BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0119.p (565 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001239181.1| putative flagellar hook-associated proteinFl... 798 0.0 ref|YP_001206820.1| putative flagellar hook-associated protein F... 763 0.0 ref|NP_945994.1| flagellar hook-associated protein 2 FliD [Rhodo... 744 0.0 ref|NP_770336.1| hypothetical protein blr3696 [Bradyrhizobium ja... 625 e-177 ref|YP_530756.1| flagellar hook-associated 2-like [Rhodopseudomo... 580 e-163 >ref|YP_001239181.1| putative flagellar hook-associated proteinFliD [Bradyrhizobium sp. BTAi1] gb|ABQ35275.1| Putative flagellar hook-associated protein 2 (HAP2, fliD protein) [Bradyrhizobium sp. BTAi1] Length = 572 Score = 798 bits (2060), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/533 (77%), Positives = 474/533 (88%) Query: 33 IDWDALIEAEVNAKLAAATSITTTITANQAKITAYQSLQTELSTLATGLSSLSTSIINSI 92 IDW ALI++ V+AKL AT I+T IT+N+AKITAYQ+LQT L TL++GLSSL+TS++NS+ Sbjct: 40 IDWTALIQSAVDAKLTQATQISTKITSNEAKITAYQTLQTALKTLSSGLSSLATSMVNSL 99 Query: 93 ATNAFATRAATISSTGDVSASSALNMSVNSGSATGDHTLQITQLATAQKVIGSSQSSSST 152 ATN FATRAATIS+TGDVSASSAL+MSVN+G+ATG HTL I+Q+ATA KV G++QSS +T Sbjct: 100 ATNVFATRAATISATGDVSASSALSMSVNNGAATGSHTLTISQIATAHKVAGTTQSSQTT 159 Query: 153 ALGLSGTFSLGLSGGTSTAISITSGMSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMVL 212 ALG SGTFSLGLSGGT+ I++TS MS+QD+VD +NAQTSTTNV+ASIVQVSSGSYE+VL Sbjct: 160 ALGYSGTFSLGLSGGTTADITVTSDMSLQDVVDAVNAQTSTTNVEASIVQVSSGSYELVL 219 Query: 213 TGTQDAADITYSSTSGDDILNRLGVTDTSGAFTDVLQKSQSAEFTLDGIALTRNTNDISD 272 TGT+DAADITYSS+SGDDILN+LGVTD+SGAF VLQ +Q+AEFTLDGI+LTRNTNDI+D Sbjct: 220 TGTEDAADITYSSSSGDDILNKLGVTDSSGAFATVLQTAQAAEFTLDGISLTRNTNDITD 279 Query: 273 VLSGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRDQVIAQSAQNSDGTA 332 VLSGVTFDLLQ TPSGT+LNISI TDTSQI+SALQTFVTNYNAFRD VIAQ NSDGTA Sbjct: 280 VLSGVTFDLLQATPSGTTLNISIGTDTSQISSALQTFVTNYNAFRDAVIAQQTTNSDGTA 339 Query: 333 ASSAVLFGDSTMRDIMTQLQQVLSGTVGGMTMADLGLSFNENNELQLDTGTLSTVLTQNL 392 ASSAVLFGD TMRDIM LQ VL +VGG+TMADLGLSFNE NEL+LDTGTLST+L+ NL Sbjct: 340 ASSAVLFGDGTMRDIMNTLQDVLGTSVGGLTMADLGLSFNEKNELELDTGTLSTILSTNL 399 Query: 393 AGVTQLLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDSTGMLTGASIGGDSSGFSVVGNT 452 +GVT LLSAQT TSSSQLSVVNTGTSPQSFTLDLTVDS+G LT AS+GGDSS F+V GNT Sbjct: 