BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0055.p (246 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_769289.1| hypothetical protein bll2649 [Bradyrhizobium ja... 366 2e-99 ref|YP_531029.1| hemolysin A [Rhodopseudomonas palustris BisB18]... 363 1e-98 ref|YP_002289870.1| ribosomal RNA large subunit methyltransferas... 350 1e-94 ref|YP_571425.1| hemolysin A [Rhodopseudomonas palustris BisB5] ... 349 2e-94 ref|ZP_08628762.1| FtsJ-like RNA binding methyltransferase [Brad... 348 5e-94 >ref|NP_769289.1| hypothetical protein bll2649 [Bradyrhizobium japonicum USDA 110] dbj|BAC47914.1| bll2649 [Bradyrhizobium japonicum USDA 110] Length = 245 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 191/239 (79%), Positives = 208/239 (87%), Gaps = 7/239 (2%) Query: 15 KRIDVLLVERGLFESRARARAAIDAGLVTADGKQIVKASEIVAPGAALSAEPAHPYVSRG 74 KR D+LLVERGLFESRARARAAI+AGLVTAD KQ+ K SE +A A + AEPAHPYVSRG Sbjct: 7 KRADILLVERGLFESRARARAAIEAGLVTADDKQVTKPSETIAEDAVIQAEPAHPYVSRG 66 Query: 75 GVKLAGALEHYPIDVEGHVCLDVGX-------VLLANGASLVFAIDVGHGQLHPSLQGHP 127 GVKLAGALE YPI++E HVCLDVG VLLANGASLVFAIDVG QLHPSL+ HP Sbjct: 67 GVKLAGALERYPIEIEDHVCLDVGASTGGFTEVLLANGASLVFAIDVGTSQLHPSLRDHP 126 Query: 128 KIVSMEATDIRSFEGKRLPARPDIVVIDVSFISLKLVLPVALSLAAAPMHLLALIKPQFE 187 KIVSME TDIR++EG+RLPARPD+VVIDVSFISLK VLPVALSLAAAPM LLALIKPQFE Sbjct: 127 KIVSMEETDIRAYEGRRLPARPDVVVIDVSFISLKAVLPVALSLAAAPMSLLALIKPQFE 186 Query: 188 AARKHSKRGVIRNAMVHQEICDDIAAFAASQGCTDIQVFPSSIPGGDGNIEFFLGARRG 246 A RKH+K+G+IR+A VHQ+ICDDIAAFAAS GCTDI VFPS I GGDGNIEFFLGARRG Sbjct: 187 AERKHNKKGIIRDAAVHQQICDDIAAFAASLGCTDIAVFPSPITGGDGNIEFFLGARRG 245 >ref|YP_531029.1| hemolysin A [Rhodopseudomonas palustris BisB18] gb|ABD86710.1| hemolysin A [Rhodopseudomonas palustris BisB18] Length = 246 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 185/239 (77%), Positives = 202/239 (84%), Gaps = 7/239 (2%) Query: 15 KRIDVLLVERGLFESRARARAAIDAGLVTADGKQIVKASEIVAPGAALSAEPAHPYVSRG 74 KR DVLLVERGLFESRARA+AAI+AGLV ADGK + KASE VA A L A PAHPYVSRG Sbjct: 7 KRADVLLVERGLFESRARAQAAIEAGLVFADGKLVGKASEGVAADAELQAAPAHPYVSRG 66 Query: 75 GVKLAGALEHYPIDVEGHVCLDVGX-------VLLANGASLVFAIDVGHGQLHPSLQGHP 127 GVKLAGALE YPI++EGHVCLDVG VLL NGA LVFA+DVGHGQLH SL GHP Sbjct: 67 GVKLAGALERYPIEIEGHVCLDVGASTGGFSEVLLQNGARLVFAVDVGHGQLHASLHGHP 126 Query: 128 KIVSMEATDIRSFEGKRLPARPDIVVIDVSFISLKLVLPVALSLAAAPMHLLALIKPQFE 187 +VSME TDIRS +G RLPARPD+VVID SFISLK VLP AL LAA+PM LLALIKPQFE Sbjct: 127 NLVSMEGTDIRSLQGMRLPARPDVVVIDASFISLKAVLPAALDLAASPMWLLALIKPQFE 186 Query: 188 AARKHSKRGVIRNAMVHQEICDDIAAFAASQGCTDIQVFPSSIPGGDGNIEFFLGARRG 246 AARKHSKRG+I++A VHQ +CDDIAA+AAS GC++I VFPSSI GGDGNIEFFLGARRG Sbjct: 187 AARKHSKRGIIKDANVHQAVCDDIAAYAASLGCSEIAVFPSSIAGGDGNIEFFLGARRG 245 >ref|YP_002289870.1| ribosomal RNA large subunit methyltransferase J [Oligotropha carboxidovorans OM5] ref|YP_004632144.1| hemolysin A family protein [Oligotropha carboxidovorans OM5] gb|ACI94005.1| ribosomal RNA large subunit methyltransferase J [Oligotropha carboxidovorans OM5] gb|AEI02327.1| hemolysin A family protein [Oligotropha carboxidovorans OM4] gb|AEI05903.1| hemolysin A family protein [Oligotropha carboxidovorans OM5] Length = 243 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 174/239 (72%), Positives = 197/239 (82%), Gaps = 7/239 (2%) Query: 15 KRIDVLLVERGLFESRARARAAIDAGLVTADGKQIVKASEIVAPGAALSAEPAHPYVSRG 74 KR DVLLVERGLFESRARA+AAI+AGLVTA+GK I K SE + A +SAEPAHP+VSRG Sbjct: 5 KRADVLLVERGLFESRARAQAAIEAGLVTANGKVIAKVSESIPVDADISAEPAHPWVSRG 64 Query: 75 GVKLAGALEHYPIDVEGHVCLDVGX-------VLLANGASLVFAIDVGHGQLHPSLQGHP 127 GVKLA ALEHYP+D+E HVC+DVG VLLANGASLVFAIDVG QLHPSL+G+P Sbjct: 65 GVKLAAALEHYPLDIEDHVCVDVGASTGGFTEVLLANGASLVFAIDVGTAQLHPSLRGNP 124 Query: 128 KIVSMEATDIRSFEGKRLPARPDIVVIDVSFISLKLVLPVALSLAAAPMHLLALIKPQFE 187 KIVS+E TDIRS EG+RL RPD+ VID SFISLKLVLP S AAPM +LALIKPQFE Sbjct: 125 KIVSLENTDIRSLEGRRLEVRPDVAVIDTSFISLKLVLPAVFSFTAAPMQMLALIKPQFE 184 Query: 188 AARKHSKRGVIRNAMVHQEICDDIAAFAASQGCTDIQVFPSSIPGGDGNIEFFLGARRG 246 A R K+G++R+ VH+ ICDDIAAFAA+QGCTDI+VFPS+I GGDGN EFFLGARRG Sbjct: 185 AGRAQVKKGIVRDEAVHRAICDDIAAFAAAQGCTDIEVFPSAIAGGDGNREFFLGARRG 243 >ref|YP_571425.1| hemolysin A [Rhodopseudomonas palustris BisB5] gb|ABE41524.1| hemolysin A [Rhodopseudomonas palustris BisB5] Length = 246 Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 179/245 (73%), Positives = 201/245 (82%), Gaps = 10/245 (4%) Query: 9 NNASAGKRIDVLLVERGLFESRARARAAIDAGLVTADGKQIVKASEIVAPGAALSAEPAH 68 + S KR DV+LVERGLFESRARA+AAI+AGLV ADGK + K SE +A AAL A+PAH Sbjct: 5 TDPSPRKRADVVLVERGLFESRARAQAAIEAGLVFADGKPVTKVSEPIALDAALDAQPAH 64 Query: 69 PYVSRGGVKLAGALEHYPIDVEGHVCLDVGX-------VLLANGASLVFAIDVGHGQLHP 121 P+VSRGGVKLAGALE YPI++E HVCLDVG VLLANGA+LVFA+DVG QLHP Sbjct: 65 PWVSRGGVKLAGALERYPIEIEDHVCLDVGASTGGFTDVLLANGAALVFAVDVGRAQLHP 124 Query: 122 SLQGHPKIVSMEATDIRSFEGKRLPARPDIVVIDVSFISLKLVLPVALSLAAAPMHLLAL 181 SL+GHPKIVSMEATDIRS +GKRLP RPD+VVID SFISLKL+LP AL+LAAAPM LLAL Sbjct: 125 SLRGHPKIVSMEATDIRSLDGKRLPQRPDVVVIDASFISLKLILPTALTLAAAPMSLLAL 184 Query: 182 IKPQFEAARKHSKRGVIRNAMVHQEICDDIAAFAASQGCTDIQVFPSSIPGGDGNIEFFL 241 IKPQFEA KH G++R+A VH+ +C DI A AAS GCTDI VFPSSI GGDGN EFFL Sbjct: 185 IKPQFEAPSKH---GIVRDAAVHRAVCRDIEALAASHGCTDITVFPSSIAGGDGNSEFFL 241 Query: 242 GARRG 246 GARRG Sbjct: 242 GARRG 246 >ref|ZP_08628762.1| FtsJ-like RNA binding methyltransferase [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08567.1| FtsJ-like RNA binding methyltransferase [Bradyrhizobiaceae bacterium SG-6C] Length = 243 Score = 348 bits (892), Expect = 5e-94, Method: Compositional matrix adjust. Identities = 176/239 (73%), Positives = 199/239 (83%), Gaps = 7/239 (2%) Query: 15 KRIDVLLVERGLFESRARARAAIDAGLVTADGKQIVKASEIVAPGAALSAEPAHPYVSRG 74 KR DVLLVERGLF+SRARA+AAI+AG VTA+GK++ KASE + A L AEPAHP+VSRG Sbjct: 5 KRADVLLVERGLFDSRARAQAAIEAGGVTANGKKVTKASETLPADAELVAEPAHPWVSRG 64 Query: 75 GVKLAGALEHYPIDVEGHVCLDVGX-------VLLANGASLVFAIDVGHGQLHPSLQGHP 127 GVKLAGALE YPID+E HVC+DVG VLLA+GASLV+AIDVG GQLHPSL G+ Sbjct: 65 GVKLAGALEQYPIDIEDHVCVDVGASTGGFTEVLLASGASLVYAIDVGRGQLHPSLHGNS 124 Query: 128 KIVSMEATDIRSFEGKRLPARPDIVVIDVSFISLKLVLPVALSLAAAPMHLLALIKPQFE 187 +IVSME TDIRS GKRL RPDI+VIDVSFISLKLVLP L +AAAP HLLALIKPQFE Sbjct: 125 RIVSMEETDIRSLAGKRLEIRPDIIVIDVSFISLKLVLPAVLPIAAAPTHLLALIKPQFE 184 Query: 188 AARKHSKRGVIRNAMVHQEICDDIAAFAASQGCTDIQVFPSSIPGGDGNIEFFLGARRG 246 A RKHSK+G+IR+A VH+ +CDDI AFA GCT+I+VFPSSI GGDGN EFFLGARRG Sbjct: 185 ADRKHSKKGIIRDAPVHKAVCDDIVAFAEDLGCTEIKVFPSSIAGGDGNAEFFLGARRG 243