BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0125.p         (87 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001206824.1| putative methionyl-tRNA formyltransferase [B...   100   9e-20
ref|YP_001239177.1| hypothetical protein BBta_3156 [Bradyrhizobi...    95   3e-18
ref|NP_770330.1| hypothetical protein bll3690 [Bradyrhizobium ja...    68   4e-10
ref|YP_002952701.1| hypothetical protein DMR_13240 [Desulfovibri...    42   0.031
ref|YP_755429.1| hypothetical protein Mmar10_0195 [Maricaulis ma...    35   3.4  

>ref|YP_001206824.1| putative methionyl-tRNA formyltransferase [Bradyrhizobium sp. ORS
          278]
 emb|CAL78607.1| conserved hypothetical protein; putative Methionyl-tRNA
          formyltransferase [Bradyrhizobium sp. ORS 278]
          Length = 241

 Score =  100 bits (248), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 1  MKTIILLTGVADQQFALTELLKAHNPALSFRCAVTADELAAIEPEVLREARLLAFTTSVI 60
          + TIILLTG  DQQ ALTELLKAHNPAL FRCAVT  EL AIE +VL  ARLLAFT+ V+
Sbjct: 2  LDTIILLTGSRDQQLALTELLKAHNPALRFRCAVTLQELEAIEIDVLAGARLLAFTSGVV 61

Query: 61 VPEHILATLGHAAXSMTVPAP 81
          VP  IL  LGH A +   P P
Sbjct: 62 VPPAILRALGHGAYNFH-PGP 81


>ref|YP_001239177.1| hypothetical protein BBta_3156 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35271.1| hypothetical protein BBta_3156 [Bradyrhizobium sp. BTAi1]
          Length = 241

 Score = 95.1 bits (235), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 59/81 (72%), Gaps = 1/81 (1%)

Query: 1  MKTIILLTGVADQQFALTELLKAHNPALSFRCAVTADELAAIEPEVLREARLLAFTTSVI 60
            TIILLTG  DQQ AL+ELL+AHNPAL+FR AV+  EL AIE +VL  +RL+AFTT VI
Sbjct: 2  FDTIILLTGSRDQQLALSELLRAHNPALAFRGAVSLPELEAIEQDVLGRSRLIAFTTGVI 61

Query: 61 VPEHILATLGHAAXSMTVPAP 81
          VP  ILA +GH A +   P P
Sbjct: 62 VPSEILAAVGHGAYNFH-PGP 81


>ref|NP_770330.1| hypothetical protein bll3690 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48955.1| bll3690 [Bradyrhizobium japonicum USDA 110]
          Length = 175

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 48/78 (61%)

Query: 1  MKTIILLTGVADQQFALTELLKAHNPALSFRCAVTADELAAIEPEVLREARLLAFTTSVI 60
          +KTIILLT    QQ  L  LL+  NP L+F  A++A +LAAI P++LR ARL++F   + 
Sbjct: 2  LKTIILLTQTVQQQRPLANLLREFNPDLAFCSALSALDLAAIAPDILRNARLVSFANDIP 61

Query: 61 VPEHILATLGHAAXSMTV 78
          V +  L  LGH A    V
Sbjct: 62 VSQKFLLRLGHGAYKFHV 79


>ref|YP_002952701.1| hypothetical protein DMR_13240 [Desulfovibrio magneticus RS-1]
 dbj|BAH74815.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 327

 Score = 42.0 bits (97), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)

Query: 3  TIILLTGVADQQFALTELLKAHNPALSFRCAVTADELAAIEPEVLREARLLAFTTSVIVP 62
          T++LLT   D   AL ++L AH   L  R  V    L A+ P +  +ARLL++ ++VIVP
Sbjct: 6  TLVLLT-ANDGAPALLQMLAAHGRDLELRHVVDLPGLRALLPTLGPKARLLSYLSNVIVP 64

Query: 63 EHILATLGHAAXSMTVPAPS 82
             LA  G  A ++   +P+
Sbjct: 65 ADCLAAFGLGAYNIHPGSPA 84


>ref|YP_755429.1| hypothetical protein Mmar10_0195 [Maricaulis maris MCS10]
 gb|ABI64491.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 230

 Score = 35.0 bits (79), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 2  KTIILLTGVADQ-QFALTELLKAHNPALSFRCAVTADELAAIEPEVLREA---RLLAFTT 57
          +++ILLT   ++  F +   L+  NPAL     V  D L ++  EV R +   RL+AF T
Sbjct: 7  RSVILLTNEQEKPHFEI--FLRRQNPALE---VVFCDTLESLSSEVDRRSGHVRLIAFLT 61

Query: 58 SVIVPEHILATL 69
           +IVP+ IL  L
Sbjct: 62 DLIVPKPILEQL 73