BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0056.p (410 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769288.1| RNA methyltransferase [Bradyrhizobium japonicum... 595 e-168 ref|YP_779996.1| RNA methyltransferase [Rhodopseudomonas palustr... 585 e-165 ref|YP_571427.1| RNA methyltransferase [Rhodopseudomonas palustr... 565 e-159 ref|YP_531027.1| RNA methyltransferase [Rhodopseudomonas palustr... 560 e-157 ref|YP_001238547.1| putative RNA methyltransferase [Bradyrhizobi... 557 e-156 >ref|NP_769288.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110] sp|Q89RW4.1|Y2648_BRAJA RecName: Full=Uncharacterized RNA methyltransferase bll2648 dbj|BAC47913.1| RNA methyltransferase [Bradyrhizobium japonicum USDA 110] Length = 415 Score = 595 bits (1535), Expect = e-168, Method: Compositional matrix adjust. Identities = 304/415 (73%), Positives = 344/415 (82%), Gaps = 5/415 (1%) Query: 1 VAELLTIDHVGHRGDGVAIEGSQPIFVPYALAGETVEVDDVPGNHPDRRRLLRVTRQSPE 60 + E L IDHVGHRGDGVA+ + I+VPYAL GETVEVD V GNHPDRR+LL V SPE Sbjct: 1 MVERLRIDHVGHRGDGVALGAGEAIYVPYALGGETVEVDHVAGNHPDRRKLLAVDVASPE 60 Query: 61 RIAPFCPHFGVCGGCAIQHWNDEGYHAWKRNIVVETLAQAKIAADVTPLIDAHGAGRRRI 120 R+APFCPHFG+CGGCAIQHW E YHAWKR+IVVETLAQA I +V PL+DAHG GRRR+ Sbjct: 61 RVAPFCPHFGICGGCAIQHWAAEPYHAWKRSIVVETLAQAGIDCEVAPLVDAHGVGRRRV 120 Query: 121 TLHGRMGTHEVLKVGYAAAGSHDIIPVDRCPILDPALDGALEAAWATAEPL---IVIGKP 177 TLHGR GTH++LKVG++AA SHD+IP+ RCPILDPALDGAL+AAWA AEPL + + KP Sbjct: 121 TLHGRFGTHDILKVGFSAASSHDVIPIHRCPILDPALDGALDAAWALAEPLTSKMPVTKP 180 Query: 178 LDIQVTATVNGLDIDVRGSGALPTSLITTLSRVAEKHRLARLTRHGELVLQRGSPEIAIG 237 LDIQVTAT NGLD+DVRGSG LPT L+T LSRVAE+HRLARLTRHGELVLQR P + +G Sbjct: 181 LDIQVTATTNGLDVDVRGSGPLPTPLVTALSRVAEQHRLARLTRHGELVLQRLPPTVKMG 240 Query: 238 KAMVVLPPGSFLQATVKGEDTLAALVREHCGRAKHIADLFCGVGPFALRLAEKARI-AXD 296 + V LPPGSFLQATV GE+TLA+LV E G+AK + DLFCGVGPFALRLAEKAR+ A D Sbjct: 241 RTEVTLPPGSFLQATVAGEETLASLVAERVGKAKEVLDLFCGVGPFALRLAEKARVTAYD 300 Query: 297 AGAITALQKAAQT-TPGLKPLKAEARDLFRRPLMPQELRDYDAVVFDPPRQGAQAQVTQL 355 + A A TPGLKP++ E RDLFRRPL+PQELRD+DAVVFDPPRQGAQAQ +L Sbjct: 301 SDAGAVAALAKAARTPGLKPIRCEPRDLFRRPLVPQELRDFDAVVFDPPRQGAQAQALKL 360 Query: 356 AASKVPVIVAVSCNAATFARDAKILIDGGYKIAAVTPVDQFRHTAHVELVARFAR 410 AAS VPVIVAVSCN ATFARDA++LIDGGY+I V PVDQFRHT HVELVARFAR Sbjct: 361 AASTVPVIVAVSCNVATFARDARLLIDGGYRIDGVVPVDQFRHTPHVELVARFAR 415 >ref|YP_779996.