BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0116.p (256 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudom... 297 9e-79 ref|NP_945997.1| basal-body rod modification protein flgD [Rhodo... 295 3e-78 ref|YP_001239184.1| putative basal-body rod modification protein... 278 8e-73 ref|YP_001206816.1| putative basal-body rod modification protein... 276 2e-72 ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomona... 217 1e-54 >ref|YP_001989746.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] gb|ACE99270.1| flagellar hook capping protein [Rhodopseudomonas palustris TIE-1] Length = 222 Score = 297 bits (761), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 147/191 (76%), Positives = 174/191 (91%) Query: 66 DFLNLLVSELQNQDPLNATSTTDFINQLTSYANFTEQQSTNASMTSLASSFSSLVTLNSV 125 DFL+LL+SELQNQDPLNATSTTDFINQLTSYANF++QQ N+SMTSLA+SFSSLVTLNSV Sbjct: 32 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 91 Query: 126 NYIGHTVEARTNTAELTNGSATFGYSLTSAASNVAITIQDSSGNTVWSGKGTGTAGSNTF 185 NYIGHTVEA+T+TA LT GSATFGY+L++AAS+V+I+I+DSSGNTVWSG G+G AGSN+ Sbjct: 92 NYIGHTVEAKTDTATLTGGSATFGYTLSAAASDVSISIKDSSGNTVWSGTGSGNAGSNSL 151 Query: 186 TWNGQTSDGTQLKDGGQYMIQVTATDSAGNSLLSYTTMTGTVTGIDASGSTPSLLVNGVP 245 TW+G+ S GTQL DGGQY I V+ATDSAGNS+ Y+T++GTVTGID S STP+LLVNGV Sbjct: 152 TWDGKNSSGTQLADGGQYTISVSATDSAGNSVYKYSTVSGTVTGIDTSSSTPALLVNGVS 211 Query: 246 VSAANIIGVTS 256 VSA+NIIGV+S Sbjct: 212 VSASNIIGVSS 222 >ref|NP_945997.1| basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] emb|CAE26088.1| possible basal-body rod modification protein flgD [Rhodopseudomonas palustris CGA009] Length = 265 Score = 295 bits (756), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 147/191 (76%), Positives = 174/191 (91%) Query: 66 DFLNLLVSELQNQDPLNATSTTDFINQLTSYANFTEQQSTNASMTSLASSFSSLVTLNSV 125 DFL+LL+SELQNQDPLNATSTTDFINQLTSYANF++QQ N+SMTSLA+SFSSLVTLNSV Sbjct: 75 DFLSLLISELQNQDPLNATSTTDFINQLTSYANFSQQQEINSSMTSLANSFSSLVTLNSV 134 Query: 126 NYIGHTVEARTNTAELTNGSATFGYSLTSAASNVAITIQDSSGNTVWSGKGTGTAGSNTF 185 NYIGHTVEA+T+TA LT GSATFGY+L++AAS+V+I+I+DSSGNTVWSG G+G AGSN+ Sbjct: 135 NYIGHTVEAKTDTATLTGGSATFGYTLSAAASDVSISIKDSSGNTVWSGTGSGNAGSNSL 194 Query: 186 TWNGQTSDGTQLKDGGQYMIQVTATDSAGNSLLSYTTMTGTVTGIDASGSTPSLLVNGVP 245 TW+G+ S GTQL DGGQY I V+ATDSAGNS+ Y+T++GTVTGID S STP+LLVNGV Sbjct: 195 TWDGKNSSGTQLADGGQYTISVSATDSAGNSVYKYSTVSGTVTGIDTSSSTPALLVNGVS 254 Query: 246 VSAANIIGVTS 256 VSA+NIIGV+S Sbjct: 255 VSASNIIGVSS 265 >ref|YP_001239184.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. BTAi1] gb|ABQ35278.