BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0062.p (298 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769271.1| chorismate synthase [Bradyrhizobium japonicum U... 571 e-161 emb|CAL76004.1| chorismate synthase (5-enolpyruvylshikimate-3-ph... 548 e-154 ref|YP_001204241.2| chorismate synthase [Bradyrhizobium sp. ORS ... 548 e-154 ref|YP_001238541.1| chorismate synthase [Bradyrhizobium sp. BTAi... 543 e-153 ref|YP_576111.1| chorismate synthase [Nitrobacter hamburgensis X... 536 e-150 >ref|NP_769271.1| chorismate synthase [Bradyrhizobium japonicum USDA 110] sp|Q89RY1.1|AROC_BRAJA RecName: Full=Chorismate synthase; AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase dbj|BAC47896.1| chorismate synthase [Bradyrhizobium japonicum USDA 110] Length = 362 Score = 571 bits (1472), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/298 (92%), Positives = 289/298 (96%) Query: 1 VKILSGVMAHPESGGQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 60 VKILSGVMAHPE+G QVTTGTPI LLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR Sbjct: 65 VKILSGVMAHPETGVQVTTGTPIGLLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 124 Query: 61 DYRGGGRSSARETATRVAAGAIARKVLPEVKVRGALVQMGPHKIDREKWDWDEIANNPFF 120 DYRGGGRSSARETATRVAAGAIARKVLP+VKVRGALVQMGPHKIDREKWDWDE+A NPFF Sbjct: 125 DYRGGGRSSARETATRVAAGAIARKVLPDVKVRGALVQMGPHKIDREKWDWDEVARNPFF 184 Query: 121 CPDKDKAAFFESYLDGIRKSGSSIGAVIEVTAEGVPAGLGAPIYAKLDSDLAAAMMSINA 180 CPDKDKAAFFE+YLDGIRKSGSSIGAV+E+ AEGVPAGLGAPIYAKLDSDLA AMM+INA Sbjct: 185 CPDKDKAAFFETYLDGIRKSGSSIGAVLEIVAEGVPAGLGAPIYAKLDSDLAGAMMTINA 244 Query: 181 VKGVEIGAGFGAAELSGEENADEMRTGNNGTRFLSNHAGGVLGGISTGQPVVVRFAVKPT 240 VKGVEIGAGFGAAEL+GEENADEMRTGN+GTRFLSNHAGGVLGGISTGQPVVVRFAVKPT Sbjct: 245 VKGVEIGAGFGAAELTGEENADEMRTGNDGTRFLSNHAGGVLGGISTGQPVVVRFAVKPT 304 Query: 241 SSILTTRRTVDRKGADTDILTKGRHDPCVGIRAVPVGEAMMACVLADHFLRDRGQTGR 298 SSIL R TVDR+GADT+I+TKGRHDPCVGIRAVPVGEAMMACVLADHF+RDRGQ GR Sbjct: 305 SSILQPRLTVDRQGADTEIMTKGRHDPCVGIRAVPVGEAMMACVLADHFIRDRGQVGR 362 >emb|CAL76004.1| chorismate synthase (5-enolpyruvylshikimate-3-phosphate phospholyase) [Bradyrhizobium sp. ORS 278] Length = 366 Score = 548 bits (1412), Expect = e-154, Method: Compositional matrix adjust. Identities = 264/297 (88%), Positives = 282/297 (94%) Query: 1 VKILSGVMAHPESGGQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 60 VKILSGVMA P++G QVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR Sbjct: 70 VKILSGVMADPDTGAQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 129 Query: 61 DYRGGGRSSARETATRVAAGAIARKVLPEVKVRGALVQMGPHKIDREKWDWDEIANNPFF 120 