BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0115.0031.p (421 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_768862.1| D-amino acid dehydrogenase small subunit [Brady... 747 0.0 ref|YP_485124.1| D-amino acid dehydrogenase small subunit [Rhodo... 613 e-173 ref|YP_004140437.1| D-amino-acid dehydrogenase [Mesorhizobium ci... 608 e-172 ref|NP_104973.1| D-amino acid dehydrogenase small subunit [Mesor... 605 e-171 ref|YP_004155892.1| fad dependent oxidoreductase [Variovorax par... 603 e-170 >ref|NP_768862.1| D-amino acid dehydrogenase small subunit [Bradyrhizobium japonicum USDA 110] sp|Q89T28.1|DADA_BRAJA RecName: Full=D-amino acid dehydrogenase small subunit dbj|BAC47487.1| D-amino acid dehydrogenase, small subunit [Bradyrhizobium japonicum USDA 110] Length = 421 Score = 747 bits (1929), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/421 (85%), Positives = 390/421 (92%) Query: 1 VKVLVLGSGVIGVTTAYYLARAGHEVTVIDRQPKPALETSFANAGEVSPGYSSPWAGPGV 60 +KVL+LGSGVIGVT+AYYLA AGH+VTV+DRQP+PALETSFANAGEVSPGYSSPWAGPGV Sbjct: 1 MKVLILGSGVIGVTSAYYLAGAGHDVTVVDRQPEPALETSFANAGEVSPGYSSPWAGPGV 60 Query: 61 PVKAVKWLLMKHGPLVIRPKLDPVMWLWLLKMLRNCTTARYAVNKSRMIPIAEYSRDCLQ 120 PVKAVKWLLMKHGPLVIRPKLDPVMW+WLLKMLRNCT+ARYAVNKSRMIPIAEYSRDCL+ Sbjct: 61 PVKAVKWLLMKHGPLVIRPKLDPVMWVWLLKMLRNCTSARYAVNKSRMIPIAEYSRDCLR 120 Query: 121 ALRSEIGIRYDERARGTLQLFREQAQLDHTGDDIAVLKQYGVPFEVLGREGCIAAEPALA 180 LR +IGI+YDER++GTLQLFR QAQLD TG+DIAVLKQYGVPFEVLGREGCIA EPALA Sbjct: 121 DLRRDIGIQYDERSQGTLQLFRHQAQLDGTGEDIAVLKQYGVPFEVLGREGCIAVEPALA 180 Query: 181 GVKEKFAGGLRLPHDETGDCHMFTQALALEAEKLGVRFNFNVGIDALNADTTRITGVATS 240 GVKEKFAGGLRLP DETGDCHMFTQALA A+ LGVRF FN GID + D R++GV TS Sbjct: 181 GVKEKFAGGLRLPQDETGDCHMFTQALAKHAQALGVRFMFNTGIDRIVTDGARVSGVVTS 240 Query: 241 AGMMTADAYVLALGSYSPILLRPLGISLPVYPVKGYSITVPIKDASGAPESTVMDESYKV 300 AG++ ADAYVLALGS+S L+ PLGISLPVYPVKGYSITVPIKDASGAPESTVMDESYKV Sbjct: 241 AGVLQADAYVLALGSWSSRLVAPLGISLPVYPVKGYSITVPIKDASGAPESTVMDESYKV 300 Query: 301 AITRLGDRIRVGGTAEISGYSTKLYAARRATLDHSLTDLFPRGGDLPRATFWCGLRPMTP 360 AITRLG+RIRVGGTAEISG+S+KLY ARRATLDHSLTDLFPRGGDL +ATFW GLRPMTP Sbjct: 301 AITRLGNRIRVGGTAEISGFSSKLYDARRATLDHSLTDLFPRGGDLSKATFWSGLRPMTP 360 Query: 361 DGPPVIGATRFANLHLNTGHGTLGWTMACGSGRVLADMLSGKKPEIDTKELSIKRYDHRF 420 DGPPVIG T++ANLHLNTGHGTLGWTM+CGSGRVLADMLSGKKPE+D L++ RY HRF Sbjct: 361 DGPPVIGPTQYANLHLNTGHGTLGWTMSCGSGRVLADMLSGKKPEVDVSALTVDRYAHRF 420 Query: 421 G 