BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0059.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_779994.1| ATP-dependent Clp protease adaptor [Rhodopseudo...   181   2e-44
ref|YP_004107731.1| ATP-dependent Clp protease adaptor protein C...   180   6e-44
ref|NP_946554.2| ATP-dependent Clp protease adaptor [Rhodopseudo...   176   9e-43
ref|YP_568454.1| ATP-dependent Clp protease adaptor [Rhodopseudo...   174   5e-42
ref|YP_001204243.1| ATP-dependent Clp protease adaptor [Bradyrhi...   174   6e-42

>ref|YP_779994.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ05014.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisA53]
          Length = 101

 Score =  181 bits (460), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 87/101 (86%), Positives = 95/101 (94%)

Query: 1   MPDTIVKPKTRTKTKVERPRLHKVILVNDDYTPREFVVTVLKGEFRMTDDQAYKVMLTAH 60
           M   +VKP T+T+TKVERP+LHKVILVNDDYTPREFVV VLK EFRMT+DQA+KVM+TAH
Sbjct: 1   MSPVVVKPTTKTRTKVERPKLHKVILVNDDYTPREFVVRVLKAEFRMTEDQAHKVMITAH 60

Query: 61  QRGVCVVAVFTRDVAETKATRATDAGRAKGYPLLFTTEPEE 101
           QRGVCVVAVFTRD+AETKATRATDAGRAKGYPLLFTTEPEE
Sbjct: 61  QRGVCVVAVFTRDIAETKATRATDAGRAKGYPLLFTTEPEE 101


>ref|YP_004107731.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
 gb|ADU42998.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris DX-1]
          Length = 101

 Score =  180 bits (456), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 86/101 (85%), Positives = 93/101 (92%)

Query: 1   MPDTIVKPKTRTKTKVERPRLHKVILVNDDYTPREFVVTVLKGEFRMTDDQAYKVMLTAH 60
           M +  +KPKT+ K KVERP+LHKVILVNDDYTPREFVV+VLK E RMT+DQAYKVMLTAH
Sbjct: 1   MSNIDLKPKTKAKIKVERPKLHKVILVNDDYTPREFVVSVLKAELRMTEDQAYKVMLTAH 60

Query: 61  QRGVCVVAVFTRDVAETKATRATDAGRAKGYPLLFTTEPEE 101
           QRGVCVV VFT+DVAETKATRATDAGRAKGYPLLFTTEPEE
Sbjct: 61  QRGVCVVGVFTKDVAETKATRATDAGRAKGYPLLFTTEPEE 101


>ref|NP_946554.2| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           CGA009]
 ref|YP_001990411.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           TIE-1]
 sp|Q6NAI2.2|CLPS1_RHOPA RecName: Full=ATP-dependent Clp protease adapter protein ClpS 1
 gb|ACE99935.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris TIE-1]
          Length = 103

 Score =  176 bits (446), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 87/103 (84%), Positives = 94/103 (91%), Gaps = 2/103 (1%)

Query: 1   MPDTIVKPKTRTKTK--VERPRLHKVILVNDDYTPREFVVTVLKGEFRMTDDQAYKVMLT 58
           M +  +KPKT+ K K  VERP+LHKVILVNDDYTPREFVV+VLKGEFRMT+DQA KVMLT
Sbjct: 1   MSNIDLKPKTKAKAKIKVERPKLHKVILVNDDYTPREFVVSVLKGEFRMTEDQATKVMLT 60

Query: 59  AHQRGVCVVAVFTRDVAETKATRATDAGRAKGYPLLFTTEPEE 101
           AHQRGVCVV VFT+DVAETKATRATDAGRAKGYPLLFTTEPEE
Sbjct: 61  AHQRGVCVVGVFTKDVAETKATRATDAGRAKGYPLLFTTEPEE 103


>ref|YP_568454.1| ATP-dependent Clp protease adaptor [Rhodopseudomonas palustris
           BisB5]
 gb|ABE38553.1| ATP-dependent Clp protease adaptor protein ClpS [Rhodopseudomonas
           palustris BisB5]
          Length = 101

 Score =  174 bits (440), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 91/101 (90%)

Query: 1   MPDTIVKPKTRTKTKVERPRLHKVILVNDDYTPREFVVTVLKGEFRMTDDQAYKVMLTAH 60
           M   + KP T+ K K+ERP+LHKVILVNDD+TPREFVV +LK EFRMT++QAYKVMLTAH
Sbjct: 1   MGKIVTKPSTKAKPKLERPKLHKVILVNDDFTPREFVVMILKAEFRMTEEQAYKVMLTAH 60

Query: 61  QRGVCVVAVFTRDVAETKATRATDAGRAKGYPLLFTTEPEE 101
           QRGVCVVAVFT+DVAETKATRATDAGR KGYPLLFTTEPEE
Sbjct: 61  QRGVCVVAVFTKDVAETKATRATDAGRVKGYPLLFTTEPEE 101


>ref|YP_001204243.1| ATP-dependent Clp protease adaptor [Bradyrhizobium sp. ORS 278]
 emb|CAL76006.1| ATP-dependent Clp protease adaptor protein clpS 2 [Bradyrhizobium
           sp. ORS 278]
          Length = 115

 Score =  174 bits (440), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 82/101 (81%), Positives = 93/101 (92%)

Query: 1   MPDTIVKPKTRTKTKVERPRLHKVILVNDDYTPREFVVTVLKGEFRMTDDQAYKVMLTAH 60
           M D + KPKT+ +TKVERPRL+KVILVNDD+TPR+FVV +LK EFRMT+DQAYKVM+TAH
Sbjct: 15  MNDAVTKPKTKVRTKVERPRLYKVILVNDDFTPRDFVVMILKAEFRMTEDQAYKVMITAH 74

Query: 61  QRGVCVVAVFTRDVAETKATRATDAGRAKGYPLLFTTEPEE 101
           + GVCVVAVFT+DVAETKATRATDAGRAKGYPLLFT EPEE
Sbjct: 75  KLGVCVVAVFTKDVAETKATRATDAGRAKGYPLLFTIEPEE 115