BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0118.p         (147 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_770337.1| hypothetical protein blr3697 [Bradyrhizobium ja...   182   1e-44
ref|NP_945995.1| hypothetical protein RPA0642 [Rhodopseudomonas ...   180   7e-44
ref|YP_001206819.1| putative flagellar protein fliS [Bradyrhizob...   176   9e-43
ref|YP_001239182.1| putative flagellar protein fliS [Bradyrhizob...   171   3e-41
ref|YP_779716.1| flagellar protein FliS [Rhodopseudomonas palust...   169   1e-40

>ref|NP_770337.1| hypothetical protein blr3697 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48962.1| blr3697 [Bradyrhizobium japonicum USDA 110]
          Length = 140

 Score =  182 bits (463), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/136 (67%), Positives = 107/136 (78%), Gaps = 2/136 (1%)

Query: 1   MTQNATAYHANNAYRSAAVAVPPLKAVVMLCDGAITLLQKALEAHEAKRFEEGHIYLTRA 60
           M  N  AY AN AYR AA  VPPLKAV ML  GA T LQKAL A E++RFEEGH +L +A
Sbjct: 2   MMHNQMAYLANQAYRGAATTVPPLKAVSMLLGGAATFLQKALVAQESRRFEEGHEHLMKA 61

Query: 61  TAILRGLSHNLDFTRGGAMADRLYRTYNALIMACLRSYGRPQARENFRRIIASLAELRDA 120
           TAILRGLSHNLDFT G  +A+RLY+TYNALI+A LR+YGRP ARE+FRRIIA LAE+R+A
Sbjct: 62  TAILRGLSHNLDFTNGRDVAERLYQTYNALILASLRAYGRPDARESFRRIIAGLAEMREA 121

Query: 121 WKFVEATA--GKAAKA 134
           W+FV+A +  GKA  A
Sbjct: 122 WEFVDAASRGGKADSA 137


>ref|NP_945995.1| hypothetical protein RPA0642 [Rhodopseudomonas palustris CGA009]
 ref|YP_001989744.1| flagellar protein FliS [Rhodopseudomonas palustris TIE-1]
 emb|CAE26086.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gb|ACE99268.1| putative flagellar protein FliS [Rhodopseudomonas palustris TIE-1]
          Length = 130

 Score =  180 bits (456), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/127 (68%), Positives = 104/127 (81%)

Query: 1   MTQNATAYHANNAYRSAAVAVPPLKAVVMLCDGAITLLQKALEAHEAKRFEEGHIYLTRA 60
           MTQ+A A+ AN AYR  AV VPPLKAVVML  GA+TLL +A+EA EA+RFE GH  + RA
Sbjct: 1   MTQHAMAHRANQAYRGTAVTVPPLKAVVMLHGGAMTLLHQAIEAQEARRFEHGHDCVVRA 60

Query: 61  TAILRGLSHNLDFTRGGAMADRLYRTYNALIMACLRSYGRPQARENFRRIIASLAELRDA 120
           TAILRGLSH+LD +RGGA+A+RLY TYNAL++A LRSYGRP A  N RRIIAS+AELR+A
Sbjct: 61  TAILRGLSHHLDCSRGGAVAERLYETYNALVLAALRSYGRPHAEANLRRIIASIAELREA 120

Query: 121 WKFVEAT 127
           W++V  T
Sbjct: 121 WEYVAVT 127


>ref|YP_001206819.1| putative flagellar protein fliS [Bradyrhizobium sp. ORS 278]
 emb|CAL78602.1| Putative Flagellar protein fliS [Bradyrhizobium sp. ORS 278]
          Length = 141

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 88/133 (66%), Positives = 110/133 (82%), Gaps = 1/133 (0%)

Query: 1   MTQNATAYHANNAYRSAAVAVPPLKAVVMLCDGAITLLQKALEAHEAKRFEEGHIYLTRA 60
           MTQ++ A  A+ AYR AAVAVPPL+AV+ML +GA+T LQK L+A EA+RFEE H +LT+A
Sbjct: 1   MTQSSMAQLASQAYRGAAVAVPPLRAVIMLLNGAVTCLQKCLQAQEARRFEEAHAHLTKA 60

Query: 61  TAILRGLSHNLDFTRGGAMADRLYRTYNALIMACLRSYGRPQARENFRRIIASLAELRDA 120
           TAILRGLS +LD  RGGA+AD L+ TYNALIMA LR+YGRP+ RENF+RII SL ELR A
Sbjct: 61  TAILRGLSLHLDPVRGGAVADGLFSTYNALIMAVLRAYGRPRMRENFQRIIESLLELRSA 120

Query: 121 WKFVEATAGKAAK 133
           W+ V+A AG++A+
Sbjct: 121 WETVDA-AGRSAR 132


>ref|YP_001239182.1| putative flagellar protein fliS [Bradyrhizobium sp. BTAi1]
 gb|ABQ35276.1| Putative Flagellar protein fliS [Bradyrhizobium sp. BTAi1]
          Length = 141

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 83/134 (61%), Positives = 106/134 (79%)

Query: 1   MTQNATAYHANNAYRSAAVAVPPLKAVVMLCDGAITLLQKALEAHEAKRFEEGHIYLTRA 60
           MTQN  A+ A  AYR AAV VPP++AV+ML +G +T LQK L+A EA+RFEEGH +LTRA
Sbjct: 1   MTQNPMAHLATQAYRGAAVTVPPVRAVIMLLNGTVTYLQKCLQAQEARRFEEGHAHLTRA 60

Query: 61  TAILRGLSHNLDFTRGGAMADRLYRTYNALIMACLRSYGRPQARENFRRIIASLAELRDA 120
           TAILRGLS +LD TRGGA+A+RL+ TYNALI+A LR+YGRP  RENF RI+A + ELR++
Sbjct: 61  TAILRGLSLHLDPTRGGAVAERLFETYNALIVAALRAYGRPGMRENFLRIMAGVTELRES 120

Query: 121 WKFVEATAGKAAKA 134
           W+ V+  A   ++A
Sbjct: 121 WEAVDVRARVGSRA 134


>ref|YP_779716.1| flagellar protein FliS [Rhodopseudomonas palustris BisA53]
 gb|ABJ04736.1| flagellar protein FliS [Rhodopseudomonas palustris BisA53]
          Length = 134

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/126 (66%), Positives = 101/126 (80%)

Query: 5   ATAYHANNAYRSAAVAVPPLKAVVMLCDGAITLLQKALEAHEAKRFEEGHIYLTRATAIL 64
           +T   A  AYR+A+VAVPPL+A+VML DGAI  L+K ++A EA+RFEE H +L RATAIL
Sbjct: 4   STNQFAAQAYRTASVAVPPLQAMVMLFDGAILSLRKTVQAAEARRFEESHNHLLRATAIL 63

Query: 65  RGLSHNLDFTRGGAMADRLYRTYNALIMACLRSYGRPQARENFRRIIASLAELRDAWKFV 124
           RGLSHNLDF+RGGA+A+RLY+TY+ALIMAC  SYGRP A   + RIIASL ELRDAWK V
Sbjct: 64  RGLSHNLDFSRGGALAERLYQTYHALIMACHSSYGRPDAAARYDRIIASLGELRDAWKHV 123

Query: 125 EATAGK 130
            A  G+
Sbjct: 124 AAITGR 129