421 G Sbjct: 421 G 421 >ref|YP_485124.1| D-amino acid dehydrogenase small subunit [Rhodopseudomonas palustris HaA2] sp|Q2IZZ7.1|DADA_RHOP2 RecName: Full=D-amino acid dehydrogenase small subunit gb|ABD06213.1| D-amino acid dehydrogenase small subunit [Rhodopseudomonas palustris HaA2] Length = 425 Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust. Identities = 290/416 (69%), Positives = 336/416 (80%) Query: 1 VKVLVLGSGVIGVTTAYYLARAGHEVTVIDRQPKPALETSFANAGEVSPGYSSPWAGPGV 60 +KVLV+G+GVIGVTTAYYLA+AG EVTVIDRQP P LETSFANAGEVSPGYSSPWAGPGV Sbjct: 1 MKVLVMGAGVIGVTTAYYLAKAGFEVTVIDRQPGPGLETSFANAGEVSPGYSSPWAGPGV 60 Query: 61 PVKAVKWLLMKHGPLVIRPKLDPVMWLWLLKMLRNCTTARYAVNKSRMIPIAEYSRDCLQ 120 P KA++W+L +HGPLV+RP++DP MW W+++MLRNCT +RYA+NKSRM+ IAEYSRDCL+ Sbjct: 61 PRKAIQWILDRHGPLVVRPQIDPAMWRWVVQMLRNCTASRYALNKSRMVGIAEYSRDCLR 120 Query: 121 ALRSEIGIRYDERARGTLQLFREQAQLDHTGDDIAVLKQYGVPFEVLGREGCIAAEPALA 180 ALR++IGI YDER++GTLQLFR+Q+QLD G D+ +L+QY VPFEVL R GCI AEP LA Sbjct: 121 ALRADIGITYDERSQGTLQLFRKQSQLDAIGGDVEILRQYNVPFEVLDRAGCIRAEPGLA 180 Query: 181 GVKEKFAGGLRLPHDETGDCHMFTQALALEAEKLGVRFNFNVGIDALNADTTRITGVATS 240 V+ F GGLRL DETGDCH+FTQ L A LGV F + I +++A + GV T Sbjct: 181 AVQNSFVGGLRLVDDETGDCHLFTQRLEAAAAALGVNFVYETTIRSIDAQGGAVAGVTTD 240 Query: 241 AGMMTADAYVLALGSYSPILLRPLGISLPVYPVKGYSITVPIKDASGAPESTVMDESYKV 300 G AD YV+ALGS+SP+LLRPLGI +PVYPVKGYSITVPI D +P STVMDESYKV Sbjct: 241 KGRFVADRYVMALGSFSPLLLRPLGIDIPVYPVKGYSITVPIVDEPASPRSTVMDESYKV 300 Query: 301 AITRLGDRIRVGGTAEISGYSTKLYAARRATLDHSLTDLFPRGGDLPRATFWCGLRPMTP 360 AITRLGDRIRVGGTAEI Y +L RR TLD SLTDLFP GDL +ATFW GLRPMTP Sbjct: 301 AITRLGDRIRVGGTAEIGDYQPRLRPNRRVTLDRSLTDLFPGAGDLSQATFWSGLRPMTP 360 Query: 361 DGPPVIGATRFANLHLNTGHGTLGWTMACGSGRVLADMLSGKKPEIDTKELSIKRY 416 DGPP+IG TR ANLHLNTGHGTLGWTMACG+ RV D L +PEID + LS+ RY Sbjct: 361 DGPPIIGPTRLANLHLNTGHGTLGWTMACGAARVAVDQLRSVEPEIDARALSLSRY 416 >ref|YP_004140437.1| D-amino-acid dehydrogenase [Mesorhizobium ciceri biovar biserrulae WSM1271] gb|ADV10387.1| D-amino-acid dehydrogenase [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 418 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 287/416 (68%), Positives = 343/416 (82%) Query: 1 VKVLVLGSGVIGVTTAYYLARAGHEVTVIDRQPKPALETSFANAGEVSPGYSSPWAGPGV 60 +K++VLG GVIGVTTAY+LA AGHEVTV+DRQ PALETSFANAGE+SPGY+SPWAGPG+ Sbjct: 1 MKIMVLGGGVIGVTTAYFLAEAGHEVTVLDRQKGPALETSFANAGEISPGYASPWAGPGI 60 Query: 61 