BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0042.p         (130 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_768847.1| flagellar biosynthesis protein FlhA [Bradyrhizo...   200   6e-50
ref|YP_783169.1| flagellar biosynthesis protein FlhA [Rhodopseud...   191   3e-47
ref|YP_578557.1| flagellar biosynthesis protein FlhA [Nitrobacte...   188   2e-46
ref|YP_570790.1| flagellar biosynthesis protein FlhA [Rhodopseud...   176   1e-42
ref|YP_534068.1| flagellar biosynthesis protein FlhA [Rhodopseud...   163   8e-39

>ref|NP_768847.1| flagellar biosynthesis protein FlhA [Bradyrhizobium japonicum USDA
           110]
 dbj|BAC47472.1| flagellar biosynthesis protein [Bradyrhizobium japonicum USDA 110]
          Length = 747

 Score =  200 bits (508), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 106/148 (71%), Positives = 115/148 (77%), Gaps = 28/148 (18%)

Query: 1   VNASAVPHFRNGGPAAVAQTLGGRSRQSRGRA---------------------------- 32
           ++ASAVPHFRNGGP+A AQT G R RQSRG A                            
Sbjct: 1   MDASAVPHFRNGGPSAAAQTFGARGRQSRGEAATMVDVTAGQGVGSTNAGVPTLTEIVNI 60

Query: 33  LKRGDIALAIGVLTILVVLILPLPSIVLDLFLAVSITVSILILMTSLFIQAPLEFSSFPT 92
           LKRGDIALA+G+LTILVVLILPLP+IVLDLFLA+SIT+SILILMTSLFIQAPLEFS+FPT
Sbjct: 61  LKRGDIALALGILTILVVLILPLPAIVLDLFLAISITLSILILMTSLFIQAPLEFSAFPT 120

Query: 93  ILLISTMLRLSLNMASTRLILSHGHEGT 120
           ILLISTMLRLSLNMASTRLILSHGHEGT
Sbjct: 121 ILLISTMLRLSLNMASTRLILSHGHEGT 148


>ref|YP_783169.1| flagellar biosynthesis protein FlhA [Rhodopseudomonas palustris
           BisA53]
 gb|ABJ08189.1| flagellar biosynthesis protein FlhA [Rhodopseudomonas palustris
           BisA53]
          Length = 744

 Score =  191 bits (485), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 103/150 (68%), Positives = 113/150 (75%), Gaps = 27/150 (18%)

Query: 1   VNASAVPHFRNGGPAAVAQTLGGRSRQSRGRA---------------------------L 33
           ++ASAVP FR GGP+A +QT G R RQSRG A                           L
Sbjct: 1   MDASAVPQFRAGGPSAASQTFGTRGRQSRGEAATMSDVTAGPSGGKGFQVPSLGAIGVML 60

Query: 34  KRGDIALAIGVLTILVVLILPLPSIVLDLFLAVSITVSILILMTSLFIQAPLEFSSFPTI 93
           KRGD+ALA GVLTILVVLILPLPS+VLDLFLA+SIT+SILILMT+LFIQ PLEFSSFPTI
Sbjct: 61  KRGDLALAFGVLTILVVLILPLPSVVLDLFLAISITLSILILMTALFIQTPLEFSSFPTI 120

Query: 94  LLISTMLRLSLNMASTRLILSHGHEGTATS 123
           LLISTMLRLSLNMASTRLILSHGHEGTA +
Sbjct: 121 LLISTMLRLSLNMASTRLILSHGHEGTAAA 150


>ref|YP_578557.1| flagellar biosynthesis protein FlhA [Nitrobacter hamburgensis X14]
 gb|ABE64097.1| flagellar biosynthesis protein FlhA [Nitrobacter hamburgensis X14]
          Length = 745

 Score =  188 bits (478), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/151 (64%), Positives = 114/151 (75%), Gaps = 28/151 (18%)

Query: 1   VNASAVPHFRNGGPAAVAQTLGGRSRQSRGRA---------------------------- 32
           ++ASAVPHFRNGGP+A AQT+G R R SRG                              
Sbjct: 1   MDASAVPHFRNGGPSAAAQTVGARERHSRGETATTMGITAGQGADASASGFPSFSEIGTM 60

Query: 33  LKRGDIALAIGVLTILVVLILPLPSIVLDLFLAVSITVSILILMTSLFIQAPLEFSSFPT 92
           L+RGD+ALA GVLTILVVLILPLPS+VLDLFLA+SIT+SILILMT+LFIQ PLEFS+FPT
Sbjct: 61  LRRGDLALAFGVLTILVVLILPLPSVVLDLFLAISITLSILILMTALFIQTPLEFSAFPT 120

Query: 93  ILLISTMLRLSLNMASTRLILSHGHEGTATS 123
           +LLI+TMLRLSLN+ASTRLILSHGHEG+A +
Sbjct: 121 VLLIATMLRLSLNLASTRLILSHGHEGSAAA 151


>ref|YP_570790.1| flagellar biosynthesis protein FlhA [Rhodopseudomonas palustris
           BisB5]
 gb|ABE40889.1| flagellar biosynthesis protein FlhA [Rhodopseudomonas palustris
           BisB5]
          Length = 744

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 107/147 (72%), Gaps = 24/147 (16%)

Query: 1   VNASAVPHFRNGGPAAVAQTLGGRSRQSR------------------------GRALKRG 36
           ++ASAVPH   G PA  A+  G R RQ                          G  LKRG
Sbjct: 1   MDASAVPHVGAGDPAVAARAFGRRKRQRNKAADMTDTTVGQGPGSKLPSLRDIGTMLKRG 60

Query: 37  DIALAIGVLTILVVLILPLPSIVLDLFLAVSITVSILILMTSLFIQAPLEFSSFPTILLI 96
           D+ALA GVLTILVVLILPLP+IVLDLFLA+SIT+SILILMT+LFIQAPLEFSSFPT+LLI
Sbjct: 61  DLALAFGVLTILVVLILPLPAIVLDLFLAISITLSILILMTALFIQAPLEFSSFPTVLLI 120

Query: 97  STMLRLSLNMASTRLILSHGHEGTATS 123
           STMLRLSLNMASTRLILSHGHEGTA +
Sbjct: 121 STMLRLSLNMASTRLILSHGHEGTAAA 147


>ref|YP_534068.1| flagellar biosynthesis protein FlhA [Rhodopseudomonas palustris
           BisB18]
 gb|ABD89749.1| flagellar biosynthesis protein FlhA [Rhodopseudomonas palustris
           BisB18]
          Length = 711

 Score =  163 bits (412), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 83/94 (88%), Positives = 90/94 (95%)

Query: 30  GRALKRGDIALAIGVLTILVVLILPLPSIVLDLFLAVSITVSILILMTSLFIQAPLEFSS 89
           G  LKRGD+ALA GVLTILVVLI+PLPS+VLDLFLA+SIT+SILILMT+LFIQAPLEFSS
Sbjct: 24  GTMLKRGDLALAFGVLTILVVLIMPLPSVVLDLFLAISITLSILILMTALFIQAPLEFSS 83

Query: 90  FPTILLISTMLRLSLNMASTRLILSHGHEGTATS 123
           FPTILLISTMLRLSLNMASTRLILSHGHEGTA +
Sbjct: 84  FPTILLISTMLRLSLNMASTRLILSHGHEGTAAA 117