400 SGVTTLLSAQTKTSSSQLSVVNTGTSPQSFTLDLTVDSSGNLTAASVGGDSSLFTVSGNT 459 Query: 453 IIGNSGTIYAGMAFTYTGSTSQSITVTSSSGLATQLYQLAHTSSGTSGQLQTLITNLQSR 512 I+GNSGT YAGMAFTYTGSTSQSITVTS+ GLATQ+YQ A T+S T+G LQTLI NL SR Sbjct: 460 IVGNSGTAYAGMAFTYTGSTSQSITVTSTQGLATQIYQFAKTASSTTGSLQTLIDNLTSR 519 Query: 513 DTDLQSQVSDIQSNAATFKAQLQVQYANYQAAIESANNTLGYLKALLDASSSN 565 D LQ++V DI+S AAT++ QL QYA YQAAIESANNTL YLKALL+ASSSN Sbjct: 520 DETLQAKVDDIKSAAATYQTQLTAQYAKYQAAIESANNTLTYLKALLNASSSN 572 >ref|YP_001206820.1| putative flagellar hook-associated protein FlgD [Bradyrhizobium sp. ORS 278] emb|CAL78603.1| Putative flagellar hook-associated protein 2 (HAP2, fliD protein) [Bradyrhizobium sp. ORS 278] Length = 523 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/523 (76%), Positives = 465/523 (88%) Query: 43 VNAKLAAATSITTTITANQAKITAYQSLQTELSTLATGLSSLSTSIINSIATNAFATRAA 102 +NAKL+ AT I+T ITAN+AKITAYQ+LQT L TL++GLSSL+T+++NS+ATN FATRAA Sbjct: 1 MNAKLSQATQISTKITANEAKITAYQTLQTSLKTLSSGLSSLATAVVNSLATNVFATRAA 60 Query: 103 TISSTGDVSASSALNMSVNSGSATGDHTLQITQLATAQKVIGSSQSSSSTALGLSGTFSL 162 TIS+TGDVSASSAL+MSVN+G+ATG HTL I+Q+ATAQKV G++QSS +TALG SGTFSL Sbjct: 61 TISATGDVSASSALSMSVNNGAATGSHTLTISQIATAQKVTGTAQSSQTTALGYSGTFSL 120 Query: 163 GLSGGTSTAISITSGMSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMVLTGTQDAADIT 222 GLSGG++ ISITS M++QD+V INAQTSTT+V ASIVQVSSGSY++VLTGT+DAADIT Sbjct: 121 GLSGGSTADISITSDMTLQDVVSAINAQTSTTDVAASIVQVSSGSYQLVLTGTKDAADIT 180 Query: 223 YSSTSGDDILNRLGVTDTSGAFTDVLQKSQSAEFTLDGIALTRNTNDISDVLSGVTFDLL 282 YSS+SGDDILN+LGVTD SGAF+ VLQ +Q+A+FTLDGI+LTR+TNDI+DVLSGVTFDLL Sbjct: 181 YSSSSGDDILNKLGVTDGSGAFSTVLQTAQAAQFTLDGISLTRDTNDITDVLSGVTFDLL 240 Query: 283 QPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRDQVIAQSAQNSDGTAASSAVLFGDS 342 Q TPSGT+LNISI TDTSQI+SALQTFVTNYNAFRD V+ Q NSDGTA+SSAVLFGD Sbjct: 241 QATPSGTTLNISIGTDTSQISSALQTFVTNYNAFRDAVLTQQTTNSDGTASSSAVLFGDG 300 Query: 343 TMRDIMTQLQQVLSGTVGGMTMADLGLSFNENNELQLDTGTLSTVLTQNLAGVTQLLSAQ 402 TMR IM LQ VL +VGG+TMADLGLSFNE NEL+LDTGTLST+L+ NL+GVT LLSAQ Sbjct: 301 TMRQIMNSLQNVLGTSVGGLTMADLGLSFNEKNELELDTGTLSTILSTNLSGVTTLLSAQ 360 Query: 403 TTTSSSQLSVVNTGTSPQSFTLDLTVDSTGMLTGASIGGDSSGFSVVGNTIIGNSGTIYA 462 TTTSSSQLSVVNTGTSPQSFTLDLTVDS+G LT AS+GGDSS F++ GNTI+GNSGTIYA Sbjct: 361 TTTSSSQLSVVNTGTSPQSFTLDLTVDSSGSLTAASVGGDSSLFTITGNTIVGNSGTIYA 