BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0159.p (520 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001961008.1| rcorf33 [Agrobacterium rhizogenes] >gi|15832... 714 0.0 ref|NP_066642.1| hypothetical protein pRi1724_p062 [Agrobacteriu... 714 0.0 ref|YP_764677.1| putative component of ABC transporter [Rhizobiu... 678 0.0 ref|YP_002539659.1| ABC-type dipeptide transport system, peripla... 667 0.0 ref|YP_001238648.1| putative ABC transporter substrate-binding p... 657 0.0 >ref|YP_001961008.1| rcorf33 [Agrobacterium rhizogenes] gb|ABW33590.1| rcorf33 [Agrobacterium rhizogenes] Length = 521 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/519 (65%), Positives = 400/519 (77%) Query: 2 INRRDLMLGGLAGAAAFGFGRVNPDFLVNSAFAAEGKTLRFLGAEALTGNWDPTTHTNLG 61 NRR L+ A G +N FLVN A AAE K L+FL AE LTGNWDP++HT L Sbjct: 3 FNRRSLLKSSALAGIALGMPILNTKFLVNPANAAENKVLKFLSAETLTGNWDPSSHTTLA 62 Query: 62 QLIVEGFVFGYLTRAPMRPEKPDELIFELAESMKPIDTYKMEVKLRKGVKFHDGTPFTAA 121 Q+ +E FVFGYLTRAPM PEKPDEL+ ELA MK ID + +E KLR+GV FHDG PF A Sbjct: 63 QINLESFVFGYLTRAPMTPEKPDELVMELATEMKLIDEHTLEFKLREGVTFHDGKPFRAE 122 Query: 122 DVKATYEYGCQPDRPAQWYPGLVTVDVVDDYTCHINTKAQGYPATLYYYLSSFLPIMSAK 181 DVKAT+EY +PDRPA WYPG V+VV DY + T GYPA+L+++LSSFLPIMSAK Sbjct: 123 DVKATFEYASRPDRPAAWYPGPCEVEVVSDYVARVKTDKAGYPASLFWFLSSFLPIMSAK 182 Query: 182 DVANKAQLSARMNGTGPYKYVEQKGDTTVLAANPDFFLGAAKIPGVEYHFVGDTTTRTLS 241 DVA+ LSAR NGTG +K+V+Q G+TTVL A +F+LG IPG+ + FVGD TTRTL+ Sbjct: 183 DVADPKTLSARPNGTGGFKFVKQDGNTTVLEAFDNFYLGKPTIPGLHFSFVGDATTRTLA 242 Query: 242 LLNGEADIIERLEQEQVETISKDARFSIHKAVSVENKYLFFRCSKKPFDDPRIRLAACYS 301 LLNGEAD+IERLE EQVETI K F +HKA+SVENKYL+FRCSK PF+D R+R A C++ Sbjct: 243 LLNGEADLIERLEAEQVETIEKTGGFQLHKAISVENKYLWFRCSKPPFNDWRLRRAVCHA 302 Query: 302 IDRKQVLDVLGVSGIYSKAHISPVKFGYAEVADYPEFDPDKAQKLLAEAGFPKGQGLPEL 361 IDR + D+LGVSG S ++SPVKFGY ++ +YP+FDPD+ QKLLAEAGFPKG+GLPEL Sbjct: 303 IDRSVIDDILGVSGHASNCYVSPVKFGYVDIPNYPKFDPDQCQKLLAEAGFPKGEGLPEL 362 Query: 362 TYYTSVGFYPKTKEYAELITGMLQEQGFKVNLQTLEVAAWGNLLYDKPGGGEGNMIDCGW 421 Y TSVGFYPKTKEYAE IT MLQEQGF V L +EVAAWG+ LYD+PGGG G+MIDCGW Sbjct: 363 EYITSVGFYPKTKEYAEAITAMLQEQGFPVKLNVMEVAAWGDALYDRPGGGPGHMIDCGW 422 Query: 422 CTGSPEPDLVLRTHFHSSSKRITGIVDKDIDAVLDKERNATTIEERKNILQTETLPTIAK 