BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0124.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001239178.1| hypothetical protein BBta_3157 [Bradyrhizobi...    83   1e-14
ref|YP_001989739.1| hypothetical protein Rpal_0704 [Rhodopseudom...    82   2e-14
ref|NP_945990.1| hypothetical protein RPA0637 [Rhodopseudomonas ...    80   9e-14
ref|NP_770331.1| hypothetical protein bll3691 [Bradyrhizobium ja...    77   6e-13
ref|YP_001206823.1| hypothetical protein BRADO4894 [Bradyrhizobi...    74   7e-12

>ref|YP_001239178.1| hypothetical protein BBta_3157 [Bradyrhizobium sp. BTAi1]
 gb|ABQ35272.1| hypothetical protein BBta_3157 [Bradyrhizobium sp. BTAi1]
          Length = 444

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 62/92 (67%), Gaps = 7/92 (7%)

Query: 1   MIVIRSQAASNEAITVIMRDIAASDAREMAASIEAVT-------GAFGRLELALCPWQDD 53
           ++V+ S A S++A+TVI+R++    ARE A SI+AVT       G FGRLEL+LC WQ +
Sbjct: 336 LLVLCSGANSDKAVTVILREVDGRSARETADSIDAVTRAFVADCGGFGRLELSLCSWQPE 395

Query: 54  IRAAKSAAKSANHRIIEIAPWQTLPADLFRTV 85
            R A+ AA  A++ + E+ P Q LP +LFRT+
Sbjct: 396 ARIAREAAFLADNMVFEVVPGQHLPENLFRTI 427


>ref|YP_001989739.1| hypothetical protein Rpal_0704 [Rhodopseudomonas palustris TIE-1]
 gb|ACE99263.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 442

 Score = 82.4 bits (202), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 68/108 (62%), Gaps = 8/108 (7%)

Query: 1   MIVIRSQAASNEAITVIMRDIAASDAREMAASIEAVT-------GAFGRLELALCPWQDD 53
           ++V+ S  AS + + VI+RDIAA+D+R +A ++E  T       G FGRLEL LC W+D+
Sbjct: 336 LVVMTSHQASGDGVAVILRDIAAADSRLVATTVETTTSAFAADNGGFGRLELMLCAWRDE 395

Query: 54  IRAAKSAAKSANHRIIEIAPWQTLPADLFRTVGQSRDAGSVVVMAGQR 101
           +  A+ AA SA  R+ EI P Q +P D F  + + +DAG+  ++A  R
Sbjct: 396 VDFAREAAASARLRVAEIVPGQPIPHDFFARLDR-QDAGAPSLIAHGR 442


>ref|NP_945990.1| hypothetical protein RPA0637 [Rhodopseudomonas palustris CGA009]
 emb|CAE26081.1| hypothetical protein RPA0637 [Rhodopseudomonas palustris CGA009]
          Length = 442

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 67/108 (62%), Gaps = 8/108 (7%)

Query: 1   MIVIRSQAASNEAITVIMRDIAASDAREMAASIEAVT-------GAFGRLELALCPWQDD 53
           ++V+ S  AS + + VI+RDIA +D+R +A ++E  T       G FGRLEL LC W+D+
Sbjct: 336 LVVMTSHQASGDGVAVILRDIATADSRVVATTVETATSAFAADNGGFGRLELMLCAWRDE 395

Query: 54  IRAAKSAAKSANHRIIEIAPWQTLPADLFRTVGQSRDAGSVVVMAGQR 101
           +  A+ AA SA  R+ EI P Q +P D F  + + +DAG+  ++A  R
Sbjct: 396 VDFAREAAASARLRVAEIVPGQPIPHDFFARLDR-QDAGAPSLIARGR 442


>ref|NP_770331.1| hypothetical protein bll3691 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48956.1| bll3691 [Bradyrhizobium japonicum USDA 110]
          Length = 411

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 44/89 (49%), Positives = 64/89 (71%), Gaps = 7/89 (7%)

Query: 1   MIVIRSQAASNEAITVIMRDIAASDAREMAASIEAVTGAFG-------RLELALCPWQDD 53
            +V+ S+AA+   + VI+RDI A+DAR +AA++EAVTGAF        R EL+LC  +DD
Sbjct: 303 FMVMTSEAANENGVAVILRDIEANDARAVAATVEAVTGAFAADCGGYKRFELSLCALKDD 362

Query: 54  IRAAKSAAKSANHRIIEIAPWQTLPADLF 82
           + AA++AA+ A +RI+EIAP Q++P D F
Sbjct: 363 LGAAQAAAQQARYRILEIAPGQSIPRDFF 391


>ref|YP_001206823.1| hypothetical protein BRADO4894 [Bradyrhizobium sp. ORS 278]
 emb|CAL78606.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 442

 Score = 73.9 bits (180), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 59/92 (64%), Gaps = 8/92 (8%)

Query: 1   MIVIRSQAASNEAITVIMRDIAASDAREMAASIEAVT-------GAFGRLELALCPWQDD 53
           ++V+RS A  ++AI++I+RD    +AR+ AAS+EA+        G F RLE++LC WQ D
Sbjct: 335 LLVLRSDAPRDKAISIILRD-EGGNARDAAASVEALASAFTNDHGGFSRLEISLCAWQRD 393

Query: 54  IRAAKSAAKSANHRIIEIAPWQTLPADLFRTV 85
           +R A+ A + A H +I +A  Q L  DLFR +
Sbjct: 394 VRVAREAGRLAGHEVIVLASGQELQPDLFRAL 425