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53] gb|ABJ05016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas palustris BisA53] Length = 411 Score = 585 bits (1508), Expect = e-165, Method: Compositional matrix adjust. Identities = 291/413 (70%), Positives = 334/413 (80%), Gaps = 5/413 (1%) Query: 1 VAELLTIDHVGHRGDGVAIEGSQPIFVPYALAGETVEVDDVPGNHPDRRRLLRVTRQSPE 60 + E L IDHVGHRGDGVA+ I+VP+AL GETV V+ V G HPDRR LL V + S E Sbjct: 1 MTETLVIDHVGHRGDGVALRDGASIYVPFALGGETVAVEPVAG-HPDRRALLSVEQPSAE 59 Query: 61 RIAPFCPHFGVCGGCAIQHWNDEGYHAWKRNIVVETLAQAKIAADVTPLIDAHGAGRRRI 120 RI PFC HFGVCGGCAIQHW + Y AWKR +VVE L+QA I +V PLIDAHG GRRRI Sbjct: 60 RITPFCKHFGVCGGCAIQHWRADRYQAWKRELVVEALSQAGIDCEVAPLIDAHGQGRRRI 119 Query: 121 TLHGRMGTHEVLKVGYAAAGSHDIIPVDRCPILDPALDGALEAAWATAEPLIVIGKPLDI 180 TLH R GTHEVLKVG+AAAGSHDI+P+DRCPILDPALDGAL+AAWA AEPL KPLDI Sbjct: 120 TLHARKGTHEVLKVGFAAAGSHDIVPIDRCPILDPALDGALDAAWALAEPLTTEAKPLDI 179 Query: 181 QVTATVNGLDIDVRGSGALPTSLITTLSRVAEKHRLARLTRHGELVLQRGSPEIAIGKAM 240 QVTA GLD+D+RGSG + + ++TTLS++AE+HRLARLTRHGELVL R P I +G A Sbjct: 180 QVTAADEGLDVDIRGSGPVSSRMLTTLSKLAEQHRLARLTRHGELVLMRTPPTIQVGAAR 239 Query: 241 VVLPPGSFLQATVKGEDTLAALVREHCGRAKHIADLFCGVGPFALRLAEKARIA---XDA 297 + LPPG+FLQAT GE+TLA LV E CG+AK++ DLFCGVGPFALRLA KAR+A +A Sbjct: 240 LTLPPGAFLQATRAGEETLADLVSERCGKAKNVVDLFCGVGPFALRLATKARVAAYDSEA 299 Query: 298 GAITALQKAAQTTPGLKPLKAEARDLFRRPLMPQELRDYDAVVFDPPRQGAQAQVTQLAA 357 AI ALQKAA TPGLKP+ E RDLFRRPL+PQ+L D DAVVFDPPRQGAQAQ QLA Sbjct: 300 SAIAALQKAA-GTPGLKPMTIEIRDLFRRPLVPQQLEDVDAVVFDPPRQGAQAQCQQLAK 358 Query: 358 SKVPVIVAVSCNAATFARDAKILIDGGYKIAAVTPVDQFRHTAHVELVARFAR 410 S+VP+IVAVSCNAATFARDA++L+DGGY+I +TPVDQFRHT HVELVARF + Sbjct: 359 SRVPLIVAVSCNAATFARDARLLLDGGYRIDQLTPVDQFRHTPHVELVARFRK 411 >ref|YP_571427.1| RNA methyltransferase [Rhodopseudomonas palustris BisB5] gb|ABE41526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas palustris BisB5] Length = 412 Score = 565 bits (1456), Expect = e-159, Method: Compositional matrix adjust. Identities = 290/408 (71%), Positives = 329/408 (80%), Gaps = 4/408 (0%) Query: 1 VAELLTIDHVGHRGDGVAIEGSQPIFVPYALAGETVEVDDVPGNHPDRRRLLRVTRQSPE 60 + E+L IDHVGHRGDGV++ ++VPYAL GETVE V G HPDRR+LLRV R SP+ Sbjct: 1 MTEILAIDHVGHRGDGVSLAQGGAVYVPYALGGETVEAAPVAG-HPDRRKLLRVDRASPQ 59 Query: 61 RIAPFCPHFGVCGGCAIQHWNDEGYHAWKRNIVVETLAQAKIAADVTPLIDAHGAGRRRI 