTLKTSDGFSVCFSIPRAQQSELGEALVAQPVTR 126
           GDQ LRYAYPL SW IEQSTD AQ +MTL T+DGFSV F+IP A+Q+ LGEAL+AQ  T 
Sbjct: 61  GDQALRYAYPLASWTIEQSTDAAQRIMTLATADGFSVRFAIPTAEQNVLGEALLAQYPTL 120

Query: 127 VQMRAN 132
           + +R N
Sbjct: 121 MAVRPN 126


>ref|YP_001205364.1| hypothetical protein BRADO3339 [Bradyrhizobium sp. ORS 278]
 emb|CAL77133.1| hypothetical protein BRADO3339 [Bradyrhizobium sp. ORS 278]
          Length = 126

 Score =  145 bits (365), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 72/124 (58%), Positives = 88/124 (70%), Gaps = 1/124 (0%)

Query: 7   MQIETQELTTCEVASDGCAISLGFVDGKGEPATIRLSINQVGALVMTLPGLISKALQTRF 66
           M++  + LT CEV   G  ISLGF D  G    + LS+NQ GALVMTLPGL+  AL+TR+
Sbjct: 1   MELRAKALTICEVVDQGETISLGFEDAAGRQGVLNLSVNQAGALVMTLPGLLELALRTRY 60

Query: 67  GDQTLRYAYPLDSWVIEQSTDPAQGMMTLKTSDGFSVCFSIPRAQQSELGEALVA-QPVT 125
           GDQ LRYAYPL SW IEQSTD  Q ++TL TSDGFSV F+IP+ +Q+ LGEAL+   P  
Sbjct: 61  GDQALRYAYPLASWTIEQSTDATQRIITLATSDGFSVRFAIPKDEQNVLGEALLKPYPEV 120

Query: 126 RVQM 129
           RV +
Sbjct: 121 RVPL 124


>ref|YP_004676527.1| hypothetical protein HYPMC_2742 [Hyphomicrobium sp. MC1]
 emb|CCB65959.1| conserved protein of unknown function [Hyphomicrobium sp. MC1]
          Length = 126

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 80/113 (70%)

Query: 7   MQIETQELTTCEVASDGCAISLGFVDGKGEPATIRLSINQVGALVMTLPGLISKALQTRF 66
           M+I+ Q+LT   V +DG +++L  VD KG PA + L + Q+G L M+LP LI  A+Q ++
Sbjct: 1   MRIDVQDLTQFNVETDGRSVTLHVVDTKGMPAAVNLQVAQLGMLAMSLPNLIDAAIQVQY 60

Query: 67  GDQTLRYAYPLDSWVIEQSTDPAQGMMTLKTSDGFSVCFSIPRAQQSELGEAL 119
           GD + R+ YPL SW++EQ+ DP+  ++TLKTSDGF V FS+PR +  E+ E+L
Sbjct: 61  GDASCRFTYPLASWLVEQALDPSLLIVTLKTSDGFGVSFSLPRKKADEMSESL 113


>ref|YP_001418737.1| hypothetical protein Xaut_3856 [Xanthobacter autotrophicus Py2]
 gb|ABS69080.1| conserved hypothetical protein [Xanthobacter autotrophicus Py2]
          Length = 134

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 41/122 (33%), Positives = 65/122 (53%), Gaps = 15/122 (12%)

Query: 12  QELTTCEVASDGCAISLGFVDGKGEPATIRLSINQVGALVMTLPGLISKALQTRFGDQTL 71
           ++L   +VA DG  I + F    G    + L  + + A+VMTLP ++++ L+ R  D +L
Sbjct: 9   EDLLAFDVAVDGSRIRMSFSRPDGSATALNLPSDCLNAMVMTLPKMMTEVLRARHKDDSL 68

Query: 72  RYAYPLDSWVIEQSTDPAQGMMTLKTSDGFSVCF---------------SIPRAQQSELG 116
           R  YP     IEQ++DP   ++TL T DGF V F               ++PRAQ+++ G
Sbjct: 69  RLVYPAHMVRIEQASDPQTLILTLATPDGFEVSFALAGPQLKSLVAAEAALPRAQEAQAG 128

Query: 117 EA 118
           +A
Sbjct: 129 KA 130


>ref|NP_001130074.1| hypothetical protein LOC100191167 [Zea mays]
 gb|ACF78196.1| unknown [Zea mays]
 gb|ACG43016.1| protein phosphatase 2C isoform epsilon [Zea mays]
 gb|ACR33835.1| unknown [Zea mays]
          Length = 290

 Score = 40.0 bits (92), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 36  EPATIRLSINQVGALVMTLPGLISK-----ALQTRFGDQTLRYAYPLDSWVIEQSTDPAQ 90
           EP   R +I Q G  V  LPG + +     A+   FGD++L+     D +V+EQ+ D   
Sbjct: 173 EPNMERQTIEQKGGFVSNLPGDVPRVDGQLAVARAFGDRSLKKHLSSDPYVVEQTIDENT 232

Query: 91  GMMTLKTSDGF 101
             + L  SDG 
Sbjct: 233 EFLIL-ASDGL 242