BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0022.p (345 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001208020.1| hypothetical protein BRADO6155 [Bradyrhizobi... 436 e-120 ref|YP_001237756.1| hypothetical protein BBta_1639 [Bradyrhizobi... 401 e-110 ref|YP_004685669.1| hypothetical protein CNE_1c18480 [Cupriavidu... 329 4e-88 ref|YP_726338.1| hypothetical protein H16_A1869 [Ralstonia eutro... 328 1e-87 ref|ZP_07659026.1| conserved hypothetical protein [Roseibium sp.... 323 4e-86 >ref|YP_001208020.1| hypothetical protein BRADO6155 [Bradyrhizobium sp. ORS 278] emb|CAL79805.1| hypothetical protein BRADO6155 [Bradyrhizobium sp. ORS 278] Length = 334 Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust. Identities = 217/304 (71%), Positives = 246/304 (80%) Query: 26 AAFDGLRSHGGFWLKALSQPTIDLSLRTQAGQRTRIVESPGLSLPRDELDALVEQLRIVA 85 AA + H GFWL+AL Q +DLSLRT A RTRIVESPG +L L ALV LR VA Sbjct: 5 AAAKRITGHVGFWLRALGQEAMDLSLRTHADLRTRIVESPGTTLDDTALAALVADLRAVA 64 Query: 86 AKTLPEESLTYGIFSGEPERLSRAVVTLISEEDTGRPIAFNALSVMDVPLDGEPAEVTHL 145 TLP LTYGIFSG+ E L+RA++TL+S+ TGRPIAFNAL+VM V DGE +V HL Sbjct: 65 GNTLPAGDLTYGIFSGQREALARAIITLVSDATTGRPIAFNALAVMQVARDGETQQVIHL 124 Query: 146 GLVMVDPDVRGQGLSWVLYGLTALVLFARDGLRPKWISNVTQVPAVVGMVSDTFSDVFPS 205 GLVMVDPD RG+GLS VLYGLT L+LF RDGLRPKWISNVTQVPAV GMV +TFSDV+PS Sbjct: 125 GLVMVDPDARGKGLSGVLYGLTTLLLFIRDGLRPKWISNVTQVPAVAGMVCETFSDVYPS 184 Query: 206 PLPGARQSFAHLQLARGIMARHRAVFGVGEEAGFDEARSVITNAYTGGSDALKKTFEIAP 265 P P ARQSF HLQLARGIM HRAVFGVG+EAGFDE R VITNAYTGGSDALKK F+ AP Sbjct: 185 PQPEARQSFTHLQLARGIMRAHRAVFGVGDEAGFDETRFVITNAYTGGSDALKKRFDEAP 244 Query: 266 KHRNAVYNEFCARELDYTRGDDVLQIGRIDLAGARRYIMSEVPSGSLPSLLAASAMLALQ 325 KHR+ +YN FCARELDY RGDD+LQ+GRID+A ARRY++ E+PSGSLP+LLA SA+LALQ Sbjct: 245 KHRDDIYNGFCARELDYDRGDDLLQLGRIDMAAARRYLLREIPSGSLPALLATSAVLALQ 304 Query: 326 RXLL 329 R +L Sbjct: 305 RMIL 308 >ref|YP_001237756.1| hypothetical protein BBta_1639 [Bradyrhizobium sp. BTAi1] gb|ABQ33850.1| hypothetical protein BBta_1639 [Bradyrhizobium sp. BTAi1] Length = 334 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 216/299 (72%), Positives = 248/299 (82%) Query: 31 LRSHGGFWLKALSQPTIDLSLRTQAGQRTRIVESPGLSLPRDELDALVEQLRIVAAKTLP 90 +R + GFW+ AL Q +DLSLRT A RTRIVESPG +L L ALV LRIVA KTLP Sbjct: 10 IRRNIGFWVTALGQEAMDLSLRTHADLRTRIVESPGTTLDDAALAALVADLRIVAGKTLP 