BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0141.p         (113 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002362040.1| DNA topoisomerase [Methylocella silvestris B...    71   5e-11
ref|YP_579129.1| putative DNA topoisomerase I [Nitrobacter hambu...    67   6e-10
ref|YP_002500500.1| putative DNA topoisomerase I [Methylobacteri...    67   6e-10
ref|ZP_08262535.1| DNA topoisomerase I [Asticcacaulis biprosthec...    62   3e-08
ref|YP_003050182.1| DNA topoisomerase [Methylovorus glucosetroph...    62   4e-08

>ref|YP_002362040.1| DNA topoisomerase [Methylocella silvestris BL2]
 gb|ACK50678.1| DNA topoisomerase [Methylocella silvestris BL2]
          Length = 366

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 49/97 (50%), Gaps = 37/97 (38%)

Query: 25  GLRYASDATPGYRRKRTGT-------------------------------------SSNG 47
           GLRY SD+ PG  R+++G                                      S NG
Sbjct: 22  GLRYVSDSRPGISRRKSGKGFSYRHPGGGLVRDAATLKRIRSLAIPPAYADVWICPSPNG 81

Query: 48  HIQATGLDARRRKRFRHHPTWRELREQSTYEHVMQFA 84
           HIQATG DAR+RK++R+HP +RELRE + YEHVM FA
Sbjct: 82  HIQATGRDARKRKQYRYHPAFRELRESAKYEHVMAFA 118


>ref|YP_579129.1| putative DNA topoisomerase I [Nitrobacter hamburgensis X14]
 gb|ABE64669.1| putative DNA topoisomerase I [Nitrobacter hamburgensis X14]
          Length = 363

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 37/97 (38%)

Query: 25  GLRYASDATPGYRRKRTGTS-------------------------------------SNG 47
           GLRY SDA PG +RK+ GT                                      ++G
Sbjct: 15  GLRYVSDARPGIKRKKAGTGFTYLRADGSKLTEPDVLNRIKSLAIPPAWSDVWICPFNDG 74

Query: 48  HIQATGLDARRRKRFRHHPTWRELREQSTYEHVMQFA 84
           HIQATG DA+ RK++R+HP +RE+RE + YEHV+ FA
Sbjct: 75  HIQATGRDAKGRKQYRYHPRFREVRESTKYEHVVAFA 111


>ref|YP_002500500.1| putative DNA topoisomerase I [Methylobacterium nodulans ORS 2060]
 gb|ACL60197.1| putative DNA topoisomerase I [Methylobacterium nodulans ORS 2060]
          Length = 396

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 47/99 (47%), Gaps = 37/99 (37%)

Query: 23  EDGLRYASDATPGYRRKRTG-------------------------------------TSS 45
           E GLRY SD  PGYRRKR G                                       +
Sbjct: 24  EAGLRYVSDEEPGYRRKRNGRGFRYIDPDGRPVKDEAVLKRIKALAIPPAYTEVWICQHA 83

Query: 46  NGHIQATGLDARRRKRFRHHPTWRELREQSTYEHVMQFA 84
           NGHIQATG D R RK++R+HP +RE+RE + + H+M FA
Sbjct: 84  NGHIQATGRDERGRKQYRYHPQFREVRESTKFAHMMAFA 122


>ref|ZP_08262535.1| DNA topoisomerase I [Asticcacaulis biprosthecum C19]
 gb|EGF92139.1| DNA topoisomerase I [Asticcacaulis biprosthecum C19]
          Length = 350

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 25/52 (48%), Positives = 36/52 (69%)

Query: 34  PGYRRKRTGTSSNGHIQATGLDARRRKRFRHHPTWRELREQSTYEHVMQFAA 85
           P YR        +GH+QATG+DAR RK++R+HP WR LR+ + + H++ FAA
Sbjct: 64  PAYRDVWICADPSGHLQATGIDARGRKQYRYHPDWRCLRDGTKFSHILNFAA 115


>ref|YP_003050182.1| DNA topoisomerase [Methylovorus glucosetrophus SIP3-4]
 gb|ACT49655.1| DNA topoisomerase [Methylovorus glucosetrophus SIP3-4]
          Length = 374

 Score = 61.6 bits (148), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 46/96 (47%), Gaps = 37/96 (38%)

Query: 26  LRYASDATPGYRRKRTGTS-------------------------------------SNGH 48
           LRY +D TPG+ RKRT                                        +NGH
Sbjct: 34  LRYVNDGTPGFARKRTAKGFRYVDRQGRPLHEKTHLARIRALAIPPAWQDVWICPYANGH 93

Query: 49  IQATGLDARRRKRFRHHPTWRELREQSTYEHVMQFA 84
           IQATG+DA+ RK++R+H  WR +R+++ Y H++ FA
Sbjct: 94  IQATGVDAKGRKQYRYHKEWRAIRDEAKYAHMLDFA 129