BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0071.p (363 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771028.1| hypothetical protein blr4388 [Bradyrhizobium ja... 553 e-155 ref|YP_577552.1| hypothetical protein Nham_2300 [Nitrobacter ham... 540 e-151 ref|ZP_08630024.1| lysine 2,3-aminomutase [Bradyrhizobiaceae bac... 533 e-149 ref|NP_947857.1| hypothetical protein RPA2515 [Rhodopseudomonas ... 533 e-149 ref|ZP_01048313.1| hypothetical protein NB311A_18903 [Nitrobacte... 531 e-149 >ref|NP_771028.1| hypothetical protein blr4388 [Bradyrhizobium japonicum USDA 110] dbj|BAC49653.1| blr4388 [Bradyrhizobium japonicum USDA 110] Length = 364 Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust. Identities = 276/360 (76%), Positives = 306/360 (85%), Gaps = 3/360 (0%) Query: 7 KLAATLRQPRELVDAGLAPVAALAGLERVAARYAIAVTPELAALIDPADPDDPIARQFIP 66 LA TLR+P ELV LAP AAL LERVAARYA+A+TP L LID +DPDDPIARQF+P Sbjct: 5 NLARTLREPAELVAEHLAPAAALPALERVAARYAVAITPALVELIDTSDPDDPIARQFVP 64 Query: 67 SADELVEQPGESADPIGDDAHSPVAGIVHRYPDRVLFKLVHVCAVYCRFCFRREMVGPGK 126 +A EL QPGESADPIGD HSPV GIVHRYPDRVLFKLVHVCAVYCRFCFRREMVGPGK Sbjct: 65 TAAELEMQPGESADPIGDHPHSPVPGIVHRYPDRVLFKLVHVCAVYCRFCFRREMVGPGK 124 Query: 127 ASALSDDAYRAGLDYIRSHPEIWEVILTGGDPLMLSPRRLTEIMADLAGIDHVKIVRLHT 186 +ALSD AYRA +DYIR+H EIWEVILTGGDPLMLSPRR++EIMADLAGIDHVKI+RLHT Sbjct: 125 DNALSDSAYRAAVDYIRAHDEIWEVILTGGDPLMLSPRRMSEIMADLAGIDHVKIIRLHT 184 Query: 187 RVPIADPGRINPEMIAALRVEGATTWIAIHANHPRELSINARAACARLADAGIPLVSQSV 246 RVP+ADP R++ EM+AAL+V GATTW+A+HANH REL+ ARAACARL DAGIP+VSQSV Sbjct: 185 RVPVADPARVSDEMVAALKVAGATTWVALHANHARELTEGARAACARLVDAGIPMVSQSV 244 Query: 247 LLRGVNDDAATLEALMRGFVECRIKPYYLHHGDLAPGTAHLRTTIEAGQELMRALRGRVS 306 LLRGVND+ L LMR FVECRIKPYYLHHGDLAPGTAHLRTT+ GQELMR LRGRVS Sbjct: 245 LLRGVNDNVTALSDLMRAFVECRIKPYYLHHGDLAPGTAHLRTTLAEGQELMRQLRGRVS 304 Query: 307 GLCQPDYVLDIPGGHGKAPIGPSYL---SQPVSREREDPVERRYRIVDYCGDVHLYPPQS 363 GLCQPDYV+DIPGG GK+P+GP+Y+ RE E RYRIVDYCGDVHLYPP++ Sbjct: 305 GLCQPDYVIDIPGGAGKSPVGPNYVLAAQNTAPDAREAATETRYRIVDYCGDVHLYPPET 364 >ref|YP_577552.1| hypothetical protein Nham_2300 [Nitrobacter