69 Query: 91 EESLTYGIFSGEPERLSRAVVTLISEEDTGRPIAFNALSVMDVPLDGEPAEVTHLGLVMV 150 LTYG+FSG E L+R++VTL+S+ +G+PIAFNAL+VM V DG+ EV HLGLVMV Sbjct: 70 AGDLTYGLFSGRREALARSIVTLVSDATSGQPIAFNALAVMQVARDGDTQEVIHLGLVMV 129 Query: 151 DPDVRGQGLSWVLYGLTALVLFARDGLRPKWISNVTQVPAVVGMVSDTFSDVFPSPLPGA 210 DP RG+GLS VLYGLT L+LF RDGLRPKWISNVTQVPAV GMV +TFSDV+PSPLP A Sbjct: 130 DPQARGKGLSGVLYGLTTLLLFIRDGLRPKWISNVTQVPAVAGMVCETFSDVYPSPLPQA 189 Query: 211 RQSFAHLQLARGIMARHRAVFGVGEEAGFDEARSVITNAYTGGSDALKKTFEIAPKHRNA 270 RQSFAHLQLARGIM HRAVFGVGE+AGFDE R VITNAYTGGSDALKKTF+ APKHR+ Sbjct: 190 RQSFAHLQLARGIMRAHRAVFGVGEDAGFDETRFVITNAYTGGSDALKKTFDDAPKHRDD 249 Query: 271 VYNEFCARELDYTRGDDVLQIGRIDLAGARRYIMSEVPSGSLPSLLAASAMLALQRXLL 329 +YN +CARELDY RGDD+LQ+GRIDLA ARRY++ E+PSGSLP+LLAASA+LALQR +L Sbjct: 250 LYNGYCARELDYARGDDLLQLGRIDLAAARRYLLREIPSGSLPALLAASAVLALQRMIL 308 >ref|YP_004685669.1| hypothetical protein CNE_1c18480 [Cupriavidus necator N-1] gb|AEI77188.1| hypothetical membrane protein [Cupriavidus necator N-1] Length = 317 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 161/283 (56%), Positives = 207/283 (73%), Gaps = 1/283 (0%) Query: 47 IDLSLRTQAGQRTRIVESPGLSLPRDELDALVEQLRIVAAKTLPEESLTYGIFSGEPERL 106 +DLSL+ R R+VE PGL + +L+A++ ++R + + + ++ L YG+ SG+PERL Sbjct: 15 LDLSLKASRSVRIRVVERPGLWMDAQQLEAMLAEMRGIVQRGIGKD-LDYGVLSGDPERL 73 Query: 107 SRAVVTLISEEDTGRPIAFNALSVMDVPLDGEPAEVTHLGLVMVDPDVRGQGLSWVLYGL 166 RAV+TL+ + D+G+ IAFNALSVM + + G PAE HLGLVMVDP R QGLSWVLYGL Sbjct: 74 RRAVITLLYDRDSGQAIAFNALSVMPIEIKGRPAEAIHLGLVMVDPGYRTQGLSWVLYGL 133 Query: 167 TALVLFARDGLRPKWISNVTQVPAVVGMVSDTFSDVFPSPLPGARQSFAHLQLARGIMAR 226 T ++LF R GLRP WISNVTQVPA++G V++ F +P+P +R+SF HL +AR IM Sbjct: 134 TCILLFFRRGLRPIWISNVTQVPAIIGKVAEVFVTAYPNPFEPSRRSFEHLSVAREIMKS 193 Query: 227 HRAVFGVGEEAGFDEARSVITNAYTGGSDALKKTFEIAPKHRNAVYNEFCARELDYTRGD 286 HR VFGV AGFDEAR VIT+AYTGGSD LKKTF+ APKHR+ NE C RELDY RGD Sbjct: 194 HRHVFGVDGAAGFDEARFVITDAYTGGSDNLKKTFDQAPKHRDERANELCQRELDYQRGD 253 Query: 287 DVLQIGRIDLAGARRYIMSEVPSGSLPSLLAASAMLALQRXLL 329 D LQI +DLA AR+Y++ EVP SLP++L A LA+ R +L Sbjct: 254 DFLQIACLDLASARKYLLREVPRDSLPAILYQIAFLAVGRIVL 296 >ref|YP_726338.1| hypothetical protein H16_A1869 [Ralstonia eutropha H16] emb|CAJ92970.1| hypothetical membrane spanning protein [Ralstonia eutropha H16] Length = 317 Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 