BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0086.p         (85 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_532662.1| hypothetical protein RPC_2795 [Rhodopseudomonas...   122   2e-26
ref|YP_004109311.1| type IV pilus assembly PilZ [Rhodopseudomona...   120   7e-26
ref|YP_486554.1| hypothetical protein RPB_2941 [Rhodopseudomonas...   120   8e-26
ref|NP_947864.1| hypothetical protein RPA2522 [Rhodopseudomonas ...   120   1e-25
ref|YP_001205664.1| hypothetical protein BRADO3661 [Bradyrhizobi...   119   2e-25

>ref|YP_532662.1| hypothetical protein RPC_2795 [Rhodopseudomonas palustris BisB18]
 gb|ABD88343.1| conserved hypothetical protein [Rhodopseudomonas palustris
          BisB18]
          Length = 85

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 69/83 (83%)

Query: 1  MAPGTKKRETRKSLRQSGWITLDGGFAARPCVVEDMSSSGAKITIQDNNTLPAKLRLAFS 60
          MA   KKR++RK+++Q+GWITL+GGFAARPCVV D+S+SGAKIT+Q    L +KLRLAFS
Sbjct: 1  MASINKKRDSRKAVQQTGWITLEGGFAARPCVVLDLSASGAKITLQSAQALNSKLRLAFS 60

Query: 61 RDARTGRACEVVWREGRTFGVKF 83
          RDAR GR CEVVWR G T G+KF
Sbjct: 61 RDARNGRDCEVVWRRGSTLGLKF 83


>ref|YP_004109311.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris DX-1]
 gb|ADU44578.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris DX-1]
          Length = 85

 Score =  120 bits (301), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 65/84 (77%)

Query: 1  MAPGTKKRETRKSLRQSGWITLDGGFAARPCVVEDMSSSGAKITIQDNNTLPAKLRLAFS 60
          M     KRE RKS+RQSGWITLDGGFAARPC V D+SSSGAK+ + +  +L A+LRL FS
Sbjct: 1  MVKNNTKREPRKSVRQSGWITLDGGFAARPCEVLDLSSSGAKLVLNEAESLGARLRLGFS 60

Query: 61 RDARTGRACEVVWREGRTFGVKFV 84
          RDAR GR CEVVWR G T GVKFV
Sbjct: 61 RDARQGRQCEVVWRRGTTLGVKFV 84


>ref|YP_486554.1| hypothetical protein RPB_2941 [Rhodopseudomonas palustris HaA2]
 gb|ABD07643.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 85

 Score =  120 bits (300), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/84 (70%), Positives = 68/84 (80%)

Query: 1  MAPGTKKRETRKSLRQSGWITLDGGFAARPCVVEDMSSSGAKITIQDNNTLPAKLRLAFS 60
          MA    KRE+RKS+RQSGWITLDGGFAARPC V D+S++GAK+ + D  +L  KLRLAFS
Sbjct: 1  MAKERSKRESRKSVRQSGWITLDGGFAARPCEVIDLSTTGAKLNLADALSLGPKLRLAFS 60

Query: 61 RDARTGRACEVVWREGRTFGVKFV 84
          RD+RTGR CEVVWR G T GVKFV
Sbjct: 61 RDSRTGRNCEVVWRRGTTVGVKFV 84


>ref|NP_947864.1| hypothetical protein RPA2522 [Rhodopseudomonas palustris CGA009]
 ref|YP_001991782.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris TIE-1]
 emb|CAE27963.1| hypothetical protein RPA2522 [Rhodopseudomonas palustris CGA009]
 gb|ACF01307.1| type IV pilus assembly PilZ [Rhodopseudomonas palustris TIE-1]
          Length = 85

 Score =  120 bits (300), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 66/84 (78%)

Query: 1  MAPGTKKRETRKSLRQSGWITLDGGFAARPCVVEDMSSSGAKITIQDNNTLPAKLRLAFS 60
          MA    KRE RKS+RQSGWITLDGGFAARPC V D+SSSGAK+ + +  +L ++LRL FS
Sbjct: 1  MAKDKTKREPRKSVRQSGWITLDGGFAARPCEVLDLSSSGAKLVLNEAESLGSRLRLGFS 60

Query: 61 RDARTGRACEVVWREGRTFGVKFV 84
          RDAR GR CEVVWR G T GVKFV
Sbjct: 61 RDARQGRQCEVVWRRGTTLGVKFV 84


>ref|YP_001205664.1| hypothetical protein BRADO3661 [Bradyrhizobium sp. ORS 278]
 emb|CAL77438.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 278]
          Length = 86

 Score =  119 bits (297), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 67/84 (79%)

Query: 1  MAPGTKKRETRKSLRQSGWITLDGGFAARPCVVEDMSSSGAKITIQDNNTLPAKLRLAFS 60
          M    KKRE RKS++Q  WITLDGGFA R C+V+D+SSSGA++T+Q+   LPA +RLAF+
Sbjct: 1  MMAAPKKREARKSMKQPAWITLDGGFAVRHCLVQDISSSGARLTLQEAAALPATIRLAFA 60

Query: 61 RDARTGRACEVVWREGRTFGVKFV 84
          RDARTGR C+VVWR G + GVKF+
Sbjct: 61 RDARTGRLCQVVWRRGASVGVKFI 84