BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0095.p (146 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001240010.1| cold-shock DNA-binding protein family protei... 246 6e-64 ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum US... 246 8e-64 ref|YP_001205673.1| putative DNA binding cold shock protein, Csp... 244 4e-63 ref|ZP_07027008.1| cold-shock DNA-binding domain protein [Afipia... 239 8e-62 ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter ... 239 9e-62 >ref|YP_001240010.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp. BTAi1] gb|ABQ36104.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1] Length = 217 Score = 246 bits (629), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 119/139 (85%), Positives = 126/139 (90%), Gaps = 3/139 (2%) Query: 7 SRIGQGEYGSAPRDPAIDAFSGLGDTAANLVEVSGIIKWFDASKGYGFIVPDNGWPDILL 66 +R+G G RD AIDA +GLG+ NLVE+SG+IKWFDASKGYGFIVPDNGWPD+LL Sbjct: 22 NRLGADYQGGVARDAAIDALAGLGE---NLVEISGVIKWFDASKGYGFIVPDNGWPDVLL 78 Query: 67 HVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHVTVTA 126 HVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHVTVT Sbjct: 79 HVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHVTVTP 138 Query: 127 TSGLERAQVKWFNRLRGFG 145 TSGLERAQVKWFNRLRGFG Sbjct: 139 TSGLERAQVKWFNRLRGFG 157 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/68 (33%), Positives = 34/68 (50%) Query: 43 IKWFDASKGYGFIVPDNGWPDILLHVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIV 102 +KWF+ +G+GF+ G PDI +H+ LRR G G ++V +KG A I Sbjct: 147 VKWFNRLRGFGFVTCGEGTPDIFVHMETLRRFGMTELRPGQWVLVRYGPGSKGMMAAEIH 206 Query: 103 SMDESTAI 110 S A+ Sbjct: 207 PETGSPAL 214 >ref|NP_771050.1| cold shock protein [Bradyrhizobium japonicum USDA 110] dbj|BAC49675.1| cold shock protein [Bradyrhizobium japonicum USDA 110] Length = 224 Score = 246 bits (628), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 115/143 (80%), Positives = 128/143 (89%), Gaps = 1/143 (0%) Query: 3 GVGQSRIGQGEYGSAPRDPAIDAFSGLGDTAANLVEVSGIIKWFDASKGYGFIVPDNGWP 62 G R+ GE+GS R+ + F+GLG+ +ANLVEV G+IKWFDASKGYGFIVPDNGWP Sbjct: 23 GTSPGRMTPGEHGSG-RESGLSPFTGLGEASANLVEVHGVIKWFDASKGYGFIVPDNGWP 81 Query: 63 DILLHVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHV 122 D+LLHVTVLRRDG+QTAYEGAR+VVEC+QRAKGYQAFR+VSMDESTAIHPAQMLPPRTHV Sbjct: 82 DVLLHVTVLRRDGFQTAYEGARIVVECIQRAKGYQAFRVVSMDESTAIHPAQMLPPRTHV 141 Query: 123 TVTATSGLERAQVKWFNRLRGFG 145 TVT TSGLERAQVKWFNRLRGFG Sbjct: 142 TVTPTSGLERAQVKWFNRLRGFG 164 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 14/95 (14%) Query: 32 TAANLVEVSGI----IKWFDASKGYGFIVPDNGWPDILLHVTVLRRDGYQTAYEGARLVV 87 T + SG+ +KWF+ +G+GF+ G PDI +H+ LRR G G ++V Sbjct: 139 THVTVTPTSGLERAQVKWFNRLRGFGFLTCGEGTPDIFVHMETLRRFGMTELRPGQYVLV 198 Query: 88 ECVQRAKGYQAFRIVSMDESTAIHPAQMLP-PRTH 121 +KG A IHP P P++H Sbjct: 199 RFGPGSKGMMA---------AEIHPETGSPGPQSH 224 >ref|YP_001205673.1| putative DNA binding cold shock protein, CspA-like [Bradyrhizobium sp. ORS 278] emb|CAL77447.1| Putative Cold shock protein, DNA binding, CspA-like [Bradyrhizobium sp. ORS 278] Length = 217 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 