BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0093.p         (53 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_485003.1| hypothetical protein RPB_1382 [Rhodopseudomonas...    41   0.077
ref|YP_001205671.1| hypothetical protein BRADO3670 [Bradyrhizobi...    39   0.35 
ref|YP_001241064.1| hypothetical protein BBta_5163 [Bradyrhizobi...    39   0.37 
ref|NP_949565.1| hypothetical protein RPA4229 [Rhodopseudomonas ...    38   0.61 
ref|YP_001205046.1| hypothetical protein BRADO3003 [Bradyrhizobi...    37   0.70 

>ref|YP_485003.1| hypothetical protein RPB_1382 [Rhodopseudomonas palustris HaA2]
 gb|ABD06092.1| hypothetical protein RPB_1382 [Rhodopseudomonas palustris HaA2]
          Length = 136

 Score = 40.8 bits (94), Expect = 0.077,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 4/42 (9%)

Query: 1   MTDQEDRIAREREEIVARVASFRATQQKFERDRQEYYDNTLG 42
           MT   D    ER EI+ R+A+FR  Q K  +DR++YYD TL 
Sbjct: 85  MTSTAD----ERAEILKRIAAFRNLQIKLRQDREKYYDQTLA 122


>ref|YP_001205671.1| hypothetical protein BRADO3670 [Bradyrhizobium sp. ORS 278]
 emb|CAL77445.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 54

 Score = 38.5 bits (88), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%), Gaps = 4/50 (8%)

Query: 4  QEDRIAREREEIVARVASFRATQQKFERDRQEYYDNTLGNAWSGFQRKTA 53
          Q+DR  +ER EI AR+A F++TQ+KF R+R+E+       AW   QR  A
Sbjct: 7  QDDRRTQERAEITARLARFKSTQEKFAREREEF----ARQAWRKAQRGEA 52


>ref|YP_001241064.1| hypothetical protein BBta_5163 [Bradyrhizobium sp. BTAi1]
 gb|ABQ37158.1| hypothetical protein BBta_5163 [Bradyrhizobium sp. BTAi1]
          Length = 184

 Score = 38.5 bits (88), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 18/28 (64%), Positives = 22/28 (78%)

Query: 14  EIVARVASFRATQQKFERDRQEYYDNTL 41
           EI ARVA FRA Q++F R+RQEY+  TL
Sbjct: 142 EIRARVARFRAHQERFNRERQEYFSATL 169


>ref|NP_949565.1| hypothetical protein RPA4229 [Rhodopseudomonas palustris CGA009]
 emb|CAE29670.1| hypothetical protein RPA4229 [Rhodopseudomonas palustris CGA009]
          Length = 116

 Score = 37.7 bits (86), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 9   AREREEIVARVASFRATQQKFERDRQEYYDNTLG 42
           +REREEI  R+A+FR  Q   +++R++YY+ TL 
Sbjct: 69  SREREEIAKRIAAFRNLQISLKQEREDYYERTLA 102


>ref|YP_001205046.1| hypothetical protein BRADO3003 [Bradyrhizobium sp. ORS 278]
 emb|CAL76809.1| hypothetical protein BRADO3003 [Bradyrhizobium sp. ORS 278]
          Length = 211

 Score = 37.4 bits (85), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 18/29 (62%), Positives = 21/29 (72%)

Query: 14  EIVARVASFRATQQKFERDRQEYYDNTLG 42
           EI ARVA FRA Q++F R+RQEY   TL 
Sbjct: 169 EIRARVARFRAHQERFNRERQEYLSATLA 197