420 Query: 463 GMAFTYTGSTSQSITVTSSSGLATQLYQLAHTSSGTSGQLQTLITNLQSRDTDLQSQVSD 522 GMAFTYTG+TSQSITVTS+ GLATQ+YQ+A T+S +SG LQTLI NL ++D +QS+V D Sbjct: 421 GMAFTYTGTTSQSITVTSTQGLATQIYQIAKTASSSSGSLQTLIDNLTTQDDTMQSKVDD 480 Query: 523 IQSNAATFKAQLQVQYANYQAAIESANNTLGYLKALLDASSSN 565 I S AATF+ QL QYA YQAAIESANNTL YLKALL+ SSSN Sbjct: 481 INSAAATFQTQLTAQYAKYQAAIESANNTLTYLKALLNQSSSN 523 >ref|NP_945994.1| flagellar hook-associated protein 2 FliD [Rhodopseudomonas palustris CGA009] ref|YP_001989743.1| flagellar hook-associated 2 domain-containing protein [Rhodopseudomonas palustris TIE-1] emb|CAE26085.1| possible flagellar hook-associated protein 2 (FliD, filament cap protein) [Rhodopseudomonas palustris CGA009] gb|ACE99267.1| flagellar hook-associated 2 domain protein [Rhodopseudomonas palustris TIE-1] Length = 571 Score = 744 bits (1920), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/532 (72%), Positives = 476/532 (89%) Query: 34 DWDALIEAEVNAKLAAATSITTTITANQAKITAYQSLQTELSTLATGLSSLSTSIINSIA 93 DWD+LI + VNAKLAAATSI+T ITAN+AKI+AYQ+LQT+LS L++GLSSL+T+++NS+A Sbjct: 40 DWDSLIASAVNAKLAAATSISTKITANEAKISAYQTLQTDLSKLSSGLSSLATAVVNSLA 99 Query: 94 TNAFATRAATISSTGDVSASSALNMSVNSGSATGDHTLQITQLATAQKVIGSSQSSSSTA 153 TN FATRAAT+SSTGDVSASSAL+MSV++G+ATGDH L I+Q+AT+ KV+G++QSS + Sbjct: 100 TNVFATRAATLSSTGDVSASSALSMSVSNGAATGDHALTISQIATSHKVMGTTQSSQTED 159 Query: 154 LGLSGTFSLGLSGGTSTAISITSGMSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMVLT 213 LG SG FSLGL+GG + I +TS MS+QDIVD +NAQTSTTNV+ASIVQVSSG+YEMVLT Sbjct: 160 LGYSGVFSLGLAGGYTANIIVTSSMSLQDIVDAVNAQTSTTNVEASIVQVSSGAYEMVLT 219 Query: 214 GTQDAADITYSSTSGDDILNRLGVTDTSGAFTDVLQKSQSAEFTLDGIALTRNTNDISDV 273 GT+DAADITYSS+SG DILN LG TD+SGAF +VLQ +Q+A+F+LDGI++TR+TNDI+DV Sbjct: 220 GTKDAADITYSSSSGTDILNSLGFTDSSGAFANVLQTAQAAKFSLDGISMTRDTNDITDV 279 Query: 274 LSGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRDQVIAQSAQNSDGTAA 333 L+GVTF+LLQ TP+G+++NISI TDTSQI SAL TFVTNYN +RD+VIAQ A NSDGTA+ Sbjct: 280 LAGVTFNLLQATPTGSAINISIGTDTSQIQSALTTFVTNYNTYRDEVIAQQATNSDGTAS 339 Query: 334 SSAVLFGDSTMRDIMTQLQQVLSGTVGGMTMADLGLSFNENNELQLDTGTLSTVLTQNLA 393 SAVLFGD TMRDI T+L+ L+ TVGG++M+DLGLSFN+ NEL+LDT TLST+L+ NL+ Sbjct: 340 DSAVLFGDGTMRDITTRLEAALNTTVGGLSMSDLGLSFNDQNELELDTSTLSTILSTNLS 399 Query: 394 GVTQLLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDSTGMLTGASIGGDSSGFSVVGNTI 