118/139 (84%), Positives = 125/139 (89%), Gaps = 3/139 (2%) Query: 7 SRIGQGEYGSAPRDPAIDAFSGLGDTAANLVEVSGIIKWFDASKGYGFIVPDNGWPDILL 66 +R+G RD AIDA +GLG+ NLVE+SG+IKWFDASKGYGFIVPDNGWPD+LL Sbjct: 22 NRLGADYQVGVARDSAIDALTGLGE---NLVEISGVIKWFDASKGYGFIVPDNGWPDVLL 78 Query: 67 HVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHVTVTA 126 HVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHVTVT Sbjct: 79 HVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHVTVTP 138 Query: 127 TSGLERAQVKWFNRLRGFG 145 TSGLERAQVKWFNRLRGFG Sbjct: 139 TSGLERAQVKWFNRLRGFG 157 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 31/59 (52%) Query: 43 IKWFDASKGYGFIVPDNGWPDILLHVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRI 101 +KWF+ +G+GF+ G PDI +H+ LRR G G ++V +KG A I Sbjct: 147 VKWFNRLRGFGFVTCGEGTPDIFVHMETLRRFGMTELRPGQWVLVRYGPGSKGMMAAEI 205 >ref|ZP_07027008.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] gb|EFI51851.1| cold-shock DNA-binding domain protein [Afipia sp. 1NLS2] Length = 240 Score = 239 bits (611), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 116/146 (79%), Positives = 126/146 (86%), Gaps = 1/146 (0%) Query: 1 MGGVGQSRIGQGEYGSAPRDPAIDAFSGLGD-TAANLVEVSGIIKWFDASKGYGFIVPDN 59 +GG SR+G E+ + D F+GL D AANLVE+SG+IKWFDASKGYGFIVPDN Sbjct: 35 LGGGSASRLGSQEFTAPQGRNNTDPFAGLDDGAAANLVELSGVIKWFDASKGYGFIVPDN 94 Query: 60 GWPDILLHVTVLRRDGYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPR 119 GWPDILLHVTVLRRDG+QTAYEGARLV ECVQR KGYQAFRI+SMDESTAIHPAQMLPPR Sbjct: 95 GWPDILLHVTVLRRDGFQTAYEGARLVCECVQRQKGYQAFRILSMDESTAIHPAQMLPPR 154 Query: 120 THVTVTATSGLERAQVKWFNRLRGFG 145 THV+VT TSGLERAQVKWFNRLRGFG Sbjct: 155 THVSVTPTSGLERAQVKWFNRLRGFG 180 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 4/74 (5%) Query: 32 TAANLVEVSGI----IKWFDASKGYGFIVPDNGWPDILLHVTVLRRDGYQTAYEGARLVV 87 T ++ SG+ +KWF+ +G+GF+ G PDI +H+ LRR G G ++V Sbjct: 155 THVSVTPTSGLERAQVKWFNRLRGFGFVSCGEGTPDIFVHMETLRRYGMTELRPGQFVLV 214 Query: 88 ECVQRAKGYQAFRI 101 +KG A I Sbjct: 215 RYGPGSKGMMAAEI 228 >ref|ZP_01048292.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] gb|EAQ33721.1| Cold-shock protein, DNA-binding [Nitrobacter sp. Nb-311A] Length = 202 Score = 239 bits (610), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 111/131 (84%), Positives = 120/131 (91%) Query: 15 GSAPRDPAIDAFSGLGDTAANLVEVSGIIKWFDASKGYGFIVPDNGWPDILLHVTVLRRD 74 G+ R+ FSGLGD+ AN+VE+SG+IKWFDASKGYGFIVPDNGWPD+LLHVTVLRRD Sbjct: 12 GATDREAGAGPFSGLGDSPANIVEISGVIKWFDASKGYGFIVPDNGWPDVLLHVTVLRRD 71 Query: 75 GYQTAYEGARLVVECVQRAKGYQAFRIVSMDESTAIHPAQMLPPRTHVTVTATSGLERAQ 134 GYQTAYEGARLV +CVQRAKGYQAFRI SMDESTAIHPAQMLPPRTHV+VT TSGLERAQ Sbjct: 72 GYQTAYEGARLVCDCVQRAKGYQAFRITSMDESTAIHPAQMLPPRTHVSVTPTSGLERAQ 131 Query: 135 VKWFNRLRGFG 145 VKWFNRLRGFG Sbjct: 132 VKWFNRLRGFG 142 Score = 43.1 bits (100), Expect = 0.014, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%) Query: 32 TAANLVEVSGI----IKWFDASKGYGFIVPDNGWPDILLHVTVLRRDGYQTAYEGARLVV 87 T ++ SG+ +KWF+ +G+GF+ +G PDI +H+ LRR G G ++V Sbjct: 117 THVSVTPTSGLERAQVKWFNRLRGFGFLTRGDGTPDIFVHMETLRRFGITELRPGQFVLV 176 Query: 88 ECVQRAKGYQAFRI 101 +KG A + Sbjct: 177 RFGPGSKGMMAAEV 190