BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0070.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001239986.1| putative lysyl-tRNA synthetase (lysine--tRNA...   259   8e-68
ref|NP_771027.1| lysyl-tRNA synthetase [Bradyrhizobium japonicum...   259   1e-67
ref|YP_486568.1| tRNA synthetase, class II (D, K and N) [Rhodops...   258   2e-67
ref|YP_569636.1| lysine--tRNA ligase [Rhodopseudomonas palustris...   251   3e-65
ref|YP_532675.1| lysine--tRNA ligase [Rhodopseudomonas palustris...   249   1e-64

>ref|YP_001239986.1| putative lysyl-tRNA synthetase (lysine--tRNA ligase)
           [Bradyrhizobium sp. BTAi1]
 gb|ABQ36080.1| Putative lysyl-tRNA synthetase (Lysine--tRNA ligase)
           [Bradyrhizobium sp. BTAi1]
          Length = 351

 Score =  259 bits (663), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 124/145 (85%), Positives = 134/145 (92%)

Query: 1   VRVADDDTWSDIFSKVLVEHVEPQLGQGRLTVLFEYPSPEAALARTKAGDPDVAERFEVY 60
           +R++DDDTWSD+FSK+LVEHVEP LGQGRLTVL+EYPSPEAALAR KAG P+VAERFEVY
Sbjct: 206 IRISDDDTWSDLFSKLLVEHVEPHLGQGRLTVLYEYPSPEAALARVKAGQPEVAERFEVY 265

Query: 61  ACGVELANGFGELTDAAEQRHRFTAAMDEKARRYGERYPLDDDFLAAVGQMPEASGVALG 120
           ACGVELANGFGELTDAAEQR RF   M EK RRYGERYPLD+DFLAAV +MP+ASGVALG
Sbjct: 266 ACGVELANGFGELTDAAEQRRRFEQDMTEKQRRYGERYPLDEDFLAAVAEMPQASGVALG 325

Query: 121 FDRLVMLASGAPRIDQVVWTPPAGE 145
           FDRLVMLASGA RIDQVVWTPPAGE
Sbjct: 326 FDRLVMLASGAARIDQVVWTPPAGE 350


>ref|NP_771027.1| lysyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
 dbj|BAC49652.1| lysyl-tRNA synthetase [Bradyrhizobium japonicum USDA 110]
          Length = 354

 Score =  259 bits (661), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 127/145 (87%), Positives = 131/145 (90%)

Query: 1   VRVADDDTWSDIFSKVLVEHVEPQLGQGRLTVLFEYPSPEAALARTKAGDPDVAERFEVY 60
           +RVA DDTWSDIFSKVLVEHVEP LGQGRLT+LFEYPSPEAALAR KAGDP VAERFEVY
Sbjct: 205 IRVAGDDTWSDIFSKVLVEHVEPHLGQGRLTILFEYPSPEAALARVKAGDPRVAERFEVY 264

Query: 61  ACGVELANGFGELTDAAEQRHRFTAAMDEKARRYGERYPLDDDFLAAVGQMPEASGVALG 120
           ACGVELANGFGELTDA EQR RFT +M EK RRYGE YPLD+DFLAAV  MPEASGVALG
Sbjct: 265 ACGVELANGFGELTDAEEQRRRFTESMAEKQRRYGEAYPLDEDFLAAVAAMPEASGVALG 324

Query: 121 FDRLVMLASGAPRIDQVVWTPPAGE 145
           FDRLVMLASGA RIDQVVWTPPA E
Sbjct: 325 FDRLVMLASGATRIDQVVWTPPANE 349


>ref|YP_486568.1| tRNA synthetase, class II (D, K and N) [Rhodopseudomonas palustris
           HaA2]
 gb|ABD07657.1| tRNA synthetase, class II (D, K and N) [Rhodopseudomonas palustris
           HaA2]
          Length = 351

 Score =  258 bits (660), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 126/140 (90%), Positives = 133/140 (95%)

