BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0018.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_773169.1| hypothetical protein bll6529 [Bradyrhizobium ja...   201   3e-50
ref|YP_003607440.1| cupin [Burkholderia sp. CCGE1002] >gi|295438...   176   1e-42
ref|YP_001631613.1| hypothetical protein Bpet3003 [Bordetella pe...    67   6e-10
ref|YP_607295.1| hypothetical protein PSEEN1633 [Pseudomonas ent...    65   3e-09
ref|YP_728442.1| hypothetical protein H16_B0276 [Ralstonia eutro...    60   8e-08

>ref|NP_773169.1| hypothetical protein bll6529 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51794.1| bll6529 [Bradyrhizobium japonicum USDA 110]
          Length = 162

 Score =  201 bits (511), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 95/123 (77%), Positives = 107/123 (86%)

Query: 1   MVESSDGQAKAQQAGFAGVTRRTLERLALPGDDRELVVAEVTYPPGGVAPLHRHPVGGVV 60
           M E +D QA AQQAGFAGVTR+ LERL LPG+ +EL+V EVTYPPGGVAPLHRHPV G +
Sbjct: 40  MDERTDAQASAQQAGFAGVTRKVLERLPLPGNQQELMVVEVTYPPGGVAPLHRHPVAGAI 99

Query: 61  FIVEGVAESAYGDEAPRQYRAGETLQDRPGVPHTLFRNCDPDRPLRFLTIYALEPGRAYT 120
           +IVEGVAESAYG + PRQYRAGETLQDR  +PHTLFRNCDP+RPL FLTIY LEPGR+YT
Sbjct: 100 YIVEGVAESAYGGDEPRQYRAGETLQDRADLPHTLFRNCDPERPLCFLTIYVLEPGRSYT 159

Query: 121 MEP 123
           +EP
Sbjct: 160 LEP 162


>ref|YP_003607440.1| cupin [Burkholderia sp. CCGE1002]
 gb|ADG17929.1| Cupin 2 conserved barrel domain protein [Burkholderia sp. CCGE1002]
          Length = 123

 Score =  176 bits (445), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 83/122 (68%), Positives = 99/122 (81%)

Query: 1   MVESSDGQAKAQQAGFAGVTRRTLERLALPGDDRELVVAEVTYPPGGVAPLHRHPVGGVV 60
           M E+ D  A    +GF GVTRR LER+ +PG  RELV+ EVTYPPGGVAPLH HPVGG+V
Sbjct: 1   MTEAIDPAADTGASGFQGVTRRVLERMPMPGSSRELVLTEVTYPPGGVAPLHAHPVGGIV 60

Query: 61  FIVEGVAESAYGDEAPRQYRAGETLQDRPGVPHTLFRNCDPDRPLRFLTIYALEPGRAYT 120
           +I+EGVAESAYG +APR+Y AG +LQDR  VPHTLFRNC+ +RPLRFLTI ALEPG++Y 
Sbjct: 61  YILEGVAESAYGSDAPRRYSAGASLQDRTDVPHTLFRNCESERPLRFLTICALEPGQSYV 120

Query: 121 ME 122
           +E
Sbjct: 121 IE 122


>ref|YP_001631613.1| hypothetical protein Bpet3003 [Bordetella petrii DSM 12804]
 emb|CAP43345.1| hypothetical protein Bpet3003 [Bordetella petrii]
          Length = 139

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 34  RELVVAEVTYPPGGVAPLHRHPVGGVVF--IVEGVAESAYGDEAPRQYRAGETLQDRPGV 91
           + LVV EV Y PG  +P HRH     ++  ++ G  ES   D A R Y+AGE+  + PG 
Sbjct: 46  KSLVVVEVEYAPGAASPSHRHAQSAFIYAYVLAGAIESKVNDGAIRVYQAGESWSEPPGA 105

Query: 92  PHTLFRNCDPDRPLRFLTIYALE 114
            H++ RN    +P + L ++A++
Sbjct: 106 THSVSRNASKTKPAKLLAVFAVD 128


>ref|YP_607295.1| hypothetical protein PSEEN1633 [Pseudomonas entomophila L48]
 emb|CAK14489.1| conserved hypothetical protein; putative signal peptide
           [Pseudomonas entomophila L48]
          Length = 137

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 51/96 (53%)

Query: 25  ERLALPGDDRELVVAEVTYPPGGVAPLHRHPVGGVVFIVEGVAESAYGDEAPRQYRAGET 84
           E+L      ++ V+  V+Y PG  +P H+HP   + +++EG   S   DE+ + Y+AGE 
Sbjct: 37  EQLPTNAPGKKAVMLTVSYAPGQASPAHQHPGAVMAYVLEGAVTSKLNDESEKTYKAGEF 96

Query: 85  LQDRPGVPHTLFRNCDPDRPLRFLTIYALEPGRAYT 120
             + PG  H++ RN    +P + L    ++ GR  T
Sbjct: 97  WYEAPGTVHSVSRNASKTQPAKLLVWSLVDEGRPVT 132


>ref|YP_728442.1| hypothetical protein H16_B0276 [Ralstonia eutropha H16]
 emb|CAJ95077.1| conserved hypothetical protein [Ralstonia eutropha H16]
          Length = 138

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 29  LPGDDRELVVAEVTYPPGGVAPLHRHPVGGVVF--IVEGVAESAYGDEAPRQYRAGETLQ 86
           +PG  + L+  EV YPPGG +  H H     ++  +V G   S   DE  R Y+AGE+  
Sbjct: 42  IPG--KSLIAVEVLYPPGGASHPHTHAKSSFIYAYVVSGSVASKVNDEPERVYKAGESFF 99

Query: 87  DRPGVPHTLFRNCDPDRPLRFLTIYALE 114
           + PG  H + RN    +P + L ++ ++
Sbjct: 100 EEPGARHPVSRNASKTKPAKLLAVFVVD 127