BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0116.0006.p (556 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_773233.1| DNA repair protein [Bradyrhizobium japonicum US... 966 0.0 ref|ZP_08630948.1| DNA repair protein RecN [Bradyrhizobiaceae ba... 918 0.0 ref|YP_533156.1| DNA repair protein RecN [Rhodopseudomonas palus... 909 0.0 ref|YP_781043.1| DNA repair protein RecN [Rhodopseudomonas palus... 897 0.0 ref|YP_576574.1| DNA repair protein RecN [Nitrobacter hamburgens... 891 0.0 >ref|NP_773233.1| DNA repair protein [Bradyrhizobium japonicum USDA 110] dbj|BAC51858.1| DNA repair protein [Bradyrhizobium japonicum USDA 110] Length = 557 Score = 966 bits (2498), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/556 (89%), Positives = 525/556 (94%) Query: 1 MLARLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE 60 MLARLSIRDIVLIERLDIEF+ GLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE Sbjct: 1 MLARLSIRDIVLIERLDIEFATGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE 60 Query: 61 QGQVTAMFDVPKGHPAAGILAENGLDDTGEMILRRVQLADGRTRAFINDQAISVQTLKAV 120 QGQVTA+FD+PK HPAA ILAENGLDDTGEMILRRVQLADGRTRAFINDQ+ISVQTLKAV Sbjct: 61 QGQVTAVFDIPKNHPAAAILAENGLDDTGEMILRRVQLADGRTRAFINDQSISVQTLKAV 120 Query: 121 GAALVEIHGQHDERALVDASTHRQLLDAFAGHEKDVAALEALWDIRRTANADLDEHRAGM 180 GAALVEIHGQHDERALVDA+THR+LLDAFAG EKDVA +E+LWD RRTAN +L+EHRAGM Sbjct: 121 GAALVEIHGQHDERALVDAATHRRLLDAFAGLEKDVAVVESLWDARRTANTELEEHRAGM 180 Query: 181 ERAAREADYLRHASQELKTLAPKEGEETELAGRRTTMMQGEKIATDLREAQEAIGGSHSP 240 ERAAREADYLRHAS ELK LAPK+GEET LA RRTTMMQGEKIA+DLREAQEA+GG+HSP Sbjct: 181 ERAAREADYLRHASDELKQLAPKDGEETSLASRRTTMMQGEKIASDLREAQEAVGGNHSP 240 Query: 241 VASLSAAVRRLERRAANAPALIEPAVKAIDIAINALEEADQHLNAALAATDFDPAELERI 300 VA+LSAAVRRLERR N+PAL+EPAVKAID AINALEEADQHL AALAATDFDPAELERI Sbjct: 241 VAALSAAVRRLERRGVNSPALVEPAVKAIDAAINALEEADQHLQAALAATDFDPAELERI 300 Query: 301 EERLFALRAASRKYSTPVDLLAALAAQYAGDVALIDAGADQLKKLEATAAEADKRYATAA 360 EERLFALRAASRKYSTPVD LAALAA+YA DV LIDAGA +LKKLE A EAD RYA AA Sbjct: 301 EERLFALRAASRKYSTPVDGLAALAAKYAADVVLIDAGASRLKKLEQAAIEADSRYAAAA 360 Query: 361 AKLSAARTKAAEKLNKAVNAELAPLKLERAKFMTQVESNAAAPGPQGIDRVEFWVQTNPG 420 KLS AR K+AEKLNKAVNAELAPLKLERAKFMTQVE++ AAPGPQG DRVEFWVQTNPG Sbjct: 361 KKLSMARQKSAEKLNKAVNAELAPLKLERAKFMTQVETDEAAPGPQGFDRVEFWVQTNPG 420 Query: 421 TKPGPMMKVASGGELSRFLLALKVVLADRGSAPTLVFDEIDTGVGGAVADAIGSRLARLA 480 