BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0103.p         (160 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772844.1| hypothetical protein bsl6204 [Bradyrhizobium ja...   134   5e-30
ref|ZP_05081177.1| chlorocatechol 1,2-dioxygenase [Rhodobacteral...   133   1e-29
ref|YP_001207369.1| hypothetical protein BRADO5476 [Bradyrhizobi...   129   1e-28
ref|YP_001241804.1| hypothetical protein BBta_5959 [Bradyrhizobi...   125   2e-27
ref|ZP_01058075.1| dioxygenase [Roseobacter sp. MED193] >gi|8582...   122   3e-26

>ref|NP_772844.1| hypothetical protein bsl6204 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51469.1| bsl6204 [Bradyrhizobium japonicum USDA 110]
          Length = 69

 Score =  134 bits (336), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 65/69 (94%)

Query: 1  MNPIDLIVTVCAVLSPATCEEQHLVFNWNGSLQQCVMAAPPYIAQWVGEHPKWTAVRWRC 60
          MNPIDL+VTVCAVLSPATCEEQHLVFN+ GS +QC MAAPPYIAQWVG+HPKW AVRWRC
Sbjct: 1  MNPIDLVVTVCAVLSPATCEEQHLVFNYAGSPRQCAMAAPPYIAQWVGDHPKWQAVRWRC 60

Query: 61 EYPHSNDRA 69
          EYPH+ND+A
Sbjct: 61 EYPHANDKA 69


>ref|ZP_05081177.1| chlorocatechol 1,2-dioxygenase [Rhodobacterales bacterium Y4I]
 gb|EDZ44693.1| chlorocatechol 1,2-dioxygenase [Rhodobacterales bacterium Y4I]
          Length = 289

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/125 (57%), Positives = 84/125 (67%), Gaps = 6/125 (4%)

Query: 29  NGSLQQCVMAAPPYIAQ---WVGEHPKWTAVRWRCE-YPHSNDRAGAGGELLKYMGHHPW 84
           NG  +Q     P Y  +     G    +  V  R E YP   D  GA GELL YMGHHP 
Sbjct: 156 NGLYEQQDPDQPDYNLRGRFLTGADGSYDFVGLRPEPYPIPYD--GAAGELLNYMGHHPM 213

Query: 85  RPGHIHFMLSKDGYQSLISQIYDSETKYLDNDSVFAVKQSLIGKFAKAPAGADTDLVLNF 144
           RPGHIHFM++K GY+ LISQIYDSET+YLDND+VFAVK+SLIG    AP GA TDLV++F
Sbjct: 214 RPGHIHFMITKPGYKPLISQIYDSETEYLDNDAVFAVKESLIGDMKPAPDGAGTDLVMDF 273

Query: 145 DFKLK 149
           DF+LK
Sbjct: 274 DFRLK 278


>ref|YP_001207369.1| hypothetical protein BRADO5476 [Bradyrhizobium sp. ORS 278]
 emb|CAL79152.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 70

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 59/70 (84%), Positives = 64/70 (91%), Gaps = 1/70 (1%)

Query: 1  MNPIDLIVTVCAVLSPATCEEQHLVFNWNG-SLQQCVMAAPPYIAQWVGEHPKWTAVRWR 59
          M+PIDL++TVCAVLSPATCEEQHLVF   G SLQQC M APPYIAQW+GEHPKWTAVRWR
Sbjct: 1  MSPIDLVITVCAVLSPATCEEQHLVFADGGASLQQCAMKAPPYIAQWIGEHPKWTAVRWR 60

Query: 60 CEYPHSNDRA 69
          CEYPHSND+A
Sbjct: 61 CEYPHSNDKA 70


>ref|YP_001241804.1| hypothetical protein BBta_5959 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37898.1| hypothetical protein BBta_5959 [Bradyrhizobium sp. BTAi1]
          Length = 70

 Score =  125 bits (314), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/70 (81%), Positives = 62/70 (88%), Gaps = 1/70 (1%)

Query: 1  MNPIDLIVTVCAVLSPATCEEQHLVFNWNG-SLQQCVMAAPPYIAQWVGEHPKWTAVRWR 59
          M+PIDL++TVCAVLSP TCEEQHL F   G SLQQC M APPYIAQW+GEHPKWTAVRWR
Sbjct: 1  MSPIDLVITVCAVLSPTTCEEQHLHFADGGASLQQCAMKAPPYIAQWIGEHPKWTAVRWR 60

Query: 60 CEYPHSNDRA 69
          CEYPHSND+A
Sbjct: 61 CEYPHSNDKA 70


>ref|ZP_01058075.1| dioxygenase [Roseobacter sp. MED193]
 gb|EAQ43897.1| dioxygenase [Roseobacter sp. MED193]
          Length = 291

 Score =  122 bits (305), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/111 (56%), Positives = 78/111 (70%), Gaps = 3/111 (2%)

Query: 50  HPKWTAVRWRCEYPHSNDRAGAGGELLKYMGHHPWRPGHIHFMLSKDGYQSLISQIYDSE 109
           H  + AVR    YP  +D     GELL++MGHHP RPGH+HF++SKDGY+ LISQIYD++
Sbjct: 184 HYAFVAVR-PVPYPIPDDETA--GELLRFMGHHPNRPGHMHFIISKDGYRPLISQIYDAD 240

Query: 110 TKYLDNDSVFAVKQSLIGKFAKAPAGADTDLVLNFDFKLKKAAVERLVAAE 160
           + +LD DSVFAVK+SLIGKF  A     TDL   FDF LK+   E+ VAAE
Sbjct: 241 SAWLDEDSVFAVKESLIGKFKPADKDLGTDLHFEFDFVLKEGVSEQAVAAE 291