BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0096.p         (48 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001205673.1| putative DNA binding cold shock protein, Csp...    71   5e-11
ref|YP_001240010.1| cold-shock DNA-binding protein family protei...    71   5e-11
ref|ZP_08629942.1| cold shock protein CspB [Bradyrhizobiaceae ba...    70   1e-10
ref|YP_569661.1| cold-shock DNA-binding domain-containing protei...    68   4e-10
ref|YP_577398.1| cold-shock DNA-binding domain-containing protei...    68   5e-10

>ref|YP_001205673.1| putative DNA binding cold shock protein, CspA-like [Bradyrhizobium
           sp. ORS 278]
 emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium
           sp. ORS 278]
          Length = 217

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query: 12  TELRPGQYVLVRFGPGSKGMMAAEIHPETGPSALSSH 48
           TELRPGQ+VLVR+GPGSKGMMAAEIHPETG  ALSSH
Sbjct: 181 TELRPGQWVLVRYGPGSKGMMAAEIHPETGSPALSSH 217


>ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 217

 Score = 71.2 bits (173), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 35/37 (94%)

Query: 12  TELRPGQYVLVRFGPGSKGMMAAEIHPETGPSALSSH 48
           TELRPGQ+VLVR+GPGSKGMMAAEIHPETG  ALSSH
Sbjct: 181 TELRPGQWVLVRYGPGSKGMMAAEIHPETGSPALSSH 217


>ref|ZP_08629942.1| cold shock protein CspB [Bradyrhizobiaceae bacterium SG-6C]
 gb|EGP07311.1| cold shock protein CspB [Bradyrhizobiaceae bacterium SG-6C]
          Length = 220

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/37 (89%), Positives = 33/37 (89%)

Query: 12  TELRPGQYVLVRFGPGSKGMMAAEIHPETGPSALSSH 48
           TELRPGQYVLVRFGPGSKGMMAAEI PETG   LSSH
Sbjct: 184 TELRPGQYVLVRFGPGSKGMMAAEIQPETGAPGLSSH 220


>ref|YP_569661.1| cold-shock DNA-binding domain-containing protein [Rhodopseudomonas
           palustris BisB5]
 gb|ABE39760.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
           BisB5]
          Length = 219

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 33/37 (89%)

Query: 12  TELRPGQYVLVRFGPGSKGMMAAEIHPETGPSALSSH 48
           TELRPGQYVLVRFGPGSKGMMAAEI PE+G   LSSH
Sbjct: 183 TELRPGQYVLVRFGPGSKGMMAAEIQPESGAPGLSSH 219


>ref|YP_577398.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
           hamburgensis X14]
 gb|ABE62938.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
           X14]
          Length = 217

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 33/37 (89%)

Query: 12  TELRPGQYVLVRFGPGSKGMMAAEIHPETGPSALSSH 48
           TELRPGQ+VLVRFGPGSKGMMAAEI PETG   LSSH
Sbjct: 181 TELRPGQFVLVRFGPGSKGMMAAEIQPETGAPGLSSH 217