BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0075.p         (125 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_771030.1| hypothetical protein bll4390 [Bradyrhizobium ja...   208   2e-52
ref|ZP_01048311.1| hypothetical protein NB311A_18893 [Nitrobacte...   184   5e-45
ref|YP_001205596.1| hypothetical protein BRADO3591 [Bradyrhizobi...   176   1e-42
ref|YP_001239991.1| hypothetical protein BBta_4019 [Bradyrhizobi...   171   3e-41
ref|YP_532671.1| hypothetical protein RPC_2804 [Rhodopseudomonas...   170   6e-41

>ref|NP_771030.1| hypothetical protein bll4390 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49655.1| bll4390 [Bradyrhizobium japonicum USDA 110]
          Length = 192

 Score =  208 bits (530), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/124 (83%), Positives = 117/124 (94%)

Query: 2   IVTFWARNMPGFWWSLISAALAVLAGMVLLARPMQGVLTLTIVVGAYFVAEGVATIMYAL 61
           IVT+WAR+ PGFWWSLISAALAVLAGM+LLARPMQ VLTLTIV+GAYF+AEGVATIMYAL
Sbjct: 67  IVTYWARSTPGFWWSLISAALAVLAGMLLLARPMQAVLTLTIVLGAYFLAEGVATIMYAL 126

Query: 62  EHRRELSGRWSWLLIAGLMDIVIAFFIIAGLPESAGWAIGLLVGLNLMFGGATLIGMALA 121
           EHRRELSGRWSWLLI+GL+DI I+F +I GLP SA WAIG+LVG+NL+FGGATLIGMALA
Sbjct: 127 EHRRELSGRWSWLLISGLVDIAISFMVITGLPSSAEWAIGVLVGINLLFGGATLIGMALA 186

Query: 122 ARNT 125
           ARN+
Sbjct: 187 ARNS 190


>ref|ZP_01048311.1| hypothetical protein NB311A_18893 [Nitrobacter sp. Nb-311A]
 gb|EAQ33740.1| hypothetical protein NB311A_18893 [Nitrobacter sp. Nb-311A]
          Length = 192

 Score =  184 bits (466), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 93/123 (75%), Positives = 106/123 (86%)

Query: 2   IVTFWARNMPGFWWSLISAALAVLAGMVLLARPMQGVLTLTIVVGAYFVAEGVATIMYAL 61
           I TFWAR MPGFWWSL+SA LA+L G++LLA+P QG+LTLTI+VGAYF+AEG  TIMYAL
Sbjct: 68  IATFWARGMPGFWWSLLSATLAILVGILLLAQPAQGMLTLTILVGAYFLAEGAVTIMYAL 127

Query: 62  EHRRELSGRWSWLLIAGLMDIVIAFFIIAGLPESAGWAIGLLVGLNLMFGGATLIGMALA 121
           EHRRELS RW WLL AG+MDI+IA  I+ GLP SA WAIGLLVGLN++FGGATLIGMALA
Sbjct: 128 EHRRELSQRWGWLLTAGVMDIIIAGVIVVGLPGSASWAIGLLVGLNMIFGGATLIGMALA 187

Query: 122 ARN 124
            R 
Sbjct: 188 LRK 190


>ref|YP_001205596.1| hypothetical protein BRADO3591 [Bradyrhizobium sp. ORS 278]
 emb|CAL77370.1| conserved hypothetical protein; putative membrane protein
           [Bradyrhizobium sp. ORS 278]
          Length = 195

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/122 (75%), Positives = 111/122 (90%)

Query: 3   VTFWARNMPGFWWSLISAALAVLAGMVLLARPMQGVLTLTIVVGAYFVAEGVATIMYALE 62
           +TFWAR MPGFWWSL+SA LA+LAG++L+A+P+QG LTLT+V+G YF+AEGVATIMYALE
Sbjct: 73  LTFWARGMPGFWWSLLSAVLAILAGLILVAQPIQGTLTLTVVIGVYFLAEGVATIMYALE 132

Query: 63  HRRELSGRWSWLLIAGLMDIVIAFFIIAGLPESAGWAIGLLVGLNLMFGGATLIGMALAA 122
           HRRELSGRWSWL I+GL+DI IA  II+GLP +A WAIGLLVG+NL+FGG ++IGMALAA
Sbjct: 133 HRRELSGRWSWLAISGLVDIAIAGIIISGLPGTATWAIGLLVGINLLFGGLSMIGMALAA 192

Query: 123 RN 124
           RN
Sbjct: 193 RN 194


>ref|YP_001239991.1| hypothetical protein BBta_4019 [Bradyrhizobium sp. BTAi1]
 gb|ABQ36085.1| putative membrane protein of unknown function [Bradyrhizobium sp.
           BTAi1]
          Length = 195

 Score =  171 bits (434), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/122 (73%), Positives = 111/122 (90%)

Query: 3   VTFWARNMPGFWWSLISAALAVLAGMVLLARPMQGVLTLTIVVGAYFVAEGVATIMYALE 62
           +TFWAR MPGFWWSL+SAALA++AG +L+A+P+QG +TLT+V+G YF+AEGVATIMYALE
Sbjct: 73  LTFWARGMPGFWWSLLSAALAIIAGFILVAQPVQGTVTLTVVIGVYFLAEGVATIMYALE 132

Query: 63  HRRELSGRWSWLLIAGLMDIVIAFFIIAGLPESAGWAIGLLVGLNLMFGGATLIGMALAA 122
           HRRELSGRWSWL I+G++DI IA  II+GLP +A WAIGLLVG+NL+FGG ++IGMALAA
Sbjct: 133 HRRELSGRWSWLAISGIVDIAIAGIIISGLPGTALWAIGLLVGINLLFGGLSMIGMALAA 192

Query: 123 RN 124
           RN
Sbjct: 193 RN 194


>ref|YP_532671.1| hypothetical protein RPC_2804 [Rhodopseudomonas palustris BisB18]
 gb|ABD88352.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 190

 Score =  170 bits (431), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 104/122 (85%)

Query: 3   VTFWARNMPGFWWSLISAALAVLAGMVLLARPMQGVLTLTIVVGAYFVAEGVATIMYALE 62
           +T WAR  PGFWWSL SA +A++AG++LLARP++  LTLTIVVGAYF+AEGV TIMYALE
Sbjct: 68  LTIWARQSPGFWWSLASAVVALIAGVILLARPLEATLTLTIVVGAYFLAEGVVTIMYALE 127

Query: 63  HRRELSGRWSWLLIAGLMDIVIAFFIIAGLPESAGWAIGLLVGLNLMFGGATLIGMALAA 122
           HRREL  RW WLL +GL D+++A  II+GLP +A WAIGLLVG+NL+FGGA++I MALAA
Sbjct: 128 HRRELIERWGWLLASGLADLLVAAVIISGLPGTALWAIGLLVGINLLFGGASMIAMALAA 187

Query: 123 RN 124
           RN
Sbjct: 188 RN 189