TKPGP+MKVASGGELSRFLLALKVVL+DRGSAPTLVFDEIDTGVGGAVADAIG RLARLA Sbjct: 421 TKPGPLMKVASGGELSRFLLALKVVLSDRGSAPTLVFDEIDTGVGGAVADAIGGRLARLA 480 Query: 481 GKVQVMAVTHAPQVAARASQHLLISKDALDKGKRVATRVNALAADHRREEIARMLAGAEI 540 GKVQVMAVTHAPQVAARA QHLLISKDALDKGKRVATRVNALAADHRREEIARMLAGAEI Sbjct: 481 GKVQVMAVTHAPQVAARADQHLLISKDALDKGKRVATRVNALAADHRREEIARMLAGAEI 540 Query: 541 TAEARAAAERLLRAAS 556 TAEARAAA+RLL+AA+ Sbjct: 541 TAEARAAADRLLKAAT 556 >ref|ZP_08630948.1| DNA repair protein RecN [Bradyrhizobiaceae bacterium SG-6C] gb|EGP06480.1| DNA repair protein RecN [Bradyrhizobiaceae bacterium SG-6C] Length = 557 Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust. Identities = 477/556 (85%), Positives = 509/556 (91%) Query: 1 MLARLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE 60 MLARLSIRDIVLIERLDI+F GLAVLTGETGAGKSILLDAFALALGGRGDA LVRHGAE Sbjct: 1 MLARLSIRDIVLIERLDIDFLSGLAVLTGETGAGKSILLDAFALALGGRGDASLVRHGAE 60 Query: 61 QGQVTAMFDVPKGHPAAGILAENGLDDTGEMILRRVQLADGRTRAFINDQAISVQTLKAV 120 QGQVTA+FDVPK HPA+ IL ENGLDDTGEMILRRVQ ADGRTRAF+NDQ ISVQTLKA+ Sbjct: 61 QGQVTAVFDVPKKHPASAILRENGLDDTGEMILRRVQFADGRTRAFLNDQTISVQTLKAL 120 Query: 121 GAALVEIHGQHDERALVDASTHRQLLDAFAGHEKDVAALEALWDIRRTANADLDEHRAGM 180 GA LVEIHGQHDERALVD +THR+LLDAFAG EKDV+A+EALW+ RTA LDEHRAGM Sbjct: 121 GATLVEIHGQHDERALVDTATHRRLLDAFAGLEKDVSAVEALWEAHRTARTALDEHRAGM 180 Query: 181 ERAAREADYLRHASQELKTLAPKEGEETELAGRRTTMMQGEKIATDLREAQEAIGGSHSP 240 ERAAREADYLRHAS+ELKTL P+EGEET LA RRTTMMQGEKIA DLREAQ A+GG SP Sbjct: 181 ERAAREADYLRHASEELKTLNPQEGEETSLAERRTTMMQGEKIAEDLREAQAAVGGPGSP 240 Query: 241 VASLSAAVRRLERRAANAPALIEPAVKAIDIAINALEEADQHLNAALAATDFDPAELERI 300 V+SL+AAVRRLERRA +AP+LIEPAVKA+D AINALEEADQHLNAAL A DFDP ELERI Sbjct: 241 VSSLAAAVRRLERRAGSAPSLIEPAVKAMDAAINALEEADQHLNAALIAADFDPHELERI 300 Query: 301 EERLFALRAASRKYSTPVDLLAALAAQYAGDVALIDAGADQLKKLEATAAEADKRYATAA 360 EERLFALR A+RKYSTPVD LAALA +YA DVALIDAGADQLK LE AA ADK Y TAA Sbjct: 301 EERLFALRGAARKYSTPVDELAALAQRYAADVALIDAGADQLKVLEKAAAAADKAYDTAA 360 Query: 361 AKLSAARTKAAEKLNKAVNAELAPLKLERAKFMTQVESNAAAPGPQGIDRVEFWVQTNPG 420 KLSAAR K+AEKLNKAVN+ELAPLKLERAKF TQ+ES+AA+PGPQG DRVEFWVQTNPG Sbjct: 361 QKLSAARNKSAEKLNKAVNSELAPLKLERAKFTTQIESDAASPGPQGFDRVEFWVQTNPG 420 Query: 421 TKPGPMMKVASGGELSRFLLALKVVLADRGSAPTLVFDEIDTGVGGAVADAIGSRLARLA 480 T+PGP+MKVASGGELSRFLLALKVVL+DRGSAPTLVFDEIDTGVGGAVADAIG+RLARLA Sbjct: 421 TRPGPLMKVASGGELSRFLLALKVVLSDRGSAPTLVFDEIDTGVGGAVADAIGARLARLA 480 Query: 481 