hamburgensis X14] gb|ABE63092.1| L-lysine 2,3-aminomutase [Nitrobacter hamburgensis X14] Length = 366 Score = 540 bits (1390), Expect = e-151, Method: Compositional matrix adjust. Identities = 280/362 (77%), Positives = 311/362 (85%), Gaps = 2/362 (0%) Query: 3 RIDPKLAATLRQPRELVDAGLAPVAALAGLERVAARYAIAVTPELAALIDPADPDDPIAR 62 R + + +TLRQP +L+ GLAP AAL L RVAARYAIAVTPE+A+LIDP DPDDPIAR Sbjct: 4 RTNRSVVSTLRQPEDLIAHGLAPAAALPDLARVAARYAIAVTPEVASLIDPDDPDDPIAR 63 Query: 63 QFIPSADELVEQPGESADPIGDDAHSPVAGIVHRYPDRVLFKLVHVCAVYCRFCFRREMV 122 Q++PS DEL QPGE ADPIGD AHSPV GIVHRYPDRVL KLVHVCAVYCRFCFRREMV Sbjct: 64 QYLPSVDELAAQPGERADPIGDRAHSPVDGIVHRYPDRVLLKLVHVCAVYCRFCFRREMV 123 Query: 123 GPGKASALSDDAYRAGLDYIRSHPEIWEVILTGGDPLMLSPRRLTEIMADLAGIDHVKIV 182 GP K +ALS A A LDYIRSHPE+WEVILTGGDPLMLSPRRL EIMA+LAGI HVKIV Sbjct: 124 GPAKETALSKSAATAALDYIRSHPEVWEVILTGGDPLMLSPRRLAEIMAELAGIGHVKIV 183 Query: 183 RLHTRVPIADPGRINPEMIAALRVEGATTWIAIHANHPRELSINARAACARLADAGIPLV 242 R+H+RVP+ADP R++ EM+AAL+ GATTW+A+HANHPREL+ AR+ACAR+ DAGIP+V Sbjct: 184 RIHSRVPVADPTRVSDEMVAALKAAGATTWLALHANHPRELTAAARSACARIVDAGIPMV 243 Query: 243 SQSVLLRGVNDDAATLEALMRGFVECRIKPYYLHHGDLAPGTAHLRTTIEAGQELMRALR 302 SQSVLLRGVNDDAATLEALMR FVECRIKPYYLHHGDLAPGTAHLRTT+E G+ LMRALR Sbjct: 244 SQSVLLRGVNDDAATLEALMRAFVECRIKPYYLHHGDLAPGTAHLRTTLEQGRALMRALR 303 Query: 303 GRVSGLCQPDYVLDIPGGHGKAPIGPSYLSQP--VSREREDPVERRYRIVDYCGDVHLYP 360 GRVSGLCQPDYVLDIPGG+GK+P+GP YLSQ E E E RYRIVDYCG VHLYP Sbjct: 304 GRVSGLCQPDYVLDIPGGYGKSPVGPDYLSQSDLTFGEGEHRPESRYRIVDYCGGVHLYP 363 Query: 361 PQ 362 P+ Sbjct: 364 PK 365 >ref|ZP_08630024.1| lysine 2,3-aminomutase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP07393.1| lysine 2,3-aminomutase [Bradyrhizobiaceae bacterium SG-6C] Length = 355 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 267/352 (75%), Positives = 299/352 (84%), Gaps = 5/352 (1%) Query: 10 ATLRQPRELVDAGLAPVAALAGLERVAARYAIAVTPELAALIDPADPDDPIARQFIPSAD 69 ATLR P EL+ GLA +L LE+VAARYA+AVTP +AALID D DPI RQ+IPSA+ Sbjct: 6 ATLRTPAELIAQGLASPDSLPALEKVAARYAVAVTPAVAALIDTNDASDPIGRQYIPSAE 65 Query: 70 ELVEQPGESADPIGDDAHSPVAGIVHRYPDRVLFKLVHVCAVYCRFCFRREMVGPGKASA 