BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0091.p         (115 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_486543.1| hypothetical protein RPB_2930 [Rhodopseudomonas...   164   5e-39
ref|YP_569670.1| hypothetical protein RPD_2539 [Rhodopseudomonas...   156   1e-36
ref|YP_533236.1| hypothetical protein RPC_3376 [Rhodopseudomonas...   100   1e-19
ref|NP_948525.1| hypothetical protein RPA3186 [Rhodopseudomonas ...    96   2e-18
ref|YP_004108569.1| hypothetical protein Rpdx1_2244 [Rhodopseudo...    96   2e-18

>ref|YP_486543.1| hypothetical protein RPB_2930 [Rhodopseudomonas palustris HaA2]
 gb|ABD07632.1| hypothetical protein RPB_2930 [Rhodopseudomonas palustris HaA2]
          Length = 116

 Score =  164 bits (414), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 96/114 (84%)

Query: 1   MKNGLYSIHIHMTDGVRGRDSGILILRDGLLIGGGPYFWSIGAYTAGEGTWKGHLSTNQH 60
           M+NGLYSIHI M DGVRGR +GI+ILRDG L+GG PYFW++G YT G+G WKG L T QH
Sbjct: 1   MRNGLYSIHIRMLDGVRGRSNGIIILRDGRLLGGDPYFWTVGDYTIGDGHWKGELLTRQH 60

Query: 61  SPFADPFTRPLFAGQEVTSGFSGTFSGDEAEVFGTVLVGTRSLGFRATLKRLAD 114
           +P+A+   RP+FAG++VT+GF+GTF+ D +EVFGT LVG+RS+ FRATL+RL+D
Sbjct: 61  TPYAETPARPVFAGRDVTTGFTGTFADDRSEVFGTSLVGSRSVSFRATLRRLSD 114


>ref|YP_569670.1| hypothetical protein RPD_2539 [Rhodopseudomonas palustris BisB5]
 gb|ABE39769.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 116

 Score =  156 bits (394), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 74/114 (64%), Positives = 91/114 (79%)

Query: 1   MKNGLYSIHIHMTDGVRGRDSGILILRDGLLIGGGPYFWSIGAYTAGEGTWKGHLSTNQH 60
           M+NGLYSIHI M DGVR   + I+ILRDG L+GG PYFWS+G YT G+G WKG L T QH
Sbjct: 1   MRNGLYSIHIRMLDGVRAWANWIIILRDGKLLGGDPYFWSVGDYTVGDGNWKGDLLTRQH 60

Query: 61  SPFADPFTRPLFAGQEVTSGFSGTFSGDEAEVFGTVLVGTRSLGFRATLKRLAD 114
           +P+A+   RP+FAG+EV++GFSGTF+ D +EVFGT LVG+RS+ FRATL  LAD
Sbjct: 61  TPYAETPARPVFAGREVSTGFSGTFADDRSEVFGTSLVGSRSVSFRATLHWLAD 114


>ref|YP_533236.1| hypothetical protein RPC_3376 [Rhodopseudomonas palustris BisB18]
 gb|ABD88917.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 116

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/117 (45%), Positives = 75/117 (64%), Gaps = 4/117 (3%)

Query: 1   MKNGLYSIHIHMTDGVRGRDSGILILRDGLLIGGGPYFWSIGAYTAGEGTWKGHLSTNQH 60
           M+NGLYSIH+ + DG  G+ SG++I R+G ++GG  Y +  G+YT    ++KG +  +QH
Sbjct: 1   MQNGLYSIHVDLLDGRSGKGSGVVIFRNGTILGGDAYLFYTGSYTVSGDSFKGEVLVSQH 60

Query: 61  SPFADPFTRPLFAGQE--VTSGFSGTFSGDEAEVFGTVLVGTRSLGFRATLKRLADA 115
           +P   P   PLF GQ+  V  G SGT +   A + GT LVG   L F+ATL++LADA
Sbjct: 61  TP--SPDADPLFGGQKNPVGIGVSGTATATSAVINGTALVGKACLLFKATLRKLADA 115


>ref|NP_948525.1| hypothetical protein RPA3186 [Rhodopseudomonas palustris CGA009]
 ref|YP_001992574.1| hypothetical protein Rpal_3599 [Rhodopseudomonas palustris TIE-1]
 emb|CAE28627.1| hypothetical protein RPA3186 [Rhodopseudomonas palustris CGA009]
 gb|ACF02099.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1]
          Length = 116

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 73/117 (62%), Gaps = 4/117 (3%)

Query: 1   MKNGLYSIHIHMTDGVRGRDSGILILRDGLLIGGGPYFWSIGAYTAGEGTWKGHLSTNQH 60
           M+NGLYSIH+ + DG  G+ SG+ + RDG ++GG  Y + +G+Y     ++KG ++  QH
Sbjct: 1   MRNGLYSIHVDLLDGRSGKGSGVALFRDGKILGGDAYLYYVGSYVVSGDSFKGEVTVTQH 60

Query: 61  SPFADPFTRPLFAGQE--VTSGFSGTFSGDEAEVFGTVLVGTRSLGFRATLKRLADA 115
           +P   P   PLF GQ+  V  G +GT  G+ A + GT LVG  S  FRATL+ LA A
Sbjct: 61  TP--SPDANPLFGGQKEPVGVGVTGTSDGNAAVMTGTALVGKSSQLFRATLRWLAPA 115


>ref|YP_004108569.1| hypothetical protein Rpdx1_2244 [Rhodopseudomonas palustris DX-1]
 gb|ADU43836.1| hypothetical protein Rpdx1_2244 [Rhodopseudomonas palustris DX-1]
          Length = 116

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/117 (44%), Positives = 74/117 (63%), Gaps = 4/117 (3%)

Query: 1   MKNGLYSIHIHMTDGVRGRDSGILILRDGLLIGGGPYFWSIGAYTAGEGTWKGHLSTNQH 60
           M+NGLYSIH+ + DG  G+ SG+++ RDG ++GG  Y + +G+Y +   ++KG ++  QH
Sbjct: 1   MRNGLYSIHVDLLDGRSGKGSGVVLFRDGKILGGDAYLFYVGSYVSTGDSFKGEVTVTQH 60

Query: 61  SPFADPFTRPLFAGQE--VTSGFSGTFSGDEAEVFGTVLVGTRSLGFRATLKRLADA 115
           +P   P   PLF GQ+  V  G +GT  G  A + GT LVG  S  FRATL+ LA A
Sbjct: 61  TP--SPDANPLFGGQKEPVGVGVTGTSDGQAAVMTGTALVGKSSQLFRATLRWLAPA 115