BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0012.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001240909.1| hypothetical protein BBta_4999 [Bradyrhizobi...   122   3e-26
ref|YP_001206279.1| hypothetical protein BRADO4307 [Bradyrhizobi...   112   2e-23
ref|NP_769232.1| hypothetical protein blr2592 [Bradyrhizobium ja...   112   3e-23
ref|YP_001238323.1| hypothetical protein BBta_2239 [Bradyrhizobi...   110   6e-23
ref|NP_772520.1| hypothetical protein bll5880 [Bradyrhizobium ja...   109   1e-22

>ref|YP_001240909.1| hypothetical protein BBta_4999 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37003.1| putative exported protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 153

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/90 (61%), Positives = 65/90 (72%)

Query: 12  HDHQQPELNAWYESLRSVKGPCCDGSDAKRVDDADWDTRNGHYRVRLEGEWVDVPDEAVV 71
           + +  PEL AW++ LRS KGPCC  +D   V D DW++RNGHYRVR+EGEW+DVPDEAV+
Sbjct: 63  YANSSPELKAWFDGLRSGKGPCCSDADGSAVSDVDWESRNGHYRVRIEGEWLDVPDEAVI 122

Query: 72  AGPNRAGRTMVWPYYLDGHPRPRCFMPGSM 101
             PNR GRTMVWP         RCFMPGSM
Sbjct: 123 TEPNRVGRTMVWPMRGYQGLSIRCFMPGSM 152


>ref|YP_001206279.1| hypothetical protein BRADO4307 [Bradyrhizobium sp. ORS 278]
 emb|CAL78055.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 153

 Score =  112 bits (279), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 64/97 (65%), Gaps = 5/97 (5%)

Query: 10  QAHDHQQ-----PELNAWYESLRSVKGPCCDGSDAKRVDDADWDTRNGHYRVRLEGEWVD 64
           QA D  Q     P++ AW++ LRS KGPCC  +D   V D DW+++ GHYRVR+EGEW D
Sbjct: 56  QARDRGQWANSSPDIKAWFDGLRSGKGPCCSDADGSAVSDVDWESKGGHYRVRIEGEWFD 115

Query: 65  VPDEAVVAGPNRAGRTMVWPYYLDGHPRPRCFMPGSM 101
           VPD+AV+  PNR GR MVWP         RCFMPGSM
Sbjct: 116 VPDDAVITEPNRVGRAMVWPMRGYQGLSIRCFMPGSM 152


>ref|NP_769232.1| hypothetical protein blr2592 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC47857.1| blr2592 [Bradyrhizobium japonicum USDA 110]
          Length = 174

 Score =  112 bits (279), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/83 (61%), Positives = 60/83 (72%)

Query: 19  LNAWYESLRSVKGPCCDGSDAKRVDDADWDTRNGHYRVRLEGEWVDVPDEAVVAGPNRAG 78
           L  W++SLRS  GPCC  +D   V D DW++ +GHYRVRL+G+WVDVPDEAV+  PNRAG
Sbjct: 91  LKPWFDSLRSHLGPCCSDADGFAVSDPDWESHDGHYRVRLDGQWVDVPDEAVITEPNRAG 150

Query: 79  RTMVWPYYLDGHPRPRCFMPGSM 101
           RTMVWP         RCFMPGSM
Sbjct: 151 RTMVWPVKTAFGISIRCFMPGSM 173


>ref|YP_001238323.1| hypothetical protein BBta_2239 [Bradyrhizobium sp. BTAi1]
 gb|ABQ34417.1| hypothetical protein BBta_2239 [Bradyrhizobium sp. BTAi1]
          Length = 111

 Score =  110 bits (276), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/88 (62%), Positives = 65/88 (73%), Gaps = 5/88 (5%)

Query: 19  LNAWYESLRSVKGPCCDGSDAKRVDDADWDTRNGHYRVRLEGEWVDVPDEAVVAGPNRAG 78
           L AW+ESLRS KGPCC  +D   + D DW+ ++G YRVR+EG W DVP++AVVAGPNRAG
Sbjct: 23  LKAWFESLRSAKGPCCSDADGTALSDIDWEMQDGRYRVRIEGLWWDVPEDAVVAGPNRAG 82

Query: 79  RTMVWPYY---LDGHPR--PRCFMPGSM 101
           RTMVWP Y   LD   R   RCF+PGSM
Sbjct: 83  RTMVWPVYYRQLDKVLRIEVRCFLPGSM 110


>ref|NP_772520.1| hypothetical protein bll5880 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51145.1| bll5880 [Bradyrhizobium japonicum USDA 110]
          Length = 184

 Score =  109 bits (272), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 59/83 (71%)

Query: 19  LNAWYESLRSVKGPCCDGSDAKRVDDADWDTRNGHYRVRLEGEWVDVPDEAVVAGPNRAG 78
           L  W+ESLRS  G CC  +D   V D DW++  G YRV L+ EWV VPD AV+  PN+ G
Sbjct: 101 LKPWFESLRSEYGQCCSDADGYVVADVDWESDKGRYRVHLDDEWVVVPDGAVITEPNKIG 160

Query: 79  RTMVWPYYLDGHPRPRCFMPGSM 101
           RTMVW +Y+DGHPR RCFMPGSM
Sbjct: 161 RTMVWKHYIDGHPRVRCFMPGSM 183