BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0116.0009.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205785.1| putative two-component response regulator:an...   169   2e-40
ref|YP_001240107.1| response regulator receiver/ANTAR domain-con...   167   6e-40
ref|ZP_08629818.1| response regulator NasT [Bradyrhizobiaceae ba...   166   8e-40
ref|NP_771213.1| two-component response regulator [Bradyrhizobiu...   163   1e-38
ref|YP_780199.1| response regulator receiver/ANTAR domain-contai...   152   1e-35

>ref|YP_001205785.1| putative two-component response regulator:antitermination factor
           NasT [Bradyrhizobium sp. ORS 278]
 emb|CAL77560.1| putative two-component response regulator:antitermination factor
           NasT [Bradyrhizobium sp. ORS 278]
          Length = 196

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/102 (83%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 12  TICAIISAFFFXDGLKKERIKPILDLCVSRFNAFSKLQDELDRTKHALEERKVIDRAKGI 71
           ++ A +SA+   DGLKKERIKPILDLC+SRFNAFSKLQDEL+RTK ALE+RKVIDRAKGI
Sbjct: 96  SVEAGVSAYIV-DGLKKERIKPILDLCISRFNAFSKLQDELERTKSALEDRKVIDRAKGI 154

Query: 72  LMKVKGLTEEEAYVLMRSTAMREKKKIGEIAQSILTASELLK 113
           LMK+KG TEEEAYVL+RSTAMREKKKIGEIAQSILTASE+LK
Sbjct: 155 LMKMKGFTEEEAYVLLRSTAMREKKKIGEIAQSILTASEMLK 196


>ref|YP_001240107.1| response regulator receiver/ANTAR domain-containing protein
           [Bradyrhizobium sp. BTAi1]
 gb|ABQ36201.1| response regulator receiver and ANTAR domain protein
           [Bradyrhizobium sp. BTAi1]
          Length = 196

 Score =  167 bits (422), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 84/102 (82%), Positives = 94/102 (92%), Gaps = 1/102 (0%)

Query: 12  TICAIISAFFFXDGLKKERIKPILDLCVSRFNAFSKLQDELDRTKHALEERKVIDRAKGI 71
           ++ A +SA+   DGLKKERIKPILDLC+SRFNAFSKLQDEL+R K ALE+RKVIDRAKGI
Sbjct: 96  SVEAGVSAYIV-DGLKKERIKPILDLCISRFNAFSKLQDELERAKSALEDRKVIDRAKGI 154

Query: 72  LMKVKGLTEEEAYVLMRSTAMREKKKIGEIAQSILTASELLK 113
           LMK+KG TEEEAYVL+RSTAMREKKKIGEIAQSILTASE+LK
Sbjct: 155 LMKMKGFTEEEAYVLLRSTAMREKKKIGEIAQSILTASEMLK 196


>ref|ZP_08629818.1| response regulator NasT [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07461.1| response regulator NasT [Bradyrhizobiaceae bacterium SG-6C]
          Length = 196

 Score =  166 bits (421), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 82/102 (80%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 12  TICAIISAFFFXDGLKKERIKPILDLCVSRFNAFSKLQDELDRTKHALEERKVIDRAKGI 71
           ++ A +SA+   DGLKKERIKPILDLC+SRFNAFSKLQDELDRT+ ALE+RK++DRAKG+
Sbjct: 96  SVEAGVSAYIV-DGLKKERIKPILDLCISRFNAFSKLQDELDRTRSALEDRKILDRAKGL 154

Query: 72  LMKVKGLTEEEAYVLMRSTAMREKKKIGEIAQSILTASELLK 113
           LMK KGLTEEEAYVL+RSTAMREKKKIGEIAQSI+TA+ELLK
Sbjct: 155 LMKAKGLTEEEAYVLIRSTAMREKKKIGEIAQSIITAAELLK 196


>ref|NP_771213.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC49838.1| two-component response regulator [Bradyrhizobium japonicum USDA
           110]
          Length = 196

 Score =  163 bits (412), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 81/102 (79%), Positives = 95/102 (93%), Gaps = 1/102 (0%)

Query: 12  TICAIISAFFFXDGLKKERIKPILDLCVSRFNAFSKLQDELDRTKHALEERKVIDRAKGI 71
           ++ A +SA+   DGLKKERIKPILDLCVSRFNAF+KLQ+EL+RTK  LE+RK+I+RAKGI
Sbjct: 96  SVEAGVSAYIV-DGLKKERIKPILDLCVSRFNAFAKLQEELERTKSQLEDRKIIERAKGI 154

Query: 72  LMKVKGLTEEEAYVLMRSTAMREKKKIGEIAQSILTASELLK 113
           LMKVKGLTE+EAYVL+RSTAMREKKKIGEIAQSI+TASE+LK
Sbjct: 155 LMKVKGLTEDEAYVLLRSTAMREKKKIGEIAQSIITASEMLK 196


>ref|YP_780199.1| response regulator receiver/ANTAR domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gb|ABJ05219.1| response regulator receiver and ANTAR domain protein
           [Rhodopseudomonas palustris BisA53]
          Length = 194

 Score =  152 bits (385), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 90/102 (88%), Gaps = 1/102 (0%)

Query: 12  TICAIISAFFFXDGLKKERIKPILDLCVSRFNAFSKLQDELDRTKHALEERKVIDRAKGI 71
           ++ A +SA+   DGLKKER+K ILDLC+SRFNAFSKLQDELDR K AL++RKVIDRAKGI
Sbjct: 94  SVDAGVSAYIV-DGLKKERMKHILDLCISRFNAFSKLQDELDRAKTALDDRKVIDRAKGI 152

Query: 72  LMKVKGLTEEEAYVLMRSTAMREKKKIGEIAQSILTASELLK 113
           LMK K LTEE+AYVL+R+TAM EKKKI EIAQS++TASE+LK
Sbjct: 153 LMKAKSLTEEQAYVLLRTTAMNEKKKIVEIAQSVITASEMLK 194