BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0121.p (233 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001206822.1| RNA polymerase sigma factor [Bradyrhizobium ... 369 e-100 ref|YP_001239179.1| RNA polymerase sigma factor [Bradyrhizobium ... 365 2e-99 ref|NP_945992.1| RNA polymerase sigma factor [Rhodopseudomonas p... 339 2e-91 ref|NP_770334.2| RNA polymerase sigma factor [Bradyrhizobium jap... 329 2e-88 dbj|BAC48959.1| blr3694 [Bradyrhizobium japonicum USDA 110] 317 1e-84 >ref|YP_001206822.1| RNA polymerase sigma factor [Bradyrhizobium sp. ORS 278] emb|CAL78605.1| Putative RNA polymerase ECF-type sigma factor [Bradyrhizobium sp. ORS 278] Length = 234 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 182/234 (77%), Positives = 199/234 (85%), Gaps = 1/234 (0%) Query: 1 MSYALDMRAPAEVEATPAAVAPAEAAAPWS-NVPTVADAGPLDTVEIHDEDKELLDRLAA 59 MSYALD+RAPA+ ++ +P PWS +V TV D P + DED ELLDRLA Sbjct: 1 MSYALDVRAPADGMSSSEPASPEIMTVPWSESVSTVPDGAPPSEDAVFDEDSELLDRLAT 60 Query: 60 GDETAFRALVERHVDRAYAIALRIVGNAADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWL 119 GDE AFR LVERH+DRAYAIALRIVG+AADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWL Sbjct: 61 GDEVAFRLLVERHIDRAYAIALRIVGSAADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWL 120 Query: 120 YRVVSNRCIDLRRKPRTENVDVVPEVADTQLDASAVIERNEIGNLLEVAMQRLPEQQRVA 179 YRVVSNRCIDLRRKPRTENVDVVPEV D + DA +VIER ++ +LLE AMQRLPEQQRVA Sbjct: 121 YRVVSNRCIDLRRKPRTENVDVVPEVPDGKPDAVSVIERAQMSDLLESAMQRLPEQQRVA 180 Query: 180 VILSYHENMSNSEIAEVMDTTVAAVESLLKRGRQQLREMLKRHERDLRGAFTDC 233 VILSYHENMSN EIAEVM+TTV AVESLLKRGRQQLREML+RHERD+RGAFTDC Sbjct: 181 VILSYHENMSNGEIAEVMETTVTAVESLLKRGRQQLREMLRRHERDIRGAFTDC 234 >ref|YP_001239179.1| RNA polymerase sigma factor [Bradyrhizobium sp. BTAi1] gb|ABQ35273.1| RNA polymerase, sigma subunit, ECF family [Bradyrhizobium sp. BTAi1] Length = 233 Score = 365 bits (938), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 184/234 (78%), Positives = 201/234 (85%), Gaps = 2/234 (0%) Query: 1 MSYALDMRAPAEVEATPAAVAPAEAAAPWS-NVPTVADAGPLDTVEIHDEDKELLDRLAA 59 M+YALD+ AP + A +P A PWS + TV D P V + DEDKELLDRLA Sbjct: 1 MNYALDVCAPTDGVPLNAPASPDVAEVPWSESASTVPDCSP-GQVAVFDEDKELLDRLAT 59 Query: 60 GDETAFRALVERHVDRAYAIALRIVGNAADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWL 119 GDETAFR LVERH+DRAYAIALRIVGNAADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWL Sbjct: 60 GDETAFRLLVERHIDRAYAIALRIVGNAADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWL 119 Query: 120 YRVVSNRCIDLRRKPRTENVDVVPEVADTQLDASAVIERNEIGNLLEVAMQRLPEQQRVA 179 YRVVSNRCIDLRRKPRTENVDVVPEVAD + DA++VIER E+ +LLE AM+RLPEQQRVA Sbjct: 120 YRVVSNRCIDLRRKPRTENVDVVPEVADGKPDAASVIERAEMSDLLEAAMRRLPEQQRVA 179 Query: 180 VILSYHENMSNSEIAEVMDTTVAAVESLLKRGRQQLREMLKRHERDLRGAFTDC 233 VILSYHENMSN EIAEVMDTTV+AVESLLKRGRQQLR+ML+RHERD+ GAFTDC Sbjct: 180 VILSYHENMSNGEIAEVMDTTVSAVESLLKRGRQQLRDMLRRHERDICGAFTDC 233 >ref|NP_945992.1| RNA polymerase sigma factor [Rhodopseudomonas palustris CGA009] ref|YP_001989741.1| RNA polymerase sigma factor [Rhodopseudomonas palustris TIE-1] emb|CAE26083.1| RNA polymerase ECF-type sigma factor [Rhodopseudomonas palustris CGA009] gb|ACE99265.