BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0024.p (393 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001237757.1| hypothetical protein BBta_1640 [Bradyrhizobi... 445 e-123 ref|YP_001208019.1| hypothetical protein BRADO6154 [Bradyrhizobi... 444 e-123 ref|ZP_05063722.1| hypothetical membrane spanning protein [Octad... 147 3e-33 ref|ZP_07659028.1| putative membrane protein [Roseibium sp. Tric... 143 4e-32 ref|ZP_01751202.1| hypothetical protein RCCS2_16316 [Roseobacter... 141 1e-31 >ref|YP_001237757.1| hypothetical protein BBta_1640 [Bradyrhizobium sp. BTAi1] gb|ABQ33851.1| putative membrane protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 398 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 251/395 (63%), Positives = 306/395 (77%), Gaps = 6/395 (1%) Query: 5 VIADSIVNLCGAIGLAVAMMTFYRRDPRSPLTRRLLLALGVIAILFLDRGLAWWTGSRLL 64 V+ADS+VNLCGAIGLAVA + +RRDPR P T RL+ L ++A LFL RG+AWWT + L Sbjct: 4 VVADSVVNLCGAIGLAVAAVMLHRRDPRGPQTARLVALLALVASLFLLRGIAWWTDNSTL 63 Query: 65 DRLSVIPASLVPLGALIVTEGILRRHAPRAVKMAALAGAILLGLGGLFGLQRLAMPYAIA 124 DR+S+IPA+L+PLGALIVTEG+LRRHA R +K+AAL G +L L G G L + Sbjct: 64 DRISLIPAALIPLGALIVTEGLLRRHAHRRLKVAALVGGGVLALAGALGPVELENVHTAM 123 Query: 125 LALFQLLGFATCALLLATRDRAALMAAENRSIGRMAVGALVVIPFILTDFRTLFPDIPVR 184 L+ FQL GFA CA+LL R RA L+A ENR+I R+A GA++VIPFI+TDFR L PD+PVR Sbjct: 124 LSAFQLAGFAVCAVLLIGRGRADLLAWENRAIDRVAFGAVLVIPFIITDFRVLAPDMPVR 183 Query: 185 LGALGALLTVTVMLIAGGGAXA------MMALRLISSGLLGLAAAFMAPDVDAAQMVRFV 238 LGALGALL VT +LIAG + LR++ + LLG AAA ++ DVDAAQ++R Sbjct: 184 LGALGALLAVTAILIAGANDETQRQGVLLTVLRIVGAALLGAAAAALSADVDAAQLMRHC 243 Query: 239 AVAIAGVLTIGLMTDALRALFESQEPGVLNSVAASPAQTREQLIAELARHPIFESARRFR 298 AVA+AGVL IGLM DALRA+ E+++PGVL+S+ AS A TR+ LI ELAR PIFESARR+R Sbjct: 244 AVAVAGVLAIGLMGDALRAVLEARQPGVLDSIGASAATTRDALIVELARQPIFESARRYR 303 Query: 299 ENELALYDPPLLHDFLSTRRVLRRSDAPWGLAPTDPAAERMVSLISANNASHVIVLGHDP 358 E +LA YDPPLL DFL+ RRVLRR+DAPWGLA TDPA ERMV+L++A +A+HVIVL HDP Sbjct: 304 EADLAAYDPPLLRDFLAARRVLRRADAPWGLAATDPAVERMVALMTARHATHVIVLSHDP 363 Query: 359 LDLIVLAVPVTAADPATETALALVRRLLALTPEAK 393 +DLIVLAV V +ADPATETALALVRRLL PEA Sbjct: 364 