GKVQVMAVTHAPQVAARASQHLLISKDALDKGKRVATRVNALAADHRREEIARMLAGAEI 540 KVQVMAVTHAPQVAARA QHLLISKDALDKGKRVATRV LA DHRREEIARMLAGAEI Sbjct: 481 EKVQVMAVTHAPQVAARADQHLLISKDALDKGKRVATRVATLAKDHRREEIARMLAGAEI 540 Query: 541 TAEARAAAERLLRAAS 556 TAEARAAA+RLL+AA+ Sbjct: 541 TAEARAAADRLLKAAT 556 >ref|YP_533156.1| DNA repair protein RecN [Rhodopseudomonas palustris BisB18] gb|ABD88837.1| DNA repair protein RecN [Rhodopseudomonas palustris BisB18] Length = 561 Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/560 (85%), Positives = 506/560 (90%), Gaps = 5/560 (0%) Query: 1 MLARLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE 60 MLARLSIRDIVLIERLDIEF+RGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE Sbjct: 1 MLARLSIRDIVLIERLDIEFARGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE 60 Query: 61 QGQVTAMFDVPKGHPAAGILAENGLDD-----TGEMILRRVQLADGRTRAFINDQAISVQ 115 GQVTA FDV +GHPA ILA NGLDD + EMILRRVQLADGRTRAFINDQ +SVQ Sbjct: 61 HGQVTAAFDVARGHPAFAILAANGLDDASPDDSSEMILRRVQLADGRTRAFINDQTVSVQ 120 Query: 116 TLKAVGAALVEIHGQHDERALVDASTHRQLLDAFAGHEKDVAALEALWDIRRTANADLDE 175 TLKAVGA+LVEIHGQHDERALVDA+THR+LLDAFAG EKDVAALE LWD RR A A LD Sbjct: 121 TLKAVGASLVEIHGQHDERALVDAATHRRLLDAFAGLEKDVAALETLWDARRAARATLDA 180 Query: 176 HRAGMERAAREADYLRHASQELKTLAPKEGEETELAGRRTTMMQGEKIATDLREAQEAIG 235 HRAGMERAAREAD+LRHA+ ELK L PK+GEET LA RRTTMMQGEKIA DLREAQEA+ Sbjct: 181 HRAGMERAAREADFLRHAADELKKLNPKDGEETSLAERRTTMMQGEKIAGDLREAQEAVS 240 Query: 236 GSHSPVASLSAAVRRLERRAANAPALIEPAVKAIDIAINALEEADQHLNAALAATDFDPA 295 G HSPVASL+AAVRRLERRA NAPALI+PAVKAID AINALEEADQHL AAL A DFDP Sbjct: 241 GHHSPVASLAAAVRRLERRAGNAPALIDPAVKAIDAAINALEEADQHLTAALIAADFDPL 300 Query: 296 ELERIEERLFALRAASRKYSTPVDLLAALAAQYAGDVALIDAGADQLKKLEATAAEADKR 355 ELERIEERLFALRAASRKYSTPVD LA LA +YA DVALIDAGA QLK LE AAEAD R Sbjct: 301 ELERIEERLFALRAASRKYSTPVDALAELAKKYAADVALIDAGAGQLKALEEKAAEADSR 360 Query: 356 YATAAAKLSAARTKAAEKLNKAVNAELAPLKLERAKFMTQVESNAAAPGPQGIDRVEFWV 415 YA AAAKLSA+R K+AEKLNKAV ELAPLKLERAKFMTQVE++ APGPQG DRVEFWV Sbjct: 361 YAAAAAKLSASRAKSAEKLNKAVAGELAPLKLERAKFMTQVETDPGAPGPQGCDRVEFWV 420 Query: 416 QTNPGTKPGPMMKVASGGELSRFLLALKVVLADRGSAPTLVFDEIDTGVGGAVADAIGSR 475 QTNPGTKPGP+MKVASGGELSRFLLALKVVL+D+GSAPTLVFDEIDTGVGGAVADAIG+R Sbjct: 421 QTNPGTKPGPLMKVASGGELSRFLLALKVVLSDKGSAPTLVFDEIDTGVGGAVADAIGAR 480 Query: 476 LARLAGKVQVMAVTHAPQVAARASQHLLISKDALDKGKRVATRVNALAADHRREEIARML 535 LARLA KVQVMAVTHAPQVAARA QHLLISKDALDKGKRVATRV+AL