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Rhodopseudomonas palustris TIE-1] Length = 232 Score = 339 bits (869), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 176/235 (74%), Positives = 195/235 (82%), Gaps = 7/235 (2%) Query: 1 MSYALDMRAPAEVEATPAAVAPAEAAAPWSNVP---TVADAGPLDTVEIHDEDKELLDRL 57 M+ ALD+ APAEV AA APA+ A S++P V D+ P+ + DED +LLDRL Sbjct: 1 MNGALDVLAPAEV--IVAATAPADNEA--SDMPPVEIVLDSPPVSAEMVFDEDADLLDRL 56 Query: 58 AAGDETAFRALVERHVDRAYAIALRIVGNAADAEDVVQDTMLKVWTHRGRWQHGRAKFST 117 A DE AFR LVERH+DRAY+IALRI+GN+ADAEDVVQDTMLKVWTHRGRWQHGRAKFST Sbjct: 57 ATDDEAAFRMLVERHIDRAYSIALRILGNSADAEDVVQDTMLKVWTHRGRWQHGRAKFST 116 Query: 118 WLYRVVSNRCIDLRRKPRTENVDVVPEVADTQLDASAVIERNEIGNLLEVAMQRLPEQQR 177 WLYRVVSNRCIDLRRKPRTENV+ VPEVADTQ DA VIERNE+ NLLE AMQRLPEQQR Sbjct: 117 WLYRVVSNRCIDLRRKPRTENVEAVPEVADTQPDAVRVIERNELSNLLEAAMQRLPEQQR 176 Query: 178 VAVILSYHENMSNSEIAEVMDTTVAAVESLLKRGRQQLREMLKRHERDLRGAFTD 232 +AVILSYHENMSN+EIAEVMDTT+AAVESLLKRGRQQLR L E +LR AFTD Sbjct: 177 IAVILSYHENMSNAEIAEVMDTTIAAVESLLKRGRQQLRARLSGDESELRAAFTD 231 >ref|NP_770334.2| RNA polymerase sigma factor [Bradyrhizobium japonicum USDA 110] Length = 232 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 175/234 (74%), Positives = 198/234 (84%), Gaps = 3/234 (1%) Query: 1 MSYALDMRAPAEVEATPAAVAPAEAAAPWSNVPTVA-DAGPLDTVEIHDEDKELLDRLAA 59 MS+A+D+ A AE E A +EA AP ++A D P+ + DED ELLDRLAA Sbjct: 1 MSFAVDVFARAEAEI--ATTITSEANAPVIASASIAPDGEPVAADVVFDEDSELLDRLAA 58 Query: 60 GDETAFRALVERHVDRAYAIALRIVGNAADAEDVVQDTMLKVWTHRGRWQHGRAKFSTWL 119 DETAFR LVERH+DRAYAIALRIVGNAADAEDVVQD+MLK+W+HRGRWQHGRAKFSTWL Sbjct: 59 DDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQDSMLKIWSHRGRWQHGRAKFSTWL 118 Query: 120 YRVVSNRCIDLRRKPRTENVDVVPEVADTQLDASAVIERNEIGNLLEVAMQRLPEQQRVA 179 YRV+SNRCIDLRRKPRTENVD VPEVAD + DAS VIERNE+ +LE AMQRLPEQQR+A Sbjct: 119 YRVISNRCIDLRRKPRTENVDTVPEVADGRPDASRVIERNELNGMLEEAMQRLPEQQRIA 178 Query: 180 VILSYHENMSNSEIAEVMDTTVAAVESLLKRGRQQLREMLKRHERDLRGAFTDC 233 VILSYHE+MSN EIAEVMD+TVAAVESLLKRGRQQLR++L+RHERD+R AFTDC Sbjct: 179 VILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQQLRQLLRRHERDIRTAFTDC 232 >dbj|BAC48959.1| blr3694 [Bradyrhizobium japonicum USDA 110] Length = 206 Score = 317 bits (812), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 161/197 (81%), Positives = 178/197 (90%) Query: 37 DAGPLDTVEIHDEDKELLDRLAAGDETAFRALVERHVDRAYAIALRIVGNAADAEDVVQD 96 D P+ + DED ELLDRLAA DETAFR LVERH+DRAYAIALRIVGNAADAEDVVQD Sbjct: 10 DGEPVAADVVFDEDSELLDRLAADDETAFRMLVERHIDRAYAIALRIVGNAADAEDVVQD 69 Query: 97 TMLKVWTHRGRWQHGRAKFSTWLYRVVSNRCIDLRRKPRTENVDVVPEVADTQLDASAVI 156 +MLK+W+HRGRWQHGRAKFSTWLYRV+SNRCIDLRRKPRTENVD VPEVAD + DAS VI Sbjct: 70 SMLKIWSHRGRWQHGRAKFSTWLYRVISNRCIDLRRKPRTENVDTVPEVADGRPDASRVI 129 Query: 157 ERNEIGNLLEVAMQRLPEQQRVAVILSYHENMSNSEIAEVMDTTVAAVESLLKRGRQQLR 216 ERNE+ +LE AMQRLPEQQR+AVILSYHE+MSN EIAEVMD+TVAAVESLLKRGRQQLR Sbjct: 130 ERNELNGMLEEAMQRLPEQQRIAVILSYHEDMSNGEIAEVMDSTVAAVESLLKRGRQQLR 189 Query: 217 EMLKRHERDLRGAFTDC 233 ++L+RHERD+R AFTDC Sbjct: 190 QLLRRHERDIRTAFTDC 206