BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0014.p         (69 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_769794.1| cold shock protein [Bradyrhizobium japonicum US...   125   3e-27
ref|YP_485793.1| cold-shock DNA-binding domain-containing protei...   124   5e-27
ref|YP_004108327.1| cold-shock DNA-binding domain-containing pro...   121   4e-26
ref|YP_001243307.1| cold-shock DNA-binding protein family protei...   121   4e-26
ref|YP_577989.1| cold-shock DNA-binding domain-containing protei...   120   6e-26

>ref|NP_769794.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
 dbj|BAC48419.1| cold shock protein [Bradyrhizobium japonicum USDA 110]
          Length = 69

 Score =  125 bits (313), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 63/69 (91%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          MPTGTVKWFNGQKGFGFIQPDDG NDVFVH+SAVERAGL GLAEGQK++FE K DKMRGK
Sbjct: 1  MPTGTVKWFNGQKGFGFIQPDDGGNDVFVHVSAVERAGLSGLAEGQKVNFEAKTDKMRGK 60

Query: 61 TSAEDLRLA 69
           SAE+L LA
Sbjct: 61 VSAENLSLA 69


>ref|YP_485793.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris HaA2]
 ref|YP_570382.1| cold-shock protein, DNA-binding [Rhodopseudomonas palustris
          BisB5]
 gb|ABD06882.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          HaA2]
 gb|ABE40481.1| cold-shock DNA-binding protein family [Rhodopseudomonas palustris
          BisB5]
          Length = 69

 Score =  124 bits (311), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 63/69 (91%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          MPTGTVKWFNGQKGFGFI P+DG NDVFVHISAVERAGL GLAEGQK++FELK DKMRGK
Sbjct: 1  MPTGTVKWFNGQKGFGFIAPNDGGNDVFVHISAVERAGLSGLAEGQKVNFELKTDKMRGK 60

Query: 61 TSAEDLRLA 69
          TSAE+L L 
Sbjct: 61 TSAENLELV 69


>ref|YP_004108327.1| cold-shock DNA-binding domain-containing protein
          [Rhodopseudomonas palustris DX-1]
 gb|ADU43594.1| cold-shock DNA-binding domain protein [Rhodopseudomonas palustris
          DX-1]
          Length = 69

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/69 (82%), Positives = 63/69 (91%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          M TGTVKWFNGQKGFGFI P DG NDVFVHISAVERAGL GLAEGQ++SFE+K+DKMRGK
Sbjct: 1  MTTGTVKWFNGQKGFGFIAPSDGGNDVFVHISAVERAGLSGLAEGQQVSFEVKVDKMRGK 60

Query: 61 TSAEDLRLA 69
          +SAE+L LA
Sbjct: 61 SSAENLALA 69


>ref|YP_001243307.1| cold-shock DNA-binding protein family protein [Bradyrhizobium sp.
          BTAi1]
 gb|ABQ39401.1| cold-shock DNA-binding protein family [Bradyrhizobium sp. BTAi1]
          Length = 69

 Score =  121 bits (303), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 62/69 (89%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          MP GTVKWFNGQKGFGFIQP DG  DVFVHISAVERAGLGGLAEGQK++F+LK DKMRGK
Sbjct: 1  MPQGTVKWFNGQKGFGFIQPQDGGTDVFVHISAVERAGLGGLAEGQKVNFDLKTDKMRGK 60

Query: 61 TSAEDLRLA 69
           SAE+L LA
Sbjct: 61 VSAENLSLA 69


>ref|YP_577989.1| cold-shock DNA-binding domain-containing protein [Nitrobacter
          hamburgensis X14]
 gb|ABE63529.1| cold-shock DNA-binding protein family [Nitrobacter hamburgensis
          X14]
          Length = 69

 Score =  120 bits (302), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 58/69 (84%), Positives = 63/69 (91%)

Query: 1  MPTGTVKWFNGQKGFGFIQPDDGTNDVFVHISAVERAGLGGLAEGQKLSFELKIDKMRGK 60
          M TGTVKWFNGQKGFGFIQP+DG +DVFVHISAVERAGL GLAEGQK++FELK DKMRGK
Sbjct: 1  MTTGTVKWFNGQKGFGFIQPNDGGSDVFVHISAVERAGLTGLAEGQKVNFELKTDKMRGK 60

Query: 61 TSAEDLRLA 69
           SAE+L LA
Sbjct: 61 VSAENLSLA 69