481 TGSPEPDLVLRTHFHS++ RI GI D +IDA LDKERNA+ EERK ++QTE +P +A+ Sbjct: 423 STGSPEPDLVLRTHFHSTTHRICGIQDPEIDAALDKERNASKPEERKKVIQTELMPLLAE 482 Query: 482 KAPALALFTSVFIHAYSKKLDGLYIYPNGMQDMTKATLA 520 K P+ +LFTSVFIH L GLYIYPNGM D KATLA Sbjct: 483 KTPSFSLFTSVFIHGMRDGLSGLYIYPNGMMDANKATLA 521 >ref|NP_066642.1| hypothetical protein pRi1724_p062 [Agrobacterium rhizogenes] dbj|BAA97772.1| riorf61 [Agrobacterium rhizogenes] dbj|BAB16180.1| riorf61 [Agrobacterium rhizogenes] Length = 521 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/519 (65%), Positives = 399/519 (76%) Query: 2 INRRDLMLGGLAGAAAFGFGRVNPDFLVNSAFAAEGKTLRFLGAEALTGNWDPTTHTNLG 61 NRR L+ A G +N FLVN A AAE K L+FL AE LTGNWDP++HT L Sbjct: 3 FNRRSLLKSSALAGIALGMPILNTKFLVNPANAAENKVLKFLSAETLTGNWDPSSHTTLA 62 Query: 62 QLIVEGFVFGYLTRAPMRPEKPDELIFELAESMKPIDTYKMEVKLRKGVKFHDGTPFTAA 121 Q+ +E FVFGYLTRAPM PEKPDEL+ ELA MK ID + +E KLR+GV FHDG PF+A Sbjct: 63 QINLESFVFGYLTRAPMTPEKPDELVMELATEMKLIDEHTLEFKLREGVTFHDGKPFSAE 122 Query: 122 DVKATYEYGCQPDRPAQWYPGLVTVDVVDDYTCHINTKAQGYPATLYYYLSSFLPIMSAK 181 DVKATYEY +PDRPA WYPG V+VV DY + T GYPA+L+++LSSFLPIMSAK Sbjct: 123 DVKATYEYASRPDRPAAWYPGPCEVEVVSDYVARVKTDKAGYPASLFWFLSSFLPIMSAK 182 Query: 182 DVANKAQLSARMNGTGPYKYVEQKGDTTVLAANPDFFLGAAKIPGVEYHFVGDTTTRTLS 241 DVA+ LSAR NGTG +K+V+Q G+TTVL A +F+LG IPG+ + FVGD TTRTL+ Sbjct: 183 DVADPKTLSARPNGTGGFKFVKQDGNTTVLEAFDNFYLGKPTIPGLHFSFVGDATTRTLA 242 Query: 242 LLNGEADIIERLEQEQVETISKDARFSIHKAVSVENKYLFFRCSKKPFDDPRIRLAACYS 301 LLNGEAD+IERLE EQVETI K F +HKA+SVENKYL+FRCSK PF+D R+R A C++ Sbjct: 243 LLNGEADLIERLEAEQVETIEKTGGFQLHKAISVENKYLWFRCSKPPFNDWRLRRAVCHA 302 Query: 302 IDRKQVLDVLGVSGIYSKAHISPVKFGYAEVADYPEFDPDKAQKLLAEAGFPKGQGLPEL 361 IDR + D+LGVSG S ++SPVKFGY ++ +YP+FDP++ QKLLAEAGFPKG+GLPEL Sbjct: 303 IDRSVIDDILGVSGHASNCYVSPVKFGYVDIPNYPKFDPEQCQKLLAEAGFPKGEGLPEL 362 Query: 362 TYYTSVGFYPKTKEYAELITGMLQEQGFKVNLQTLEVAAWGNLLYDKPGGGEGNMIDCGW 421 Y TSVGFYPKTKEYAE IT MLQEQGF V L +EVAAWG+ LYD+PGGG G+MIDCGW Sbjct: 363 EYITSVGFYPKTKEYAEAITAMLQEQGFPVKLNVMEVAAWGDALYDRPGGGPGHMIDCGW 422 Query: 422 CTGSPEPDLVLRTHFHSSSKRITGIVDKDIDAVLDKERNATTIEERKNILQTETLPTIAK 481 TGSPEPDLVLRTHFHS++ RI GI D +IDA LDKERNA EERK ++QTE +P +A Sbjct: 423 