120 RIAPFCPHFG+CGGCAIQHW + Y AWKR++V+ETL QAKI V PLIDAHGAGRRRI Sbjct: 60 RIAPFCPHFGICGGCAIQHWQPDAYQAWKRDLVIETLRQAKIDCAVDPLIDAHGAGRRRI 119 Query: 121 TLHGRMGTHEVLKVGYAAAGSHDIIPVDRCPILDPALDGALEAAWATAEPLIVIGKPLDI 180 TLH R GTH+VLKVG++A SHD+I +D CPILDPALDGA+EAAWA AE L IGKPLDI Sbjct: 120 TLHARKGTHDVLKVGFSAVASHDVIAIDACPILDPALDGAIEAAWALAETLTFIGKPLDI 179 Query: 181 QVTATVNGLDIDVRGSGALPTSLITTLSRVAEKHRLARLTRHGELVLQRGSPEIAIGKAM 240 QVTA NGLD+DVRGSG LP+ +IT LSR+AE+H LARLTRHGELVL R P + IG+A Sbjct: 180 QVTAAENGLDVDVRGSGPLPSKMITALSRIAEQHNLARLTRHGELVLMRTPPTVMIGQAR 239 Query: 241 VVLPPGSFLQATVKGEDTLAALVREHCGRAKHIADLFCGVGPFALRLAEKARIA---XDA 297 V LPPG+FLQAT GE TLA L RAK IADLFCGVGPFALRLA KAR+ DA Sbjct: 240 VTLPPGAFLQATALGEQTLAELALAQIQRAKLIADLFCGVGPFALRLAAKARVFACDSDA 299 Query: 298 GAITALQKAAQTTPGLKPLKAEARDLFRRPLMPQELRDYDAVVFDPPRQGAQAQVTQLAA 357 A+ ALQKAAQ T GLKP+KAE RDLFRRPL P EL D+D V+FDPPRQGAQAQ QLAA Sbjct: 300 PAVNALQKAAQATSGLKPIKAEPRDLFRRPLAPPELLDFDVVLFDPPRQGAQAQAAQLAA 359 Query: 358 SKVPVIVAVSCNAATFARDAKILIDGGYKIAAVTPVDQFRHTAHVELV 405 S+VP+I+AVSCNA TFARDA++LIDGGY++ VTPVDQFRHT HVELV Sbjct: 360 SRVPLIIAVSCNAQTFARDARLLIDGGYRLEKVTPVDQFRHTPHVELV 407 >ref|YP_531027.1| RNA methyltransferase [Rhodopseudomonas palustris BisB18] gb|ABD86708.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Rhodopseudomonas palustris BisB18] Length = 412 Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust. Identities = 298/412 (72%), Positives = 332/412 (80%), Gaps = 3/412 (0%) Query: 1 VAELLTIDHVGHRGDGVAIEGSQPIFVPYALAGETVEVDDVPGNHPDRRRLLRVTRQSPE 60 + E L IDHVGHRGDGVA + + ++VPY L GETVEVD V G HPDRR LLRV + S E Sbjct: 1 MTETLIIDHVGHRGDGVATQRGEALYVPYTLGGETVEVDAVAG-HPDRRVLLRVDQPSAE 59 Query: 61 RIAPFCPHFGVCGGCAIQHWNDEGYHAWKRNIVVETLAQAKIAADVTPLIDAHGAGRRRI 120 RIAPFC HFGVCGGCAIQHW E Y AWKR +V+ LAQAKI +V PLIDAHGAGRRRI Sbjct: 60 RIAPFCKHFGVCGGCAIQHWQAEPYQAWKRQLVIAALAQAKIDCEVAPLIDAHGAGRRRI 119 Query: 121 TLHGRMGTHEVLKVGYAAAGSHDIIPVDRCPILDPALDGALEAAWATAEPLIVIGKPLDI 180 TLH R GTHEVLKVG+ AAGSHDI+P+D CPILDP LDGALEAAWA AE LI GKPLDI Sbjct: 120 TLHARKGTHEVLKVGFTAAGSHDIVPIDACPILDPGLDGALEAAWALAEALIETGKPLDI 179 Query: 181 QVTATVNGLDIDVRGSGALPTSLITTLSRVAEKHRLARLTRHGELVLQRGSPEIAIGKAM 240 QVTA NGLD+D+RGSG LP+ LI LSR+AE+H+LARLTRHGELVL R P I+IG A Sbjct: 180 QVTAADNGLDVDIRGSGPLPSKLIAALSRLAEQHKLARLTRHGELVLMRKPPVISIGPAH 239 Query: 241 