129 ELV Q GE ADPIGD AHSPV+GIVHRYPDRVLFKLVHVCAVYCRFCFRREMVGPGK + Sbjct: 66 ELVTQTGEDADPIGDHAHSPVSGIVHRYPDRVLFKLVHVCAVYCRFCFRREMVGPGKDTG 125 Query: 130 LSDDAYRAGLDYIRSHPEIWEVILTGGDPLMLSPRRLTEIMADLAGIDHVKIVRLHTRVP 189 L+D+ Y LDYIR+HPEIWEVILTGGDPLMLS RRL EIM DLA IDHVKI+R+HTRVP Sbjct: 126 LTDEVYSKALDYIRAHPEIWEVILTGGDPLMLSARRLKEIMTDLAAIDHVKIIRIHTRVP 185 Query: 190 IADPGRINPEMIAALRVEGATTWIAIHANHPRELSINARAACARLADAGIPLVSQSVLLR 249 +ADP R+ ++ AALRV+GATTW+A+HANHPRE + AR ACAR+ DAGIP+VSQSVLLR Sbjct: 186 VADPARVMDDVAAALRVKGATTWVAVHANHPREFTAEAREACARMIDAGIPMVSQSVLLR 245 Query: 250 GVNDDAATLEALMRGFVECRIKPYYLHHGDLAPGTAHLRTTIEAGQELMRALRGRVSGLC 309 GVND+ TLEALMR FVECRIKPYYLHHGDLAPGTAHLRTT+E GQ+LM+ LRGRVSGLC Sbjct: 246 GVNDNPQTLEALMRTFVECRIKPYYLHHGDLAPGTAHLRTTLEQGQKLMQHLRGRVSGLC 305 Query: 310 QPDYVLDIPGGHGKAPIGPSYLSQPVSREREDPVERRYRIVDYCGDVHLYPP 361 QPDYVLDIPGGHGKAP+GP YL SR R+D E RYR+ DYCGDVH+YPP Sbjct: 306 QPDYVLDIPGGHGKAPVGPQYL----SRIRDDS-EGRYRVADYCGDVHIYPP 352 >ref|NP_947857.1| hypothetical protein RPA2515 [Rhodopseudomonas palustris CGA009] emb|CAE27956.1| putative L-lysine 2,3-aminomutase [Rhodopseudomonas palustris CGA009] Length = 363 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 266/363 (73%), Positives = 299/363 (82%), Gaps = 4/363 (1%) Query: 1 MNRIDPKLAATLRQPRELVDAGLAPVAALAGLERVAARYAIAVTPELAALIDPADPDDPI 60 + R++ AATLRQP EL+ GLA A L VAARYAIAVTP +AALID ADPDDPI Sbjct: 4 VTRLNTPAAATLRQPDELIAEGLAAADDRAMLSEVAARYAIAVTPAVAALIDRADPDDPI 63 Query: 61 ARQFIPSADELVEQPGESADPIGDDAHSPVAGIVHRYPDRVLFKLVHVCAVYCRFCFRRE 120 ARQ+IPSA+EL E DPIGD AH+PV GIVHR+ DRVLFK VHVCAVYCRFCFRRE Sbjct: 64 ARQYIPSAEELSSLAFERDDPIGDAAHAPVEGIVHRHRDRVLFKPVHVCAVYCRFCFRRE 123 Query: 121 MVGPGKASALSDDAYRAGLDYIRSHPEIWEVILTGGDPLMLSPRRLTEIMADLAGIDHVK 180 MVGPGK +ALS +A A LDYIR+H EIWEVI TGGDPLMLSPRRL EIMA+LA I+HVK Sbjct: 124 MVGPGKDNALSREATAAALDYIRAHDEIWEVIFTGGDPLMLSPRRLAEIMAELAAIEHVK 183 Query: 181 IVRLHTRVPIADPGRINPEMIAALRVEGATTWIAIHANHPRELSINARAACARLADAGIP 240 IVR HTR+P+ADP RI P+++ ALR G TTW+A+HANHPREL+ +ARAACAR+ DAGIP Sbjct: 184 IVRFHTRLPVADPARITPDLVRALRAPGKTTWLALHANHPRELTGDARAACARIVDAGIP 