STGSPEPDLVLRTHFHSTTHRICGIQDPEIDAALDKERNAAKPEERKKVIQTELMPLLAT 482 Query: 482 KAPALALFTSVFIHAYSKKLDGLYIYPNGMQDMTKATLA 520 K P+ +LFTSVFIH L GLYIYPNGM D KATLA Sbjct: 483 KTPSFSLFTSVFIHGMRDGLSGLYIYPNGMMDANKATLA 521 >ref|YP_764677.1| putative component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] emb|CAK11877.1| putative component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] Length = 527 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/524 (61%), Positives = 407/524 (77%), Gaps = 5/524 (0%) Query: 2 INRRDLMLGGLAGAAAFGFGRVNPDFLVNSAFAAEGKTLRFLGAEALTGNWDPTTHTNLG 61 I+RR+ + G A G ++NPDFL +SAFA GKT+ FL AE +TGNWDPT HT L Sbjct: 4 ISRRNFLAGLGAAGTGAGLLQINPDFLFSSAFAQSGKTVVFLSAENITGNWDPTGHTTLS 63 Query: 62 QLIVEGFVFGYLTRAPMRPEKPDELIFELAESMKPIDTYKMEVKLRKGVKFHDGTPFTAA 121 Q +EGFV G+LTR PM EKPDE+++ELA S+K +D K+E+KLR+GVKFHDG PF A Sbjct: 64 QKNIEGFVMGFLTRTPMTVEKPDEVVYELATSIKLLDPNKLEIKLREGVKFHDGKPFKAE 123 Query: 122 DVKATYEYGCQPDRPAQWYPGLVTVDVV---DDYTCHINTKAQGYPATLYYYLSSFLPIM 178 DVKAT+EYG PDRPAQ+YPG V+ DDYT ++T GYPA L+ +L+S+LPIM Sbjct: 124 DVKATFEYGSGPDRPAQFYPGPTETLVITTPDDYTVIVDTSKGGYPAHLFIFLASYLPIM 183 Query: 179 SAKDVAN--KAQLSARMNGTGPYKYVEQKGDTTVLAANPDFFLGAAKIPGVEYHFVGDTT 236 SA DVA L+ R+NGTGP+K+V+Q+G+ T+L A PD+FLG KIPG+ ++FVGD+T Sbjct: 184 SATDVAGGPTGPLTQRLNGTGPFKFVKQEGNATILEAYPDYFLGTPKIPGISFNFVGDST 243 Query: 237 TRTLSLLNGEADIIERLEQEQVETISKDARFSIHKAVSVENKYLFFRCSKKPFDDPRIRL 296 TR LSLLNG+A I+ERLE EQV ++ + + +I VSVENKYL+FRCSK PFD+P IR Sbjct: 244 TRMLSLLNGQASIVERLEPEQVTSLQGNDKIAISSVVSVENKYLWFRCSKAPFDNPLIRK 303 Query: 297 AACYSIDRKQVLDVLGVSGIYSKAHISPVKFGYAEVADYPEFDPDKAQKLLAEAGFPKGQ 356 AAC++IDR ++++LG +G S ++SPVKFGY ++ +YPE+ P+K Q LLAEAGFPKG+ Sbjct: 304 AACHAIDRSMIVEILGSAGHASSNYVSPVKFGYIDLPNYPEYSPEKCQALLAEAGFPKGE 363 Query: 357 GLPELTYYTSVGFYPKTKEYAELITGMLQEQGFKVNLQTLEVAAWGNLLYDKPGGGEGNM 416 GLP L Y TSVGFYPKTKEY E+IT MLQEQGF+V+L LE+AAW LYD+PGGG G+M Sbjct: 364 GLPPLEYITSVGFYPKTKEYGEVITAMLQEQGFQVSLSVLEIAAWNERLYDRPGGGPGHM 423 Query: 417 IDCGWCTGSPEPDLVLRTHFHSSSKRITGIVDKDIDAVLDKERNATTIEERKNILQTETL 476 +DCGW TGSPEPDLVLRTHFHS+SKRITGIVDK++DA LDKER+A +++ERK ILQTET+ Sbjct: 424 VDCGWSTGSPEPDLVLRTHFHSTSKRITGIVDKELDATLDKERSAPSLDERKKILQTETM 483 Query: 477 PTIAKKAPALALFTSVFIHAYSKKLDGLYIYPNGMQDMTKATLA 