BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0157.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_764675.1| putative permease component of ABC transporter ... 385 e-105 ref|YP_002542373.1| dipeptide ABC transporter [Agrobacterium rad... 366 3e-99 ref|YP_001961010.1| rcorf35 [Agrobacterium rhizogenes] >gi|15832... 362 3e-98 ref|YP_351495.1| ABC peptide/nickel/opine transporter, inner mem... 362 5e-98 ref|ZP_08414239.1| binding-protein-dependent transport systems i... 362 5e-98 >ref|YP_764675.1| putative permease component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] emb|CAK11875.1| putative permease component of ABC transporter [Rhizobium leguminosarum bv. viciae 3841] Length = 308 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/301 (63%), Positives = 234/301 (77%), Gaps = 6/301 (1%) Query: 10 EPALPAAPI------RSVNRRIMAAAWRMPSFKIGFFIFIALVLASAIYPEVSSISATKM 63 E +PA P+ SV RRI A F+ G IFI LVLA+ +YPE+S I TKM Sbjct: 6 ETDIPAVPVPATQRGASVARRIWRIALASNEFRFGAAIFIVLVLAALLYPELSGIDPTKM 65 Query: 64 VVKDKFMSPVFLGDKWTWDHPLGTDQLGRDMLMRSLIGLRYSLLVGVVTVVLIFVIGCGL 123 V + +P F+G+KW+W PLGTDQ+GRDML+RSL+GLRYSLL+G+ TV+++ +IGC L Sbjct: 66 SVATRLHAPPFMGEKWSWTAPLGTDQIGRDMLVRSLVGLRYSLLIGLSTVLVMLIIGCSL 125 Query: 124 GLFAGFKGKWWDTVIMRITDAQLSIPMIILAITILGVSRPTVPTIIIVLALSGWPLYARV 183 G AG+ G D VIMR+TDAQLSIPMIILAIT+LGVSRPT+P II+VL LS WP+YARV Sbjct: 126 GTIAGYYGGRVDMVIMRLTDAQLSIPMIILAITVLGVSRPTIPAIILVLGLSSWPVYARV 185 Query: 184 ARSAAVTERGKEYVRGLRVLGAGDWRILFLFAAPNILPPIAFVAVLDVARMMIFEAILGF 243 RS +TER +EYVR + GA D+RI+ AP +LPPI FV+VLDVARMMIFE+ILGF Sbjct: 186 TRSVVMTERKREYVRAAEIYGASDFRIMVRLLAPLVLPPIIFVSVLDVARMMIFESILGF 245 Query: 244 LGLGIQPPTPSFGSIIADSRKYLINAWWIATTPGVFLAIALTSINLMGSALEKARNRIYG 303 +GLG+QPPTP+FG+IIAD RKYL+NAWWIAT PGVFL + LTSINLMG++LE+ARNRIYG Sbjct: 246 IGLGVQPPTPTFGNIIADGRKYLLNAWWIATMPGVFLCLCLTSINLMGASLERARNRIYG 305 Query: 304 G 304 G Sbjct: 306 G 306 >ref|YP_002542373.1| dipeptide ABC transporter [Agrobacterium radiobacter K84] gb|ACM30776.1| dipeptide ABC transporter [Agrobacterium radiobacter K84] Length = 306 Score = 366 bits (939), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 185/304 (60%), Positives = 230/304 (75%) Query: 1 MTATTIIAEEPALPAAPIRSVNRRIMAAAWRMPSFKIGFFIFIALVLASAIYPEVSSISA 60 M A P A RSV RI+ A P FKIG IFI L +A+A YPE+S I Sbjct: 1 MMAVMTSTSTPVPQKAVSRSVASRIIRRATATPGFKIGLIIFILLAVATATYPELSGIDP 60 Query: 61 TKMVVKDKFMSPVFLGDKWTWDHPLGTDQLGRDMLMRSLIGLRYSLLVGVVTVVLIFVIG 120 TKM VK + P+F+GDKW+W HPLGTDQ+GRDML+RSL+GLRYS L+GV +V + +IG