DYRGGGRSSARETATRVAAGAIARK++ VKVRGALVQMGPHKIDR+KWDWDEIA NPFF Sbjct: 130 DYRGGGRSSARETATRVAAGAIARKIIAGVKVRGALVQMGPHKIDRDKWDWDEIARNPFF 189 Query: 121 CPDKDKAAFFESYLDGIRKSGSSIGAVIEVTAEGVPAGLGAPIYAKLDSDLAAAMMSINA 180 CPDKDKAAFFE YLDGIRKSGSSIGAV+E+TAEGVPAGLGAP+Y KLD+DLAAAMMSINA Sbjct: 190 CPDKDKAAFFEDYLDGIRKSGSSIGAVLEITAEGVPAGLGAPLYGKLDADLAAAMMSINA 249 Query: 181 VKGVEIGAGFGAAELSGEENADEMRTGNNGTRFLSNHAGGVLGGISTGQPVVVRFAVKPT 240 VKGVEIGAGFGAAEL+GE NADEMR+ N+GTRFLSNHAGG+LGGI+TGQP+VVRFAVKPT Sbjct: 250 VKGVEIGAGFGAAELTGEANADEMRSANDGTRFLSNHAGGILGGIATGQPIVVRFAVKPT 309 Query: 241 SSILTTRRTVDRKGADTDILTKGRHDPCVGIRAVPVGEAMMACVLADHFLRDRGQTG 297 SSILT R+TVDR G +T+ILTKGRHDPCVGIRAVPVGEAMMACVLADH LR RGQ G Sbjct: 310 SSILTPRQTVDRAGHETEILTKGRHDPCVGIRAVPVGEAMMACVLADHLLRHRGQVG 366 >ref|YP_001204241.2| chorismate synthase [Bradyrhizobium sp. ORS 278] sp|A4YQ28.2|AROC_BRASO RecName: Full=Chorismate synthase; AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase Length = 361 Score = 548 bits (1411), Expect = e-154, Method: Compositional matrix adjust. Identities = 264/297 (88%), Positives = 282/297 (94%) Query: 1 VKILSGVMAHPESGGQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 60 VKILSGVMA P++G QVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR Sbjct: 65 VKILSGVMADPDTGAQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 124 Query: 61 DYRGGGRSSARETATRVAAGAIARKVLPEVKVRGALVQMGPHKIDREKWDWDEIANNPFF 120 DYRGGGRSSARETATRVAAGAIARK++ VKVRGALVQMGPHKIDR+KWDWDEIA NPFF Sbjct: 125 DYRGGGRSSARETATRVAAGAIARKIIAGVKVRGALVQMGPHKIDRDKWDWDEIARNPFF 184 Query: 121 CPDKDKAAFFESYLDGIRKSGSSIGAVIEVTAEGVPAGLGAPIYAKLDSDLAAAMMSINA 180 CPDKDKAAFFE YLDGIRKSGSSIGAV+E+TAEGVPAGLGAP+Y KLD+DLAAAMMSINA Sbjct: 185 CPDKDKAAFFEDYLDGIRKSGSSIGAVLEITAEGVPAGLGAPLYGKLDADLAAAMMSINA 244 Query: 181 VKGVEIGAGFGAAELSGEENADEMRTGNNGTRFLSNHAGGVLGGISTGQPVVVRFAVKPT 240 VKGVEIGAGFGAAEL+GE NADEMR+ N+GTRFLSNHAGG+LGGI+TGQP+VVRFAVKPT Sbjct: 245 VKGVEIGAGFGAAELTGEANADEMRSANDGTRFLSNHAGGILGGIATGQPIVVRFAVKPT 304 Query: 241 SSILTTRRTVDRKGADTDILTKGRHDPCVGIRAVPVGEAMMACVLADHFLRDRGQTG 297 SSILT R+TVDR G +T+ILTKGRHDPCVGIRAVPVGEAMMACVLADH LR RGQ G Sbjct: 305 SSILTPRQTVDRAGHETEILTKGRHDPCVGIRAVPVGEAMMACVLADHLLRHRGQVG 361 >ref|YP_001238541.1| chorismate synthase [Bradyrhizobium sp. BTAi1] sp|A5EEP1.1|AROC_BRASB RecName: Full=Chorismate synthase; AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase gb|ABQ34635.1| chorismate synthase [Bradyrhizobium sp. BTAi1] Length = 361 Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust. Identities = 263/297 (88%), Positives = 280/297 (94%) Query: 1 VKILSGVMAHPESGGQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 60 VKILSGVM P++G QVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR Sbjct: 65 VKILSGVMPDPDTGAQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 124 Query: 61 DYRGGGRSSARETATRVAAGAIARKVLPEVKVRGALVQMGPHKIDREKWDWDEIANNPFF 120 DYRGGGRSSARETATRVAAGAIARK+L VKVRGALVQMGPHKIDR KWDWDEIA NPFF Sbjct: 125 DYRGGGRSSARETATRVAAGAIARKILAGVKVRGALVQMGPHKIDRAKWDWDEIARNPFF 184 Query: 121 CPDKDKAAFFESYLDGIRKSGSSIGAVIEVTAEGVPAGLGAPIYAKLDSDLAAAMMSINA 180 CPDKDKAAFFE YLDGIRKSGSSIGAV+E+TAEGVPAGLGAP+Y KLD+DLAAAMMSINA Sbjct: 185 CPDKDKAAFFEDYLDGIRKSGSSIGAVLEITAEGVPAGLGAPLYGKLDADLAAAMMSINA 244 Query: 181 VKGVEIGAGFGAAELSGEENADEMRTGNNGTRFLSNHAGGVLGGISTGQPVVVRFAVKPT 240 VKGVEIGAGF AAEL+GEENADEMR+ N+GTRFLSN+AGG+LGGI+TGQP+VVRFAVKPT Sbjct: 245 VKGVEIGAGFAAAELTGEENADEMRSANDGTRFLSNNAGGILGGIATGQPIVVRFAVKPT 304 Query: 241 SSILTTRRTVDRKGADTDILTKGRHDPCVGIRAVPVGEAMMACVLADHFLRDRGQTG 297 SSILT R+TVDR G +T+ILTKGRHDPCVGIRAVPVGEAMMACVLADH LR RGQ G Sbjct: 305 SSILTPRQTVDRAGHETEILTKGRHDPCVGIRAVPVGEAMMACVLADHLLRHRGQVG 361 >ref|YP_576111.1| chorismate synthase [Nitrobacter hamburgensis X14] sp|Q1QQ46.1|AROC_NITHX RecName: Full=Chorismate synthase; AltName: Full=5-enolpyruvylshikimate-3-phosphate phospholyase gb|ABE61651.1| chorismate synthase [Nitrobacter hamburgensis X14] Length = 366 Score = 536 bits (1380), Expect = e-150, Method: Compositional matrix adjust. Identities = 266/302 (88%), Positives = 278/302 (92%), Gaps = 7/302 (2%) Query: 1 VKILSGVMAHPESGGQVTTGTPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 60 VKILSGVM + GQVTTG PIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR Sbjct: 65 VKILSGVME--TASGQVTTGAPIALLIENTDQRSKDYSEIKDKFRPGHADFTYEAKYGLR 122 Query: 61 DYRGGGRSSARETATRVAAGAIARKVLPEVKVRGALVQMGPHKIDREKWDWDEIANNPFF 120 DYRGGGRSSARETATRVAAGAIARK++P V VRGALVQMGPH+IDREKWDW+EIA NPFF Sbjct: 123 DYRGGGRSSARETATRVAAGAIARKIVPGVTVRGALVQMGPHRIDREKWDWNEIARNPFF 182 Query: 121 CPDKDKAAFFESYLDGIRKSGSSIGAVIEVTAEGVPAGLGAPIYAKLDSDLAAAMMSINA 180 CPDKDKAAFFESYLDGIRKSGSSIGAVIEV AEGVPAGLGAPIYAKLD DLAAA+MSINA Sbjct: 183 CPDKDKAAFFESYLDGIRKSGSSIGAVIEVVAEGVPAGLGAPIYAKLDGDLAAALMSINA 242 Query: 181 VKGVEIGAGFGAAELSGEENADEMRT-----GNNGTRFLSNHAGGVLGGISTGQPVVVRF 235 VKGVEIGAGFGAAELSGE+NADEMR+ GNNG FLSNHAGG+LGGISTGQPVV RF Sbjct: 243 VKGVEIGAGFGAAELSGEDNADEMRSSSSNMGNNGPVFLSNHAGGILGGISTGQPVVARF 302 Query: 236 AVKPTSSILTTRRTVDRKGADTDILTKGRHDPCVGIRAVPVGEAMMACVLADHFLRDRGQ 295 AVKPTSSIL+ R+TVDR GADTDI TKGRHDPCVGIRAVPVGEAM+ACVLADHFLR RGQ Sbjct: 303 AVKPTSSILSPRKTVDRNGADTDIFTKGRHDPCVGIRAVPVGEAMVACVLADHFLRHRGQ 362 Query: 296 TG 297 G Sbjct: 363 VG 364