520 P +A+K PAL+LFTSV IHA K L GL+IYP+G D +KA + Sbjct: 484 PMLAEKVPALSLFTSVMIHAMDKSLAGLFIYPDGSMDASKAAFS 527 >ref|YP_002539659.1| ABC-type dipeptide transport system, periplasmic component [Agrobacterium vitis S4] gb|ACM39954.1| ABC-type dipeptide transport system, periplasmic component [Agrobacterium vitis S4] Length = 528 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 317/521 (60%), Positives = 401/521 (76%), Gaps = 6/521 (1%) Query: 2 INRRDLMLGGLAGAAAFGFGRVNPDFLVNSAFAAEGKTLRFLGAEALTGNWDPTTHTNLG 61 INRR + G + AAA GF ++NPDF ++SAFA GKT+ FL AE +TGNWDPT HT L Sbjct: 5 INRRRFLQGTVGAAAAAGFMQMNPDFFISSAFAQSGKTMTFLSAENITGNWDPTAHTTLS 64 Query: 62 QLIVEGFVFGYLTRAPMRPEKPDELIFELAESMKPIDTYKMEVKLRKGVKFHDGTPFTAA 121 Q +EGFV G+LTR+PM+ + P E+++ELA +K +D +++++ LR+G+ FHDG PF A Sbjct: 65 QKNIEGFVMGFLTRSPMKLDNPGEVVYELATDIKLLDAHRLQITLRQGITFHDGKPFKAE 124 Query: 122 DVKATYEYGCQPDRPAQWYPG---LVTVDVVDDYTCHINTKAQGYPATLYYYLSSFLPIM 178 DVKAT EYG + DRPAQWYPG +T++ DDYT I+T GYPA L+ +L+SFLP+M Sbjct: 125 DVKATLEYGSRADRPAQWYPGPTETLTIETPDDYTVIIDTSKGGYPAHLFIFLASFLPMM 184 Query: 179 SAKDVANK--AQLSARMNGTGPYKYVEQKGDTTVLAANPDFFLGAAKIPGVEYHFVGDTT 236 SAKDVA LS R+NGTGP+K+VEQ+G+ TV+ A +F G IPG+ + F GD+T Sbjct: 185 SAKDVAGGPGGVLSQRLNGTGPFKFVEQRGNDTVMVAFDGYFKGKPGIPGINFTFTGDST 244 Query: 237 TRTLSLLNGEADIIERLEQEQVETISKDARFSIHKAVSVENKYLFFRCSKKPFDDPRIRL 296 TR LSL+NG+A I+ERLE EQV T+ + + +I++ VSVENKYL+FRCSK PF+DPR+RL Sbjct: 245 TRMLSLMNGQASIVERLEPEQVATLKGNPQIAINEVVSVENKYLWFRCSKPPFNDPRVRL 304 Query: 297 AACYSIDRKQVLDVLGVSGIYSKAHISPVKFGYAEVADYPEFDPDKAQKLLAEAGFPKGQ 356 AAC++IDR +L+VLG +G S +SPVKFGYA++ +YP++DP+K Q LLAEAGFP G+ Sbjct: 305 AACHAIDRDMILEVLGSAGHASSNFVSPVKFGYADLENYPKYDPEKCQALLAEAGFPNGK 364 Query: 357 GLPELTYYTSVGFYPKTKEYAELITGMLQEQGFKVNLQTLEVAAWGNLLYDKPGGGEGNM 416 GLP L Y TSVGFYPKTKEY E++TGML EQGF V+L LE AAW LYD+PGGG G+M Sbjct: 365 GLPPLEYITSVGFYPKTKEYGEVLTGMLNEQGFPVSLTVLEPAAWNEQLYDRPGGGPGHM 424 Query: 417 IDCGWCTGSPEPDLVLRTHFHSSSKRITGIVDKDIDAVLDKERNATTIEERKNILQTETL 476 +DCGW T SPEPDLVLRTHFHSSSKRI GIVDKDIDA LDKERNA +EERK +LQ+ET+ Sbjct: 425 VDCGWSTASPEPDLVLRTHFHSSSKRICGIVDKDIDASLDKERNAANLEERKKVLQSETM 484 Query: 477 PTIAKKAPALALFTSVFIHAYSKKL-DGLYIYPNGMQDMTK 516 P IA K PAL+LFTSV IHA K+ +GLYIYP+G D +K Sbjct: 