PVKAVKWLLMKHGPLVIRPKLDPVMWLWLLKMLRNCTTARYAVNKSRMIPIAEYSRDCLQ 120 P+KA+KWLLMKHGPLV+RP DP MW WL+KMLRNCT RYA+NK+RM+P+AEYSRD L+ Sbjct: 61 PLKAIKWLLMKHGPLVVRPAFDPHMWTWLIKMLRNCTAERYAINKARMVPLAEYSRDTLK 120 Query: 121 ALRSEIGIRYDERARGTLQLFREQAQLDHTGDDIAVLKQYGVPFEVLGREGCIAAEPALA 180 ALR GI YDER +GTLQLFR Q QLD TG D+ VLK+YGVP+E+L ++GCIAAEP LA Sbjct: 121 ALREATGIAYDERTQGTLQLFRTQKQLDGTGGDVEVLKKYGVPYEILDQDGCIAAEPGLA 180 Query: 181 GVKEKFAGGLRLPHDETGDCHMFTQALALEAEKLGVRFNFNVGIDALNADTTRITGVATS 240 GV+EKF GGLRLPHDETGDC MFT LA GV+F ++V I + RI ++TS Sbjct: 181 GVREKFVGGLRLPHDETGDCKMFTDRLAELCVARGVKFEYDVTIWRVIRSRNRIANLSTS 240 Query: 241 AGMMTADAYVLALGSYSPILLRPLGISLPVYPVKGYSITVPIKDASGAPESTVMDESYKV 300 G TADAYV+ALGSYS +R + +PVYPVKGYSITVPIKDA+ AP STVMDE+YKV Sbjct: 241 KGWKTADAYVMALGSYSAGFMRRVKRPIPVYPVKGYSITVPIKDAAAAPVSTVMDETYKV 300 Query: 301 AITRLGDRIRVGGTAEISGYSTKLYAARRATLDHSLTDLFPRGGDLPRATFWCGLRPMTP 360 AITRLGDRIRVGGTAEISG+ +L+ +RR TL+HS+ DLFP G + ATFWCGLRPMTP Sbjct: 301 AITRLGDRIRVGGTAEISGFDLRLHESRRRTLEHSVGDLFPGAGAMRDATFWCGLRPMTP 360 Query: 361 DGPPVIGATRFANLHLNTGHGTLGWTMACGSGRVLADMLSGKKPEIDTKELSIKRY 416 DGPP+IG T +NL+LNTGHGTLGWTMACGSG+VLAD++S + P+ID ++L+ +RY Sbjct: 361 DGPPLIGRTELSNLYLNTGHGTLGWTMACGSGKVLADIISNRVPDIDVRDLAQERY 416 >ref|NP_104973.1| D-amino acid dehydrogenase small subunit [Mesorhizobium loti MAFF303099] sp|Q98F08.1|DADA1_RHILO RecName: Full=D-amino acid dehydrogenase 1 small subunit dbj|BAB50759.1| D-amino acid dehydrogenase, small subunit [Mesorhizobium loti MAFF303099] Length = 418 Score = 605 bits (1561), Expect = e-171, Method: Compositional matrix adjust. Identities = 285/416 (68%), Positives = 339/416 (81%) Query: 1 VKVLVLGSGVIGVTTAYYLARAGHEVTVIDRQPKPALETSFANAGEVSPGYSSPWAGPGV 60 ++++VLG GVIGVTTAYYLA AGHEVTV+DRQ PALETSFANAGE+SPGY+SPWAGPG+ Sbjct: 1 MQIMVLGGGVIGVTTAYYLAEAGHEVTVLDRQKGPALETSFANAGEISPGYASPWAGPGI 60 Query: 61 PVKAVKWLLMKHGPLVIRPKLDPVMWLWLLKMLRNCTTARYAVNKSRMIPIAEYSRDCLQ 120 P+KA+KWLLMKHGPLV+RP DP MW WL+KMLRNCTT RYA+NKSRM+P+AEYSRD L+ Sbjct: 61 PLKAIKWLLMKHGPLVVRPAFDPHMWTWLVKMLRNCTTERYAINKSRMVPLAEYSRDTLK 120 Query: 121 ALRSEIGIRYDERARGTLQLFREQAQLDHTGDDIAVLKQYGVPFEVLGREGCIAAEPALA 180 ALR GI YDER +GTLQLFR Q QLD TG D+ VLK+YGV +E+L ++GCIAAEPAL Sbjct: 121 ALREATGITYDERTQGTLQLFRTQKQLDGTGGDVEVLKKYGVSYEILDQDGCIAAEPALG 180 Query: 181 GVKEKFAGGLRLPHDETGDCHMFTQALALEAEKLGVRFNFNVGIDALNADTTRITGVATS 240 GV+EKF GGLRLPHDETGDC MFT+ LA GV+F ++ I + R+ ++TS Sbjct: 181 