Sbjct: 61 TKMDVKARLFGPLFIGDKWSWIHPLGTDQIGRDMLVRSLVGLRYSFLIGVSSVAVTLLIG 120 Query: 121 CGLGLFAGFKGKWWDTVIMRITDAQLSIPMIILAITILGVSRPTVPTIIIVLALSGWPLY 180 C LG AG+ G DTVIMR+TDAQLSIPMIILAI +LGVSRPT+P II+VL +S WP Y Sbjct: 121 CALGTIAGYFGGRTDTVIMRLTDAQLSIPMIILAIAVLGVSRPTIPAIILVLGVSSWPTY 180 Query: 181 ARVARSAAVTERGKEYVRGLRVLGAGDWRILFLFAAPNILPPIAFVAVLDVARMMIFEAI 240 AR+ RS +TER +EYVR ++ G+ D RI+ AP +LPP+ F +VLD+ARMMIFE++ Sbjct: 181 ARIMRSIVMTERQREYVRAAKLSGSTDVRIILSLLAPLLLPPVLFTSVLDIARMMIFESV 240 Query: 241 LGFLGLGIQPPTPSFGSIIADSRKYLINAWWIATTPGVFLAIALTSINLMGSALEKARNR 300 LGFLGLG+QPPTP+FG+IIAD RKYL+NAWWIAT PG+FL + LTSINL+G++LE+ARN Sbjct: 241 LGFLGLGVQPPTPTFGNIIADGRKYLLNAWWIATMPGIFLGLTLTSINLVGASLERARNN 300 Query: 301 IYGG 304 I+GG Sbjct: 301 IHGG 304 >ref|YP_001961010.1| rcorf35 [Agrobacterium rhizogenes] gb|ABW33592.1| rcorf35 [Agrobacterium rhizogenes] Length = 305 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 188/283 (66%), Positives = 223/283 (78%), Gaps = 1/283 (0%) Query: 22 NRRIMAAAWRMPSFKIGFFIFIALVLASAIYPEVSSISATKMVVKDKFMSPVFLGDKWTW 81 RR++ A F+IG F L+ + + P VSS+ KM KF+ P F + W W Sbjct: 22 TRRMLQIAVGRLDFRIGLIGFGLLLGLAILLPFVSSVDPLKMAYSHKFIPP-FPSEGWQW 80 Query: 82 DHPLGTDQLGRDMLMRSLIGLRYSLLVGVVTVVLIFVIGCGLGLFAGFKGKWWDTVIMRI 141 + LGTDQLGRD+LMR L+GL YSL +GV TVVL+F++GC LGL AGF+G W DTVIMR+ Sbjct: 81 PYVLGTDQLGRDVLMRCLVGLCYSLFIGVTTVVLMFIVGCSLGLLAGFRGGWLDTVIMRL 140 Query: 142 TDAQLSIPMIILAITILGVSRPTVPTIIIVLALSGWPLYARVARSAAVTERGKEYVRGLR 201 TDAQLSIPMIILAITILGVSRPTVP II+VL LSGWPLYARVARS A+ ER + YV G R Sbjct: 141 TDAQLSIPMIILAITILGVSRPTVPAIILVLGLSGWPLYARVARSVALGERNRGYVLGER 200 Query: 202 VLGAGDWRILFLFAAPNILPPIAFVAVLDVARMMIFEAILGFLGLGIQPPTPSFGSIIAD 261 VLGA D RI+ LF AP +LPPIAFVAVLD+ARMMIFE+ILGFLGLG+QPPTP+FG++IAD Sbjct: 201 VLGASDLRIMLLFVAPVVLPPIAFVAVLDIARMMIFESILGFLGLGVQPPTPTFGNVIAD 260 Query: 262 SRKYLINAWWIATTPGVFLAIALTSINLMGSALEKARNRIYGG 304 SRKYL+NAWWIAT PG+FL I+LT +NLMGSALE+ARN + G Sbjct: 261 SRKYLLNAWWIATMPGLFLLISLTCLNLMGSALERARNAVLRG 303 >ref|YP_351495.1| ABC peptide/nickel/opine transporter, inner membrane subunit [Rhodobacter sphaeroides 2.4.1] ref|YP_001041994.1| binding-protein-dependent transport systems inner membrane component [Rhodobacter sphaeroides ATCC 17029] gb|ABA77594.1| ABC peptide/nickel/opine transporter, inner membrane subunit [Rhodobacter sphaeroides 2.4.1] gb|ABN75222.1| binding-protein-dependent transport systems inner membrane component [Rhodobacter sphaeroides ATCC 17029] Length = 303 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 