453 GVT+LLSAQTTTSSSQLSVVNTGTSPQSF+LDLTVDS+G L+ AS+GGDSS F++ GNTI Sbjct: 400 GVTKLLSAQTTTSSSQLSVVNTGTSPQSFSLDLTVDSSGTLSSASVGGDSSLFTISGNTI 459 Query: 454 IGNSGTIYAGMAFTYTGSTSQSITVTSSSGLATQLYQLAHTSSGTSGQLQTLITNLQSRD 513 IG SG+IYAGMAFTYTG+TSQSITVTS+SG+ATQ+YQ+A T+S ++G LQTLIT+LQSRD Sbjct: 460 IGASGSIYAGMAFTYTGTTSQSITVTSTSGIATQMYQIAKTASASTGSLQTLITSLQSRD 519 Query: 514 TDLQSQVSDIQSNAATFKAQLQVQYANYQAAIESANNTLGYLKALLDASSSN 565 ++LQ +V DI + AATFKAQLQ QYA YQAAI SA+NT+ YLKALL+ASSSN Sbjct: 520 SELQQRVDDITTAAATFKAQLQTQYAKYQAAIASADNTMTYLKALLNASSSN 571 >ref|NP_770336.1| hypothetical protein blr3696 [Bradyrhizobium japonicum USDA 110] dbj|BAC48961.1| blr3696 [Bradyrhizobium japonicum USDA 110] Length = 423 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 326/422 (77%), Positives = 375/422 (88%) Query: 142 VIGSSQSSSSTALGLSGTFSLGLSGGTSTAISITSGMSMQDIVDTINAQTSTTNVQASIV 201 ++G+SQSS + LG SGTFSLGL+GG+++ I++TS MS+QD+VD +NAQTSTTNVQASIV Sbjct: 1 MVGTSQSSQTAELGYSGTFSLGLAGGSTSDITVTSTMSLQDVVDAVNAQTSTTNVQASIV 60 Query: 202 QVSSGSYEMVLTGTQDAADITYSSTSGDDILNRLGVTDTSGAFTDVLQKSQSAEFTLDGI 261 QVSSGSYEMVLTGT DAADITYSSTSGDDIL++LGVTD+SGAFTDVLQ +QSAEFTLDGI Sbjct: 61 QVSSGSYEMVLTGTADAADITYSSTSGDDILSKLGVTDSSGAFTDVLQAAQSAEFTLDGI 120 Query: 262 ALTRNTNDISDVLSGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRDQVI 321 A+TR+TNDISDVL+GVTF+LLQ TP GTSLN+SIETDTSQI SAL+TFVTNYNAFRD+VI Sbjct: 121 AMTRDTNDISDVLTGVTFNLLQATPDGTSLNVSIETDTSQIQSALETFVTNYNAFRDEVI 180 Query: 322 AQSAQNSDGTAASSAVLFGDSTMRDIMTQLQQVLSGTVGGMTMADLGLSFNENNELQLDT 381 AQ A +DGTA+SSAVLFGD TMR+IM LQ L+ TV G+TMADLGLSFNENNEL+LDT Sbjct: 181 AQQATGTDGTASSSAVLFGDGTMRNIMDALQNSLNSTVRGLTMADLGLSFNENNELELDT 240 Query: 382 GTLSTVLTQNLAGVTQLLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDSTGMLTGASIGG 441 TLS VL+ NL+GVT+LLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDS G LT AS+GG Sbjct: 241 STLSDVLSTNLSGVTKLLSAQTTTSSSQLSVVNTGTSPQSFTLDLTVDSDGNLTSASVGG 300 Query: 442 DSSGFSVVGNTIIGNSGTIYAGMAFTYTGSTSQSITVTSSSGLATQLYQLAHTSSGTSGQ 501 DSS F+V G +IIG SG+IYAGMAFTY+GSTSQSITVTS+SGLATQLYQLA S +SG Sbjct: 301 DSSLFTVSGTSIIGASGSIYAGMAFTYSGSTSQSITVTSTSGLATQLYQLAKNYSSSSGA 360 Query: 502 LQTLITNLQSRDTDLQSQVSDIQSNAATFKAQLQVQYANYQAAIESANNTLGYLKALLDA 561 LQTLITNL +RD DLQ +V DI S A+T ++QLQ QYA YQAAIES+N+TL YLKALL++ Sbjct: 361 LQTLITNLTTRDDDLQQKVDDINSAASTLQSQLQTQYAKYQAAIESSNSTLTYLKALLNS 420 Query: 562 SS 563 SS Sbjct: 421 SS 422 >ref|YP_530756.1| flagellar hook-associated 2-like [Rhodopseudomonas palustris BisB18] gb|ABD86437.1| flagellar hook-associated 2-like [Rhodopseudomonas palustris BisB18] Length = 568 Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust. Identities = 318/534 (59%), Positives = 413/534 (77%), Gaps = 2/534 (0%) Query: 32 SIDWDALIEAEVNAKLAAATSITTTITANQAKITAYQSLQTELSTLATGLSSLSTSIINS 91 SIDWDALIEA+V AK A ATSI T ITAN+ KI AYQ LQ+ LS +AT SLS+SIINS Sbjct: 34 SIDWDALIEAQVAAKTAQATSIETKITANETKIAAYQDLQSLLSDVATSAKSLSSSIINS 93 Query: 92 IATNAFATRAATISSTGDVSASSALNMSVNSGSATGDHTLQITQLATAQKVIGSSQSSSS 151 ++ + FATRAATI+STGDVSASSAL+MS++ +ATGDHTL I+Q+ATA V+G++ + + Sbjct: 94 LSGSVFATRAATITSTGDVSASSALSMSISDAAATGDHTLTISQIATAHSVVGAAVADKT 153 Query: 152 TALGLSGTFSLGLSGGTSTAISITSGMSMQDIVDTINAQTSTTNVQASIVQVSSGSYEMV 211 LG +GTFS+G+SGGT+ I ++S MS++DIV +INAQTSTT VQASI+Q+SS YEMV Sbjct: 154 AELGYAGTFSIGVSGGTTADIEVSSDMSLEDIVSSINAQTSTTKVQASIIQISSTEYEMV 213 Query: 212 LTGTQDAADITYSSTSGDDILNRLGVTDTSGAFTDVLQKSQSAEFTLDGIALTRNTNDIS 271 LT T D ADI ++ +GDD++N LGVTD+SG FTDVLQ +Q+A FTLDGI LTR++NDIS Sbjct: 214 LTATVDNADIVTANVTGDDVMNGLGVTDSSGDFTDVLQTAQAAIFTLDGIQLTRDSNDIS 273 Query: 272 DVLSGVTFDLLQPTPSGTSLNISIETDTSQITSALQTFVTNYNAFRDQVIAQSAQNSDGT 331 DVL+GV+F LLQ TP+G+S++ +ETD I A+ VT YNAFRD V +Q + S GT Sbjct: 274 DVLTGVSFSLLQTTPTGSSISFDVETDADTIVDAIDGLVTAYNAFRDYVYSQQSLTSSGT 333 Query: 332 AASSAVLFGDSTMRDIMTQLQQVLSGTVGGMTMADLGLSFNENNELQLDTGTLSTVLTQN 391 A AVLFGDSTMRDIM+Q+ L+ ++GG+++ADLGL+F+E N+L+ D+ L T L+ + Sbjct: 334 ADEDAVLFGDSTMRDIMSQVTAALNTSIGGLSIADLGLTFDETNDLEFDSSVLETTLSSD 393 Query: 392 LAGVTQLLSAQTTTSSSQLSVVNT-GTSPQSFTLDLTVDSTGMLTGASIGGDSSGFSVVG 450 L GV LL+ TSSS LSV+NT G+ P SFTLDL VD++G LT AS+ GDSS F++ G Sbjct: 394 LDGVIDLLATTVETSSSSLSVINTSGSPPASFTLDLVVDASGNLTSASVDGDSSLFTING 453 Query: 451 NTIIGNSGTIYAGMAFTYTGSTSQSITVTSSSGLATQLYQLAHTSSGTS-GQLQTLITNL 509 +TI+G SG+IY+GMAF Y GSTSQSITVTS+SG+A Q+Y LA + S TS G LQ LI NL Sbjct: 454 DTIVGASGSIYSGMAFNYRGSTSQSITVTSTSGIAAQIYSLAKSVSNTSTGSLQVLIDNL 513 Query: 510 QSRDTDLQSQVSDIQSNAATFKAQLQVQYANYQAAIESANNTLGYLKALLDASS 563 S+D LQ + + S AAT++A L+++YANYQ+AI+SAN+ L YL ALL++ S Sbjct: 514 TSQDDTLQQKADTVTSAAATYEANLKLRYANYQSAIQSANSMLDYLTALLNSDS 567