485 PLIASKMPALSLFTSVMIHAMQKEFKEGLYIYPDGSMDASK 525 >ref|YP_001238648.1| putative ABC transporter substrate-binding protein [Bradyrhizobium sp. BTAi1] gb|ABQ34742.1| putative ABC transporter, substrate-binding protein [Bradyrhizobium sp. BTAi1] Length = 526 Score = 657 bits (1695), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/521 (60%), Positives = 396/521 (76%), Gaps = 6/521 (1%) Query: 2 INRRDLMLGGLAGAAAFGFGRVNPDFLVNSAFAAEGKTLRFLGAEALTGNWDPTTHTNLG 61 +RR M G A AAA G+ ++NPDF V+ AFA GKTL FL AE +TGNWDPT HT L Sbjct: 5 FSRRHFM-QGAAAAAAAGYMQINPDFFVSRAFAQSGKTLTFLSAENITGNWDPTAHTTLS 63 Query: 62 QLIVEGFVFGYLTRAPMRPEKPDELIFELAESMKPIDTYKMEVKLRKGVKFHDGTPFTAA 121 Q +EGFV G+LTR PM+ +KPDE+++ELA +K +D ++++KLR+GV FHDG PF A Sbjct: 64 QKNIEGFVMGFLTRTPMKLDKPDEVVYELATDIKLLDPNRLQIKLREGVVFHDGKPFKAE 123 Query: 122 DVKATYEYGCQPDRPAQWYPG---LVTVDVVDDYTCHINTKAQGYPATLYYYLSSFLPIM 178 DVKAT+EYG + DRPAQWYPG + +D DDYT ++T GYPA L+ +L++FLP+M Sbjct: 124 DVKATFEYGARADRPAQWYPGPTETLKIDTPDDYTVIVDTSKGGYPAHLFMFLAAFLPMM 183 Query: 179 SAKDVANK--AQLSARMNGTGPYKYVEQKGDTTVLAANPDFFLGAAKIPGVEYHFVGDTT 236 SAKD+A LS R+NGTGP K+VEQ+G++TV+ AN +F G I G+ ++FVGD+T Sbjct: 184 SAKDIAAGPGGVLSQRLNGTGPLKFVEQRGNSTVMVANEGYFKGKPAIAGINFNFVGDST 243 Query: 237 TRTLSLLNGEADIIERLEQEQVETISKDARFSIHKAVSVENKYLFFRCSKKPFDDPRIRL 296 TR LSL+NG+A I+ERLE EQV+T+ +A I++ VSVENKYL+FRCSK PF+DPRIRL Sbjct: 244 TRMLSLMNGQASIVERLEPEQVDTVKANANIHINRVVSVENKYLWFRCSKPPFNDPRIRL 303 Query: 297 AACYSIDRKQVLDVLGVSGIYSKAHISPVKFGYAEVADYPEFDPDKAQKLLAEAGFPKGQ 356 AAC++I+R +L+VLG +G S +SPVKFGY ++ +YP+FDP K Q LLAEAGFPKG+ Sbjct: 304 AACHAINRDVILEVLGSAGHASSNFVSPVKFGYFDLPNYPKFDPAKCQALLAEAGFPKGK 363 Query: 357 GLPELTYYTSVGFYPKTKEYAELITGMLQEQGFKVNLQTLEVAAWGNLLYDKPGGGEGNM 416 GLP L Y TSVGFYPKTKEY E++T ML EQGF V+L LE AAW LY +PGGG G+M Sbjct: 364 GLPPLEYITSVGFYPKTKEYGEVLTAMLNEQGFNVSLTVLEPAAWNERLYHRPGGGPGHM 423 Query: 417 IDCGWCTGSPEPDLVLRTHFHSSSKRITGIVDKDIDAVLDKERNATTIEERKNILQTETL 476 +DCGW TGSPEPDL+LRTHFHS+S RI GI D IDA LDKER+A T+EERK ILQTET+ Sbjct: 424 VDCGWSTGSPEPDLILRTHFHSTSHRICGIEDAAIDASLDKERSAPTLEERKKILQTETM 483 Query: 477 PTIAKKAPALALFTSVFIHAYSKKLDGLYIYPNGMQDMTKA 517 P IA K PAL+LFTSV IHA K GL+IYP+G D +K+ Sbjct: 484 PLIASKMPALSLFTSVMIHAMHKDYAGLFIYPDGSMDASKS 524