188/293 (64%), Positives = 236/293 (80%), Gaps = 1/293 (0%) Query: 12 ALPAAPIRSVNRRIMAAAWRMPSFKIGFFIFIALVLASAIYPEVSSISATKMVVKDKFMS 71 A+PA R V+ RI A+ F+IG +F+ L+ A+ +YPE+S I +KM ++ K Sbjct: 11 AVPATG-RRVSTRIWQTAFASVEFRIGLAVFVLLLAAALLYPELSGIDPSKMNIRAKLTP 69 Query: 72 PVFLGDKWTWDHPLGTDQLGRDMLMRSLIGLRYSLLVGVVTVVLIFVIGCGLGLFAGFKG 131 P+F+G+ W+W HPLGTDQLGRDML R+L+GLRYSLL+GV T VL+ + G +GLF+G+ G Sbjct: 70 PIFMGEGWSWAHPLGTDQLGRDMLARALVGLRYSLLIGVSTTVLMLLAGAMIGLFSGYFG 129 Query: 132 KWWDTVIMRITDAQLSIPMIILAITILGVSRPTVPTIIIVLALSGWPLYARVARSAAVTE 191 DTV+MR+TDAQLSIPMIILAITILGVSRPT+P+II+VL L+GWP+YARV RS ++E Sbjct: 130 GRTDTVLMRLTDAQLSIPMIILAITILGVSRPTIPSIILVLGLAGWPVYARVMRSTVMSE 189 Query: 192 RGKEYVRGLRVLGAGDWRILFLFAAPNILPPIAFVAVLDVARMMIFEAILGFLGLGIQPP 251 R KEYVRG VLGA D RI+F P +LPP+AFVAVLD+ARMMIFE++LGFLGLG+QPP Sbjct: 190 RRKEYVRGAMVLGATDLRIMFTLLLPLVLPPMAFVAVLDIARMMIFESVLGFLGLGVQPP 249 Query: 252 TPSFGSIIADSRKYLINAWWIATTPGVFLAIALTSINLMGSALEKARNRIYGG 304 TP+FG++IAD RKYL+NAWWIAT PGVFL + LTSINLMG+ALE+ARN IYGG Sbjct: 250 TPTFGNVIADGRKYLMNAWWIATMPGVFLVLTLTSINLMGAALERARNSIYGG 302 >ref|ZP_08414239.1| binding-protein-dependent transport systems inner membrane component [Rhodobacter sphaeroides WS8N] gb|EGJ22944.1| binding-protein-dependent transport systems inner membrane component [Rhodobacter sphaeroides WS8N] Length = 303 Score = 362 bits (928), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 188/293 (64%), Positives = 236/293 (80%), Gaps = 1/293 (0%) Query: 12 ALPAAPIRSVNRRIMAAAWRMPSFKIGFFIFIALVLASAIYPEVSSISATKMVVKDKFMS 71 A+PA R V+ RI A+ F+IG +F+ L+ A+ +YPE+S I +KM ++ K Sbjct: 11 AVPATG-RRVSTRIWQTAFASVEFRIGLAVFVLLLAAALLYPELSGIDPSKMNIRAKLTP 69 Query: 72 PVFLGDKWTWDHPLGTDQLGRDMLMRSLIGLRYSLLVGVVTVVLIFVIGCGLGLFAGFKG 131 P+F+G+ W+W HPLGTDQLGRDML R+L+GLRYSLL+GV T VL+ + G +GLF+G+ G Sbjct: 70 PIFMGEGWSWAHPLGTDQLGRDMLARALVGLRYSLLIGVSTTVLMLLAGAMIGLFSGYFG 129 Query: 132 KWWDTVIMRITDAQLSIPMIILAITILGVSRPTVPTIIIVLALSGWPLYARVARSAAVTE 191 DTV+MR+TDAQLSIPMIILAITILGVSRPT+P+II+VL L+GWP+YARV RS ++E Sbjct: 130 GRTDTVLMRLTDAQLSIPMIILAITILGVSRPTIPSIILVLGLAGWPVYARVMRSTVMSE 189 Query: 192 RGKEYVRGLRVLGAGDWRILFLFAAPNILPPIAFVAVLDVARMMIFEAILGFLGLGIQPP 251 R KEYVRG VLGA D RI+F P +LPP+AFVAVLD+ARMMIFE++LGFLGLG+QPP Sbjct: 190 RRKEYVRGAMVLGATDLRIMFTLLLPLVLPPMAFVAVLDIARMMIFESVLGFLGLGVQPP 249 Query: 252 TPSFGSIIADSRKYLINAWWIATTPGVFLAIALTSINLMGSALEKARNRIYGG 304 TP+FG++IAD RKYL+NAWWIAT PGVFL + LTSINLMG+ALE+ARN IYGG Sbjct: 250 TPTFGNVIADGRKYLMNAWWIATMPGVFLVLTLTSINLMGAALERARNSIYGG 302