160/283 (56%), Positives = 206/283 (72%), Gaps = 1/283 (0%) Query: 47 IDLSLRTQAGQRTRIVESPGLSLPRDELDALVEQLRIVAAKTLPEESLTYGIFSGEPERL 106 +DLSL+ R R+VE PGL + +L+A++ ++R + + + ++ L YG+ SG+PERL Sbjct: 15 LDLSLKASRSVRIRVVERPGLWMDARQLEAMLAEMRGIVQRGIGKD-LDYGVLSGDPERL 73 Query: 107 SRAVVTLISEEDTGRPIAFNALSVMDVPLDGEPAEVTHLGLVMVDPDVRGQGLSWVLYGL 166 RAV+TL+ + D+G+PIAFNALSVM + + P E HLGLVMVDP R QGLSWVLYGL Sbjct: 74 RRAVITLLYDRDSGQPIAFNALSVMPIEVKARPVEAIHLGLVMVDPGYRTQGLSWVLYGL 133 Query: 167 TALVLFARDGLRPKWISNVTQVPAVVGMVSDTFSDVFPSPLPGARQSFAHLQLARGIMAR 226 T ++LF R GLRP WISNVTQVPA++G V++ F +P+P +R+SF HL +AR IM Sbjct: 134 TCILLFFRRGLRPIWISNVTQVPAIIGKVAEVFVTAYPNPFEPSRRSFEHLSVAREIMKS 193 Query: 227 HRAVFGVGEEAGFDEARSVITNAYTGGSDALKKTFEIAPKHRNAVYNEFCARELDYTRGD 286 HR VFGV AGFDEAR VIT+AYTGGSD LKKTFE APKHR+ NE C RELDY RGD Sbjct: 194 HRHVFGVDGAAGFDEARFVITDAYTGGSDNLKKTFEQAPKHRDERANELCRRELDYQRGD 253 Query: 287 DVLQIGRIDLAGARRYIMSEVPSGSLPSLLAASAMLALQRXLL 329 D LQ+ +DLA AR+Y++ EVP SLP++L A LA+ R +L Sbjct: 254 DFLQVACLDLASARKYLLREVPRDSLPAILYQIAFLAVGRIVL 296 >ref|ZP_07659026.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] gb|EFO32529.1| conserved hypothetical protein [Roseibium sp. TrichSKD4] Length = 316 Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 163/290 (56%), Positives = 203/290 (70%) Query: 40 KALSQPTIDLSLRTQAGQRTRIVESPGLSLPRDELDALVEQLRIVAAKTLPEESLTYGIF 99 K S+ +DL L+T TRIVE PG + +DEL L E L +A+KTL SLTYG+F Sbjct: 7 KTFSKDHLDLVLQTSEDHETRIVEFPGRWMTQDELQELREALISIASKTLARGSLTYGVF 66 Query: 100 SGEPERLSRAVVTLISEEDTGRPIAFNALSVMDVPLDGEPAEVTHLGLVMVDPDVRGQGL 159 + L V+TLI + +G+PIAFNAL+VM+V A V HLGLVMVDP R +GL Sbjct: 67 KADGSGLRDTVITLIRDRYSGQPIAFNALAVMEVAHGSATATVLHLGLVMVDPGQRSRGL 126 Query: 160 SWVLYGLTALVLFARDGLRPKWISNVTQVPAVVGMVSDTFSDVFPSPLPGARQSFAHLQL 219 SWVLYGLT L+ F R+ LRP WISNVTQVPA+VGMV++TFS V+P P +R+S HL L Sbjct: 127 SWVLYGLTCLLFFLRNQLRPFWISNVTQVPAIVGMVAETFSAVYPQPDDRSRRSIEHLLL 186 Query: 220 ARGIMARHRAVFGVGEEAGFDEARSVITNAYTGGSDALKKTFEIAPKHRNAVYNEFCARE 279 AR IMA HR VFGVG EA FDEA VI NAYTGGSD LKK+F++A KHR+ YN FC Sbjct: 187 AREIMANHRHVFGVGAEAEFDEACFVIGNAYTGGSDDLKKSFDVAQKHRDEKYNSFCKDS 246 Query: 280 LDYTRGDDVLQIGRIDLAGARRYIMSEVPSGSLPSLLAASAMLALQRXLL 329 LDY RGDD LQIGR+D+ ++ Y+M VP S+ +++AA+ ++LQR LL Sbjct: 247 LDYERGDDFLQIGRMDIFASKDYLMKSVPRRSVLAIVAAAFFISLQRVLL 296