243 Query: 241 LVSQSVLLRGVNDDAATLEALMRGFVECRIKPYYLHHGDLAPGTAHLRTTIEAGQELMRA 300 +VSQSVLLRGVNDDAATLEALMR FVECRIKPYYLHHGDLAPGTAHLRTT+ GQ LMRA Sbjct: 244 MVSQSVLLRGVNDDAATLEALMRAFVECRIKPYYLHHGDLAPGTAHLRTTLAEGQALMRA 303 Query: 301 LRGRVSGLCQPDYVLDIPGGHGKAPIGPSYLSQPVSREREDPVERRYRIVDYCGDVHLYP 360 LRG VSGLCQP+YVLDIPGG+GKAP+GP+YLS R+ RYR+ DYCG+VHLYP Sbjct: 304 LRGNVSGLCQPEYVLDIPGGYGKAPVGPNYLSDADGTGRDS----RYRVADYCGEVHLYP 359 Query: 361 PQS 363 P S Sbjct: 360 PLS 362 >ref|ZP_01048313.1| hypothetical protein NB311A_18903 [Nitrobacter sp. Nb-311A] gb|EAQ33742.1| hypothetical protein NB311A_18903 [Nitrobacter sp. Nb-311A] Length = 365 Score = 531 bits (1368), Expect = e-149, Method: Compositional matrix adjust. Identities = 276/365 (75%), Positives = 305/365 (83%), Gaps = 2/365 (0%) Query: 1 MNRIDPKLAATLRQPRELVDAGLAPVAALAGLERVAARYAIAVTPELAALIDPADPDDPI 60 M RI+ +T+R P +L+ GLAP AALA LE+VAARYAIA+TPE+A LIDP DPDDPI Sbjct: 1 MRRINKSAVSTVRHPEDLIAHGLAPAAALADLEKVAARYAIAITPEVAGLIDPTDPDDPI 60 Query: 61 ARQFIPSADELVEQPGESADPIGDDAHSPVAGIVHRYPDRVLFKLVHVCAVYCRFCFRRE 120 ARQ++PSA+EL QPGE ADPIGD AHSPV GIVHRYPDRVL KL+HVCAVYCRFCFRRE Sbjct: 61 ARQYLPSANELAAQPGERADPIGDHAHSPVDGIVHRYPDRVLLKLIHVCAVYCRFCFRRE 120 Query: 121 MVGPGKASALSDDAYRAGLDYIRSHPEIWEVILTGGDPLMLSPRRLTEIMADLAGIDHVK 180 MVGP K +ALS A A LDYIR+HPE+WEVILTGGDPLMLSPRRL EIMA+LA IDHV+ Sbjct: 121 MVGPAKETALSKSATTAALDYIRAHPEVWEVILTGGDPLMLSPRRLAEIMAELAAIDHVR 180 Query: 181 IVRLHTRVPIADPGRINPEMIAALRVEGATTWIAIHANHPRELSINARAACARLADAGIP 240 IVR+HTRVP+AD R+ EM+A LR EGA TW+A+HANHPREL+ ARAACAR+ DAGIP Sbjct: 181 IVRIHTRVPVADSARVTDEMVAGLRTEGAATWLALHANHPRELTAAARAACARIVDAGIP 240 Query: 241 LVSQSVLLRGVNDDAATLEALMRGFVECRIKPYYLHHGDLAPGTAHLRTTIEAGQELMRA 300 +VSQSVLLRGVNDDAATLE LMR FVECRIKPYYLHHGDLAPGTAHLRTT+E GQ LMRA Sbjct: 241 MVSQSVLLRGVNDDAATLETLMRAFVECRIKPYYLHHGDLAPGTAHLRTTLEEGQLLMRA 300 Query: 301 LRGRVSGLCQPDYVLDIPGGHGKAPIGPSY--LSQPVSREREDPVERRYRIVDYCGDVHL 358 LRGRVSGLCQPDYVLDIPGG+GK P+GP Y LS R E E RY I DYCG VHL Sbjct: 301 LRGRVSGLCQPDYVLDIPGGYGKVPVGPDYMSLSDLTYRGGEHRPELRYHITDYCGGVHL 360 Query: 359 YPPQS 363 YPP S Sbjct: 361 YPPVS 365