VVLPPGSFLQATVKGEDTLAALVREHCGRAKHIADLFCGVGPFALRLAEKARI-AXDAG- 298 + LPPG+FLQAT GE TLAAL E CG+AK I DLFCGVGPFALRLA KA++ A D+ Sbjct: 240 LTLPPGAFLQATAAGEATLAALAIERCGKAKLIVDLFCGVGPFALRLAAKAKVLAYDSEP 299 Query: 299 AITALQKAAQTTPGLKPLKAEARDLFRRPLMPQELRDYDAVVFDPPRQGAQAQVTQLAAS 358 A A +AA TPGLKPL AE RDLFRRPL+ QELRD DAVVFDPPRQGAQAQ +LAA Sbjct: 300 AAIAALQAAAKTPGLKPLTAEVRDLFRRPLVTQELRDVDAVVFDPPRQGAQAQAEKLAAG 359 Query: 359 KVPVIVAVSCNAATFARDAKILIDGGYKIAAVTPVDQFRHTAHVELVARFAR 410 KV +VAVSCNAATFARDA+ILIDGGY+I VTPVDQFRHT HVELVA+F++ Sbjct: 360 KVATVVAVSCNAATFARDARILIDGGYQIGTVTPVDQFRHTPHVELVAKFSK 411 >ref|YP_001238547.1| putative RNA methyltransferase [Bradyrhizobium sp. BTAi1] gb|ABQ34641.1| 23S rRNA m(5)U-1939 methyltransferase [Bradyrhizobium sp. BTAi1] Length = 411 Score = 557 bits (1436), Expect = e-156, Method: Compositional matrix adjust. Identities = 298/413 (72%), Positives = 334/413 (80%), Gaps = 5/413 (1%) Query: 1 VAELLTIDHVGHRGDGVAIEGSQPIFVPYALAGETVEVDDVPGNHPDRRRLLRVTRQSPE 60 + + L IDHVGHRGDGV++ + ++VPY LAGETVE +PG HPDRR+LL V S E Sbjct: 1 MVDRLVIDHVGHRGDGVSLSSGETLYVPYTLAGETVEASAIPG-HPDRRKLLAVETPSAE 59 Query: 61 RIAPFCPHFGVCGGCAIQHWNDEGYHAWKRNIVVETLAQAKIAADVTPLIDAHGAGRRRI 120 RIAPFCPHFGVCGGCAIQHW + Y WKRNIVVETL K+ +V LIDAHGAGRRR Sbjct: 60 RIAPFCPHFGVCGGCAIQHWATQPYQQWKRNIVVETLRATKVDCEVADLIDAHGAGRRRA 119 Query: 121 TLHGRMGTHEVLKVGYAAAGSHDIIPVDRCPILDPALDGALEAAWATAEPLIVIGKPLDI 180 T H RMGTH+VL+VG++A GSHDI+P+DRCPILDPALDGALEAAWA AE L GKPLDI Sbjct: 120 TFHARMGTHDVLRVGFSATGSHDIVPIDRCPILDPALDGALEAAWALAEALKPTGKPLDI 179 Query: 181 QVTATVNGLDIDVRGSGALPTSLITTLSRVAEKHRLARLTRHGELVLQRGSPEIAIGKAM 240 Q TAT NGLDIDVRGSG LP + + LSR+AE+HRLARLTRHGELVL R +P + +G A Sbjct: 180 QATATHNGLDIDVRGSGPLPPARVAALSRLAEQHRLARLTRHGELVLMRNAPTVTMGTAQ 239 Query: 241 VVLPPGSFLQATVKGEDTLAALVREHCGRAKHIADLFCGVGPFALRLAEKARIA---XDA 297 V LPPGSFLQATV+GE+TLA LV E +AKH+ADLFCGVGPFALRLA +AR+ DA Sbjct: 240 VTLPPGSFLQATVQGEETLARLVLERTAKAKHVADLFCGVGPFALRLAARARVTAMDNDA 299 Query: 298 GAITALQKAAQTTPGLKPLKAEARDLFRRPLMPQELRDYDAVVFDPPRQGAQAQVTQLAA 357 G+I ALQKAA PGLKP+KAEARDLFRRPLMP ELRD DAVVFDPPRQGAQAQ QLAA Sbjct: 300 GSIAALQKAAG-CPGLKPIKAEARDLFRRPLMPAELRDIDAVVFDPPRQGAQAQAKQLAA 358 Query: 358 SKVPVIVAVSCNAATFARDAKILIDGGYKIAAVTPVDQFRHTAHVELVARFAR 410 SKVPVIVAVSCN TFARD ++LIDGGYK+ V PVDQFRHT HVELVAR AR Sbjct: 359 SKVPVIVAVSCNVTTFARDMRLLIDGGYKLETVVPVDQFRHTPHVELVARLAR 411