AD RREEIARML Sbjct: 481 LARLASKVQVMAVTHAPQVAARADQHLLISKDALDKGKRVATRVDALQADRRREEIARML 540 Query: 536 AGAEITAEARAAAERLLRAA 555 AGAEITAEARAAA++L++AA Sbjct: 541 AGAEITAEARAAADQLIKAA 560 >ref|YP_781043.1| DNA repair protein RecN [Rhodopseudomonas palustris BisA53] gb|ABJ06063.1| DNA repair protein RecN [Rhodopseudomonas palustris BisA53] Length = 560 Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 487/559 (87%), Positives = 511/559 (91%), Gaps = 4/559 (0%) Query: 1 MLARLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE 60 MLARLSIRDIVLIERLDIEF+RGLAVLTGETGAGKSILLDAFALALGGRGD+GLVRHG E Sbjct: 1 MLARLSIRDIVLIERLDIEFARGLAVLTGETGAGKSILLDAFALALGGRGDSGLVRHGVE 60 Query: 61 QGQVTAMFDVPKGHPAAGILAENGLDD----TGEMILRRVQLADGRTRAFINDQAISVQT 116 GQVTA FDV KGHPA +LA NGLDD +GEMILRRVQLADGRTRAFINDQ++SVQT Sbjct: 61 HGQVTASFDVAKGHPAFALLAANGLDDRSEESGEMILRRVQLADGRTRAFINDQSVSVQT 120 Query: 117 LKAVGAALVEIHGQHDERALVDASTHRQLLDAFAGHEKDVAALEALWDIRRTANADLDEH 176 LKAVGAALVEIHGQHDERALVDA+THR+LLDAFAG +KDV ALEALWD RR A LDEH Sbjct: 121 LKAVGAALVEIHGQHDERALVDAATHRRLLDAFAGLDKDVVALEALWDARRAARTTLDEH 180 Query: 177 RAGMERAAREADYLRHASQELKTLAPKEGEETELAGRRTTMMQGEKIATDLREAQEAIGG 236 AGMERAAREADYLRHAS ELK L P EGEET LA RR TMMQGEKIA DLREAQE +GG Sbjct: 181 LAGMERAAREADYLRHASDELKKLKPLEGEETSLAERRATMMQGEKIAGDLREAQEVVGG 240 Query: 237 SHSPVASLSAAVRRLERRAANAPALIEPAVKAIDIAINALEEADQHLNAALAATDFDPAE 296 HSPVASLSAAVRRLERRA +APALIEPAVKAID AINALEEADQHLNAALAA DFDP E Sbjct: 241 HHSPVASLSAAVRRLERRAGHAPALIEPAVKAIDAAINALEEADQHLNAALAAADFDPLE 300 Query: 297 LERIEERLFALRAASRKYSTPVDLLAALAAQYAGDVALIDAGADQLKKLEATAAEADKRY 356 LERIEERLFALRAA+RKYSTPVD LAALAA+YA DVALIDAGA +LK E AAEAD RY Sbjct: 301 LERIEERLFALRAAARKYSTPVDGLAALAAKYAADVALIDAGAGKLKGFEQAAAEADARY 360 Query: 357 ATAAAKLSAARTKAAEKLNKAVNAELAPLKLERAKFMTQVESNAAAPGPQGIDRVEFWVQ 416 + AAAKLSAARTK+AEKLNKAVN ELAPLKLERAKFMTQVES+A APGPQGIDRVEFWVQ Sbjct: 361 SAAAAKLSAARTKSAEKLNKAVNGELAPLKLERAKFMTQVESDANAPGPQGIDRVEFWVQ 420 Query: 417 TNPGTKPGPMMKVASGGELSRFLLALKVVLADRGSAPTLVFDEIDTGVGGAVADAIGSRL 476 TNPGTKPGPMMKVASGGELSRFLLALKVVL+D+GSAPTLVFDEIDTGVGGAVADAIG+RL Sbjct: 421 TNPGTKPGPMMKVASGGELSRFLLALKVVLSDKGSAPTLVFDEIDTGVGGAVADAIGARL 480 Query: 477 ARLAGKVQVMAVTHAPQVAARASQHLLISKDALDKGKRVATRVNALAADHRREEIARMLA 536 ARLA KVQVMAVTHAPQVAARA QHLLISKDALDKGKRVATRV+ LAAD RREEIARMLA Sbjct: 481 ARLATKVQVMAVTHAPQVAARADQHLLISKDALDKGKRVATRVDHLAADLRREEIARMLA 540 Query: 537 