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. BTAi1] Length = 221 Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust. Identities = 151/191 (79%), Positives = 169/191 (88%) Query: 66 DFLNLLVSELQNQDPLNATSTTDFINQLTSYANFTEQQSTNASMTSLASSFSSLVTLNSV 125 DFL LLVSELQNQDPLNATS TDF+NQ+TSYAN+T QQS N SM SLASSFSSLVTLNSV Sbjct: 31 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 90 Query: 126 NYIGHTVEARTNTAELTNGSATFGYSLTSAASNVAITIQDSSGNTVWSGKGTGTAGSNTF 185 NYIGHTVEA+T+TA L+NGSATFGYSL+SAASNV+I+I+DSSGNTVW+G GTG G+N+ Sbjct: 91 NYIGHTVEAKTDTAVLSNGSATFGYSLSSAASNVSISIKDSSGNTVWTGTGTGNKGANSI 150 Query: 186 TWNGQTSDGTQLKDGGQYMIQVTATDSAGNSLLSYTTMTGTVTGIDASGSTPSLLVNGVP 245 TW+G S G QL DGGQY I VTATDSAGNS+L+YTT+TGTVTGID S STPSL V GVP Sbjct: 151 TWDGTDSQGNQLSDGGQYTISVTATDSAGNSVLNYTTITGTVTGIDTSTSTPSLTVGGVP 210 Query: 246 VSAANIIGVTS 256 VSA+NIIGVTS Sbjct: 211 VSASNIIGVTS 221 >ref|YP_001206816.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. ORS 278] emb|CAL78599.1| putative basal-body rod modification protein flgD [Bradyrhizobium sp. ORS 278] Length = 218 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 149/191 (78%), Positives = 170/191 (89%) Query: 66 DFLNLLVSELQNQDPLNATSTTDFINQLTSYANFTEQQSTNASMTSLASSFSSLVTLNSV 125 DFL LLVSELQNQDPLNATS TDF+NQ+TSYAN+T QQS N SM SLASSFSSLVTLNSV Sbjct: 28 DFLQLLVSELQNQDPLNATSVTDFVNQMTSYANYTSQQSLNTSMNSLASSFSSLVTLNSV 87 Query: 126 NYIGHTVEARTNTAELTNGSATFGYSLTSAASNVAITIQDSSGNTVWSGKGTGTAGSNTF 185 NYIGHTVEA+++TA L+NGSATFGYSL+SAASNV+I+I+DSSG+TVW+G GTG GSN+ Sbjct: 88 NYIGHTVEAKSDTALLSNGSATFGYSLSSAASNVSISIKDSSGSTVWTGTGTGNKGSNSI 147 Query: 186 TWNGQTSDGTQLKDGGQYMIQVTATDSAGNSLLSYTTMTGTVTGIDASGSTPSLLVNGVP 245 TW+G+ S G QL DGGQY I VTATDS+GNS+L+YTT+TGTVTGID S STPSL VNGV Sbjct: 148 TWDGKDSGGNQLSDGGQYTISVTATDSSGNSVLNYTTVTGTVTGIDTSTSTPSLTVNGVA 207 Query: 246 VSAANIIGVTS 256 VSA+NIIGVTS Sbjct: 208 VSASNIIGVTS 218 >ref|YP_779714.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] gb|ABJ04734.1| flagellar hook capping protein [Rhodopseudomonas palustris BisA53] Length = 221 Score = 217 bits (553), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 114/191 (59%), Positives = 155/191 (81%) Query: 66 DFLNLLVSELQNQDPLNATSTTDFINQLTSYANFTEQQSTNASMTSLASSFSSLVTLNSV 125 DFL LLV+ELQNQ+PL+ TSTTDF +QL SYA+F +Q + N++++SL++SF+SL+TLNS Sbjct: 31 DFLTLLVAELQNQNPLDPTSTTDFTSQLMSYASFEQQTALNSNLSSLSTSFNSLLTLNSS 90 Query: 126 NYIGHTVEARTNTAELTNGSATFGYSLTSAASNVAITIQDSSGNTVWSGKGTGTAGSNTF 185 NYIG TV A+ ++A L NGS +FGYSL SAA NV +T+ DSSGNTVW+G GT TAGSN+F Sbjct: 91 NYIGQTVTAKADSATLENGSISFGYSLNSAAKNVTLTVSDSSGNTVWTGSGTTTAGSNSF 150 Query: 186 TWNGQTSDGTQLKDGGQYMIQVTATDSAGNSLLSYTTMTGTVTGIDASGSTPSLLVNGVP 245 TW+G T++GTQL DGG Y + VTATDS+G+S+ YTT++GTVTG+D+S T L + Sbjct: 151 TWDGTTTNGTQLSDGGSYSLSVTATDSSGSSVYGYTTVSGTVTGVDSSSGTTMLKIGSTS 210 Query: 246 VSAANIIGVTS 256 ++A++++GVTS Sbjct: 211 LAASSVVGVTS 221