Query: 6   DDTWSDIFSKVLVEHVEPQLGQGRLTVLFEYPSPEAALARTKAGDPDVAERFEVYACGVE 65
           DD WSDIFSKVLVEHVEP+LG+GR+TVL +YP+PEAALARTKAGDP VAERFEVYACGVE
Sbjct: 210 DDNWSDIFSKVLVEHVEPRLGEGRMTVLCDYPAPEAALARTKAGDPRVAERFEVYACGVE 269

Query: 66  LANGFGELTDAAEQRHRFTAAMDEKARRYGERYPLDDDFLAAVGQMPEASGVALGFDRLV 125
           LANGFGELTDAAEQR RFTAAMDEK RRYGERYPLD+DFLAAVGQMPEASGVALGFDRLV
Sbjct: 270 LANGFGELTDAAEQRARFTAAMDEKQRRYGERYPLDEDFLAAVGQMPEASGVALGFDRLV 329

Query: 126 MLASGAPRIDQVVWTPPAGE 145
           MLA+GA  IDQVVWTPPAGE
Sbjct: 330 MLAAGATSIDQVVWTPPAGE 349


>ref|YP_569636.1| lysine--tRNA ligase [Rhodopseudomonas palustris BisB5]
 gb|ABE39735.1| Lysine--tRNA ligase [Rhodopseudomonas palustris BisB5]
          Length = 351

 Score =  251 bits (640), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 132/140 (94%)

Query: 6   DDTWSDIFSKVLVEHVEPQLGQGRLTVLFEYPSPEAALARTKAGDPDVAERFEVYACGVE 65
           DD WSDIFSKVLV+H+EP+LG+GRLTVL EYP+PEAALARTKA DP VAERFEVYACGVE
Sbjct: 210 DDNWSDIFSKVLVDHIEPRLGEGRLTVLCEYPAPEAALARTKADDPRVAERFEVYACGVE 269

Query: 66  LANGFGELTDAAEQRHRFTAAMDEKARRYGERYPLDDDFLAAVGQMPEASGVALGFDRLV 125
           LANGFGELTDAAEQR RFTA+MDEK RRYGERYPLD+DFLAAVG+MPEASGVALGFDRLV
Sbjct: 270 LANGFGELTDAAEQRLRFTASMDEKERRYGERYPLDEDFLAAVGRMPEASGVALGFDRLV 329

Query: 126 MLASGAPRIDQVVWTPPAGE 145
           MLA+GA RIDQVVWTPPA E
Sbjct: 330 MLAAGAMRIDQVVWTPPADE 349


>ref|YP_532675.1| lysine--tRNA ligase [Rhodopseudomonas palustris BisB18]
 gb|ABD88356.1| Lysine--tRNA ligase [Rhodopseudomonas palustris BisB18]
          Length = 350

 Score =  249 bits (635), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 121/144 (84%), Positives = 131/144 (90%)

Query: 1   VRVADDDTWSDIFSKVLVEHVEPQLGQGRLTVLFEYPSPEAALARTKAGDPDVAERFEVY 60
           V+V+DDD WSDIFSK+LVEH+EP LGQG+LTVL EYP+PEAALART   DP VAERFEVY
Sbjct: 205 VKVSDDDDWSDIFSKILVEHIEPNLGQGQLTVLCEYPAPEAALARTLPSDPRVAERFEVY 264

Query: 61  ACGVELANGFGELTDAAEQRHRFTAAMDEKARRYGERYPLDDDFLAAVGQMPEASGVALG 120
           ACGVELANGFGELTDA EQR RFT AMDEK RRYGERYPLD++FL AVGQMPEASGVALG
Sbjct: 265 ACGVELANGFGELTDAQEQRARFTKAMDEKQRRYGERYPLDEEFLEAVGQMPEASGVALG 324

Query: 121 FDRLVMLASGAPRIDQVVWTPPAG 144
           FDRLVMLA+GA RID+VVWTPPAG
Sbjct: 325 FDRLVMLAAGARRIDEVVWTPPAG 348