GAEITAEARAAAERLLRAA 555 GAEITAEARAAA+RL++AA Sbjct: 541 GAEITAEARAAADRLIKAA 559 >ref|YP_576574.1| DNA repair protein RecN [Nitrobacter hamburgensis X14] gb|ABE62114.1| DNA replication and repair protein RecN [Nitrobacter hamburgensis X14] Length = 561 Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/560 (83%), Positives = 510/560 (91%), Gaps = 5/560 (0%) Query: 1 MLARLSIRDIVLIERLDIEFSRGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAE 60 MLARLSIRDIVLIERLDIEF+ GLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGA+ Sbjct: 1 MLARLSIRDIVLIERLDIEFAAGLAVLTGETGAGKSILLDAFALALGGRGDAGLVRHGAD 60 Query: 61 QGQVTAMFDVPKGHPAAGILAENGLD-----DTGEMILRRVQLADGRTRAFINDQAISVQ 115 QGQVTA FD+PK HPA+ ILA N ++ D+GEMILRRVQLADGRTRAFINDQAISVQ Sbjct: 61 QGQVTATFDIPKNHPASAILAANDIEGSISEDSGEMILRRVQLADGRTRAFINDQAISVQ 120 Query: 116 TLKAVGAALVEIHGQHDERALVDASTHRQLLDAFAGHEKDVAALEALWDIRRTANADLDE 175 TLKAVGAALVEIHGQHDERALVDASTHR+LLDAFAG E DVAALE LW+ RRT A LD+ Sbjct: 121 TLKAVGAALVEIHGQHDERALVDASTHRRLLDAFAGLETDVAALETLWEGRRTTRAALDD 180 Query: 176 HRAGMERAAREADYLRHASQELKTLAPKEGEETELAGRRTTMMQGEKIATDLREAQEAIG 235 HRAGMERAAREADYLRHAS EL+ LAP++GEET LA RRTTMM GEKIA DLREAQ+A+ Sbjct: 181 HRAGMERAAREADYLRHASDELRQLAPQDGEETALAERRTTMMAGEKIAADLREAQDAVS 240 Query: 236 GSHSPVASLSAAVRRLERRAANAPALIEPAVKAIDIAINALEEADQHLNAALAATDFDPA 295 G+ SPV+ L+AAVRRLERRAA++P L+EPAV+AID AINALEEADQHL AAL A DFDPA Sbjct: 241 GNRSPVSVLAAAVRRLERRAASSPQLVEPAVRAIDAAINALEEADQHLAAALTAADFDPA 300 Query: 296 ELERIEERLFALRAASRKYSTPVDLLAALAAQYAGDVALIDAGADQLKKLEATAAEADKR 355 ELERIEERLFALRAASRKY+TPVD LAALAA++A DVALIDAGAD+L LE AAEAD+R Sbjct: 301 ELERIEERLFALRAASRKYTTPVDGLAALAAKFANDVALIDAGADRLTVLEKEAAEADRR 360 Query: 356 YATAAAKLSAARTKAAEKLNKAVNAELAPLKLERAKFMTQVESNAAAPGPQGIDRVEFWV 415 +A AAAKLS ART+AAEKL+KAVNAELAPLKL+RA F TQ+ES++A PGPQG DRVEFWV Sbjct: 361 FAAAAAKLSVARTRAAEKLDKAVNAELAPLKLDRATFSTQIESDSATPGPQGFDRVEFWV 420 Query: 416 QTNPGTKPGPMMKVASGGELSRFLLALKVVLADRGSAPTLVFDEIDTGVGGAVADAIGSR 475 QTNPGT+PGP+MKVASGGELSRFLLALKVVL+D+GSAPTLVFDEIDTGVGGAVADAIG+R Sbjct: 421 QTNPGTRPGPLMKVASGGELSRFLLALKVVLSDKGSAPTLVFDEIDTGVGGAVADAIGAR 480 Query: 476 LARLAGKVQVMAVTHAPQVAARASQHLLISKDALDKGKRVATRVNALAADHRREEIARML 535 LARLA KVQVMAVTHAPQVA RA QHLLISKDALD+GKRVATRV LA DHRREEIARML Sbjct: 481 LARLACKVQVMAVTHAPQVAVRADQHLLISKDALDRGKRVATRVATLAQDHRREEIARML 540 Query: 536 AGAEITAEARAAAERLLRAA 555 AGAEITAEARAAA+RLL+AA Sbjct: 541 AGAEITAEARAAADRLLKAA 560