GVREKFVGGLRLPHDETGDCKMFTEKLAELCVARGVKFEYDTTIWRVLRSRNRVANLSTS 240 Query: 241 AGMMTADAYVLALGSYSPILLRPLGISLPVYPVKGYSITVPIKDASGAPESTVMDESYKV 300 G ++AYV+ALGSYS +R + S+PVYPVKGYSITVPIKDA AP STVMDE+YKV Sbjct: 241 KGFKASEAYVMALGSYSAGFMRRMKRSIPVYPVKGYSITVPIKDADVAPVSTVMDETYKV 300 Query: 301 AITRLGDRIRVGGTAEISGYSTKLYAARRATLDHSLTDLFPRGGDLPRATFWCGLRPMTP 360 AITRLGDRIRVGGTAEISG+ +L+ +RR TL+HS+ DLFP G + ATFWCGLRPMTP Sbjct: 301 AITRLGDRIRVGGTAEISGFDLRLHESRRRTLEHSVGDLFPGAGAMREATFWCGLRPMTP 360 Query: 361 DGPPVIGATRFANLHLNTGHGTLGWTMACGSGRVLADMLSGKKPEIDTKELSIKRY 416 DGPP+IG T +NL LNTGHGTLGWTMACGS +VLAD++S K PEID + L+ +RY Sbjct: 361 DGPPLIGRTELSNLFLNTGHGTLGWTMACGSAKVLADIMSNKVPEIDARALAQERY 416 >ref|YP_004155892.1| fad dependent oxidoreductase [Variovorax paradoxus EPS] gb|ADU37781.1| FAD dependent oxidoreductase [Variovorax paradoxus EPS] Length = 419 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 287/417 (68%), Positives = 340/417 (81%), Gaps = 1/417 (0%) Query: 1 VKVLVLGSGVIGVTTAYYLARAGHEVTVIDRQPKPALETSFANAGEVSPGYSSPWAGPGV 60 ++VL+LGSGVIG + AYYLARAGHEVTV++RQP PALETSF NAGEVSPGYS+PWAGPGV Sbjct: 1 MQVLILGSGVIGTSVAYYLARAGHEVTVLERQPAPALETSFGNAGEVSPGYSAPWAGPGV 60 Query: 61 PVKAVKWLLMKHGPLVIRPKLDPVMWLWLLKMLRNCTTARYAVNKSRMIPIAEYSRDCLQ 120 PVKA+KW+LM+H PLV++P LDP MW W L MLRNCT ARY +NK RM+ +AEYSRDCL+ Sbjct: 61 PVKAIKWMLMQHSPLVVKPMLDPAMWRWGLSMLRNCTQARYELNKGRMVRLAEYSRDCLK 120 Query: 121 ALRSEIGIRYDERARGTLQLFREQAQLDHTGDDIAVLKQYGVPFEVLGREGCIAAEPALA 180 ALR++ GI+YDER +GTLQLFR Q QLD T D+ VLK GVP++VL R+GC+ EPALA Sbjct: 121 ALRADTGIQYDERMQGTLQLFRTQQQLDGTAKDVEVLKASGVPYQVLDRDGCLPYEPALA 180 Query: 181 GVKEKFAGGLRLPHDETGDCHMFTQALALEAEKLGVRFNFNVGIDALNADTTR-ITGVAT 239 VKEKF GGLRLP DETGDC FTQALA AE GV F F V I A+ D + +T V T Sbjct: 181 AVKEKFVGGLRLPGDETGDCFKFTQALAKLAEAEGVTFRFGVNIQAIEHDRAKGVTAVRT 240 Query: 240 SAGMMTADAYVLALGSYSPILLRPLGISLPVYPVKGYSITVPIKDASGAPESTVMDESYK 299 G TAD YV+ALGSYSP L++PLGI LPVYPVKG+SITVPI DA GAPESTVMDE++K Sbjct: 241 DQGSFTADRYVVALGSYSPALVKPLGIDLPVYPVKGFSITVPITDAGGAPESTVMDETFK 300 Query: 300 VAITRLGDRIRVGGTAEISGYSTKLYAARRATLDHSLTDLFPRGGDLPRATFWCGLRPMT 359 VA+TRLGDRIRVGGTA++SG+ L RR TL+H +TDLFP+GG++ A+FW GLRPMT Sbjct: 301 VAVTRLGDRIRVGGTAQLSGFDLALNPRRRDTLEHVVTDLFPKGGNVRDASFWTGLRPMT 360 Query: 360 PDGPPVIGATRFANLHLNTGHGTLGWTMACGSGRVLADMLSGKKPEIDTKELSIKRY 416 PDG PVIGATR NL L+TGHGTLGWTMA G+GRV+AD+++GK PEID + L++ RY Sbjct: 361 PDGTPVIGATRIPNLMLSTGHGTLGWTMAAGTGRVMADLVAGKAPEIDMEGLTVARY 417