BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0166.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_779188.1| transposase, IS4 family protein [Rhodopseudomon...    62   3e-08
ref|YP_531943.1| transposase, IS4 [Rhodopseudomonas palustris Bi...    62   3e-08
ref|YP_004557138.1| transposase IS4 family protein [Sinorhizobiu...    50   8e-05
ref|YP_003329371.1| hypothetical transposase [Sinorhizobium meli...    50   8e-05
ref|YP_004548638.1| transposase IS4 family protein [Sinorhizobiu...    50   9e-05

>ref|YP_779188.1| transposase, IS4 family protein [Rhodopseudomonas palustris
          BisA53]
 ref|YP_780828.1| transposase, IS4 family protein [Rhodopseudomonas palustris
          BisA53]
 ref|YP_781106.1| transposase, IS4 family protein [Rhodopseudomonas palustris
          BisA53]
 ref|YP_783386.1| transposase, IS4 family protein [Rhodopseudomonas palustris
          BisA53]
 gb|ABJ04208.1| transposase, IS4 family [Rhodopseudomonas palustris BisA53]
 gb|ABJ05848.1| transposase, IS4 family [Rhodopseudomonas palustris BisA53]
 gb|ABJ06126.1| transposase, IS4 family [Rhodopseudomonas palustris BisA53]
 gb|ABJ08406.1| transposase, IS4 family [Rhodopseudomonas palustris BisA53]
          Length = 365

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/29 (89%), Positives = 28/29 (96%)

Query: 1  MQRFAECFEDLPDPRADNALHDLTEILFI 29
          M+RFAECF +LPDPRADNALHDLTEILFI
Sbjct: 1  MERFAECFSELPDPRADNALHDLTEILFI 29


>ref|YP_531943.1| transposase, IS4 [Rhodopseudomonas palustris BisB18]
 gb|ABD87624.1| transposase, IS4 family [Rhodopseudomonas palustris BisB18]
          Length = 369

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/29 (93%), Positives = 27/29 (93%)

Query: 1  MQRFAECFEDLPDPRADNALHDLTEILFI 29
          M RFAECFEDLPDPRA NALHDLTEILFI
Sbjct: 5  MDRFAECFEDLPDPRAGNALHDLTEILFI 33


>ref|YP_004557138.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gb|AEG56258.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
          Length = 358

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 22/29 (75%)

Query: 1  MQRFAECFEDLPDPRADNALHDLTEILFI 29
          M RFA CFEDLPDPR  NA H LT ILFI
Sbjct: 1  MSRFAACFEDLPDPRGRNARHPLTSILFI 29


>ref|YP_003329371.1| hypothetical transposase [Sinorhizobium meliloti]
 gb|ABA56044.1| hypothetical transposase [Sinorhizobium meliloti]
          Length = 105

 Score = 50.4 bits (119), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 22/29 (75%)

Query: 1  MQRFAECFEDLPDPRADNALHDLTEILFI 29
          M RFA CFEDLPDPR  NA H LT ILFI
Sbjct: 1  MSRFAACFEDLPDPRGRNARHPLTSILFI 29


>ref|YP_004548638.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 ref|YP_004550965.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 ref|YP_004556820.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gb|AEG53024.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gb|AEG55351.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
 gb|AEG55940.1| transposase IS4 family protein [Sinorhizobium meliloti AK83]
          Length = 358

 Score = 50.4 bits (119), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 22/29 (75%), Positives = 22/29 (75%)

Query: 1  MQRFAECFEDLPDPRADNALHDLTEILFI 29
          M RFA CFEDLPDPR  NA H LT ILFI
Sbjct: 1  MSRFAACFEDLPDPRGRNARHPLTSILFI 29