VDLIVLAVSVISADPATETALALVRRLLVQAPEAS 398 >ref|YP_001208019.1| hypothetical protein BRADO6154 [Bradyrhizobium sp. ORS 278] emb|CAL79804.1| hypothetical protein; putative membrane protein [Bradyrhizobium sp. ORS 278] Length = 398 Score = 444 bits (1143), Expect = e-123, Method: Compositional matrix adjust. Identities = 252/393 (64%), Positives = 307/393 (78%), Gaps = 6/393 (1%) Query: 5 VIADSIVNLCGAIGLAVAMMTFYRRDPRSPLTRRLLLALGVIAILFLDRGLAWWTGSRLL 64 VIADS+VNLCGAIGLAVA +RRDPR LT RL+ LG++A+LFL RG+AWW+ + L Sbjct: 4 VIADSVVNLCGAIGLAVAAAMLHRRDPRGALTARLVALLGLVAVLFLLRGIAWWSDNATL 63 Query: 65 DRLSVIPASLVPLGALIVTEGILRRHAPRAVKMAALAGAILLGLGGLFGLQRLAMPYAIA 124 DR+S+IPA+L+PLGAL VTEG+LRRHA R +K+AAL G L G G L + Sbjct: 64 DRISLIPAALIPLGALAVTEGLLRRHARRGLKLAALLGGAALAAAGALGPVELETHHTAV 123 Query: 125 LALFQLLGFATCALLLATRDRAALMAAENRSIGRMAVGALVVIPFILTDFRTLFPDIPVR 184 L+ FQL GFA CALLL RD+A+L+A ENR+I R+A+GAL+VIPFI+TDFR L PD+PVR Sbjct: 124 LSAFQLAGFAICALLLLRRDQASLLAWENRAIDRVALGALIVIPFIITDFRVLAPDMPVR 183 Query: 185 LGALGALLTVTVMLIAGGGAXA------MMALRLISSGLLGLAAAFMAPDVDAAQMVRFV 238 LGALGALL VT +LIAG + A + LR+ + +LG AAA ++PDVDAAQ+ RF Sbjct: 184 LGALGALLAVTAILIAGTSSEAQRQGVWLTVLRIAGAAVLGAAAAALSPDVDAAQLSRFC 243 Query: 239 AVAIAGVLTIGLMTDALRALFESQEPGVLNSVAASPAQTREQLIAELARHPIFESARRFR 298 AVA+AGVLTIGL+ DALRA+ E++EPGVL+S+ AS A TR++LIAEL R PIFESARR+R Sbjct: 244 AVAMAGVLTIGLLGDALRAVLEAREPGVLDSIGASGAATRDELIAELTRQPIFESARRYR 303 Query: 299 ENELALYDPPLLHDFLSTRRVLRRSDAPWGLAPTDPAAERMVSLISANNASHVIVLGHDP 358 E+ LA +DPPLL DFL+ RRVLRR+DAPWG A TDPA ERMV+L+ A +A+HVIVL H P Sbjct: 304 EDSLAAFDPPLLRDFLAARRVLRRADAPWGRAATDPAVERMVALMDARHATHVIVLSHQP 363 Query: 359 LDLIVLAVPVTAADPATETALALVRRLLALTPE 391 +DLIVLAV V AADPATETALALVRRLL PE Sbjct: 364 VDLIVLAVSVIAADPATETALALVRRLLVQAPE 396 >ref|ZP_05063722.1| hypothetical membrane spanning protein [Octadecabacter antarcticus 238] gb|EDY88961.1| hypothetical membrane spanning protein [Octadecabacter antarcticus 238] Length = 398 Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 112/386 (29%), Positives = 191/386 (49%), Gaps = 12/386 (3%) Query: 7 ADSIVNLCGAIGLAVAMMTFYRRDPRSPLTRRLLLALGVIAILFLDRGLAWWTGSRLLDR 66 A+ ++L G+ + RDP +PL RR LL L VIA+LF R L TG Sbjct: 9 ANLFLSLAALAGVLILQSVICARDPWAPLNRRFLLGLRVIAMLFAGRALLILTGLDFFCF 68 Query: 67 LSVIPASLVPLGALIVTEGILRRHAPRAVKMAALAGAILLGLGGLFGLQRLAMPYAIALA 126 ++ +L+P+ L++ EG+LRRHA R VK+ + G I+ + + + P I L Sbjct: 69 FILLGVTLIPVSVLLLAEGLLRRHATRWVKVWVMCGTIVFSILSFWWSDSIDPPRLIGLL 128 Query: 127 LFQLLGFATCALLLATRDRAALMAAENRSIGRMAVGALVVIPFILTDFRTLFPDIPVRLG 186 FQ+ GF A ++ +R++++L AEN++ R+++ +++P +DF + D+P + Sbjct: 129 TFQVSGFFIGAWMVLSREKSSLTVAENQTAERLSLSLFLLVPLAASDFFMVSLDLPAQTS 188 Query: 187 ALGALLTVTVMLIAGGGAXAMMALRLIS-------SGLLGLAAAFMAPDVDAAQMVRFVA 239 LG L + + ++ G + A L+S +GL G A M D+D + +A Sbjct: 189 PLGVLF-LCWLAVSLGRSQAQHRAPLVSFLAIVLAAGLSGFVVADMV-DMDKDATILTLA 246 Query: 240 VAIAGVLTIGLMTDALRALFESQEPGVLNSVAASPAQTREQLIAELARHPIFESARRFRE 299 V +A V+ L +A E Q +L +A ++ + L HP+ + A Sbjct: 247 VILAAVMVAVLFIEAKALRSEEQSQTLLRHLAEDRSRDTLGFLRGLQAHPMVDGAALIDV 306 Query: 300 NELALYDPPLLHDFLSTRRVLRRSDAPWGLAPTDPAAERMVSLISANNASHVIVLGHDPL 359 +LA +DP +L + R VLRR+D P A+ + L +ASH+++ P+ Sbjct: 307 PQLADFDPAVLRHIFTVRPVLRRADPP---LIDGAQADHISHLFRLFDASHILLADDAPM 363 Query: 360 DLIVLAVPVTAADPATETALALVRRL 385 L+ L++P A P E LA+V+R+ Sbjct: 364 TLVALSMPSLATSPRAELELAVVQRM 389 >ref|ZP_07659028.1| putative membrane protein [Roseibium sp. TrichSKD4] gb|EFO32531.1| putative membrane protein [Roseibium sp. TrichSKD4] Length = 400 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 112/397 (28%), Positives = 192/397 (48%), Gaps = 10/397 (2%) Query: 1 MTSGVIADSIVNLCGAIGLAVAMMTFYRRDPRSPLTRRLLLALGVIAILFLDRGLAWWTG 60 M + ++ADS V++ GL + + + + + RR + V+ L R L W T Sbjct: 2 MPATLVADSFVSVAAIAGLLILYFSMRKAERAEWINRRFGFVIQVLICLMATRVLYWVTD 61 Query: 61 SRLLDRLSVIPASLVPLGALIVTEGILRRHAPRAVKMAALAGAILLGLGGLFGLQRLAMP 120 S L L++ A LVPL L+++EG++RRHAP K+ A AGA++ LG F L Sbjct: 62 SSLFRILNMASAGLVPLSMLMLSEGLMRRHAPLVFKIFATAGAVVFVLGAPFEALYLNSS 121 Query: 121 YAIALALFQLLGFATCALLLATRDRAALMAAENRSIGRMAVGALVVIPFILTDFRTLFPD 180 I L +FQ++ F + RDR+ L A ENR I R++ L++IPF ++DFR D Sbjct: 122 IMIGLLVFQVVSFIAIGAWVVIRDRSELEAGENRIIDRLSWALLLIIPFAISDFRIGILD 181 Query: 181 IPVRLGALGAL------LTVTVMLIAGGGAXAMMALRLISSGLLGLAAAFMAPDVDAAQM 234 PVRL + L L++ + + M L ++ SG + +A + +D QM Sbjct: 182 FPVRLSGVAILFLCWLSLSLNRVRVHHIQIVYSMLLFVVGSG-VAIATIGVIAGLDWPQM 240 Query: 235 VRFVAVAIAGVLTIGLMTDALRALFESQEPGVLNSVAASPAQTREQLIAELARHPIFESA 294 ++ A+ ++ L + + +A + + + ++ +A + + L H + Sbjct: 241 LQSGAIILSTGLLLQVRAEAKAHVEDDERSSLMRYMARHDGADVKLFLQGLQEHRLVAHP 300 Query: 295 RRFRENELALYDPPLLHDFLSTRRVLRRSDAPWGLAPTDPAAERMVSLISANNASHVIVL 354 E +L +D L D L +++ S + G AE++ L+ NA+H I Sbjct: 301 LLLEEGDLGDFDAS-LRDHLRRTKIVTASRSMNG--ADGSVAEQVNWLLGKYNATHAIFA 357 Query: 355 GHDPLDLIVLAVPVTAADPATETALALVRRLLALTPE 391 G+ P L+VL +P +P T+ L++V+RLL L + Sbjct: 358 GNTPFRLVVLNLPSLTGEPDTDVELSVVQRLLELMSK 394 >ref|ZP_01751202.1| hypothetical protein RCCS2_16316 [Roseobacter sp. CCS2] gb|EBA11510.1| hypothetical protein RCCS2_16316 [Roseobacter sp. CCS2] Length = 399 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 116/382 (30%), Positives = 181/382 (47%), Gaps = 11/382 (2%) Query: 14 CGA-IGLAVAMMTFYRRDPRSPLTRRLLLALGVIAILFLDRGLAWWTGSRLLDRLSVIPA 72 C A IGL V RRDP P+ RR L + + +LF R L TG L + A Sbjct: 8 CAALIGLFVLQTVLDRRDPWEPINRRFLFGVRITMVLFAGRVLMILTGIEAFRILILFAA 67 Query: 73 SLVPLGALIVTEGILRRHAPRAVKMAALAGAILLGLGGLFGLQRLAMPYAIALALFQLLG 132 +++PL LI+TEG+LRRHAP VK GA+ + L+ + + AL FQLLG Sbjct: 68 AVIPLAVLILTEGLLRRHAPPLVKTVIGGGAVAFAISSLWYSESIDPTRLFALLGFQLLG 127 Query: 133 FATCALLLATRDRAALMAAENRSIGRMAVGALVVIPFILTDFRTLFPDIPVRLGALGALL 192 F L+ RD+A+L EN + R+ + ++ IP DF L+ +P++ ALG L+ Sbjct: 128 FILSGWLIVMRDKASLSINENAMVVRLGLSLILFIPLAAGDFLLLYIGLPIQFSALGVLI 187 Query: 193 TVTVMLIAGGGAXAMMALRLISSGLLGLAAAFMAPDVDA-AQMVR-----FVAVAIAGVL 246 + + G A L++ G++ AA + + AQ+ R +A + + Sbjct: 188 LCWLAIGLGRTHLGHRA-TLVNLGVMVGAALIVGGMIGTFAQLGRDGYLLTIAAIMTTLF 246 Query: 247 TIGLMTDALRALFESQEPGVLNSVAASPAQTREQLIAELARHPIFESARRFRENELALYD 306 + ++ DA E Q G+LN +A + + +L HP+ E A E+ L Sbjct: 247 VVAILNDARALRLEEQSLGLLNQLATARTDDPMTFLRDLQNHPLVEGAVVVSEDSLHGLQ 306 Query: 307 PPLLHDFLSTRRVLRRSDAPWGLAPTDPAAERMVSLISANNASHVIVLGHDPLDLIVLAV 366 +L VLRR+D P A D + + L +A+HV++ P L+ LA+ Sbjct: 307 DDVLDKIFCAAPVLRRTDPPQLGAVAD---DYITYLFERYSATHVMLAMSRPRVLVALAM 363 Query: 367 PVTAADPATETALALVRRLLAL 388 P + P+ E L +V+R+ AL Sbjct: 364 PSLSTSPSAELELQVVQRMAAL 385