BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0012.p         (79 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772399.1| hypothetical protein bsr5759 [Bradyrhizobium ja...    74   1e-11
ref|NP_104308.1| hypothetical protein mlr3136 [Mesorhizobium lot...    49   2e-04
ref|ZP_03517822.1| hypothetical protein RetlI_21573 [Rhizobium e...    45   0.003
ref|ZP_00049017.2| COG0334: Glutamate dehydrogenase/leucine dehy...    45   0.003
ref|YP_001979232.1| hypothetical protein RHECIAT_CH0003106 [Rhiz...    45   0.004

>ref|NP_772399.1| hypothetical protein bsr5759 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51024.1| bsr5759 [Bradyrhizobium japonicum USDA 110]
          Length = 80

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 52/75 (69%), Gaps = 3/75 (4%)

Query: 5  YYFDLRDGCGLALDEEGLVLSDLAAVQEEAARALADMVRDSV---RGHNFDQIAIEVRDD 61
          YYFDLRDG  +  DEEG+ L DL AVQEEAARALA +  DSV   +G    +++IEVRD 
Sbjct: 4  YYFDLRDGDEIVPDEEGVELRDLLAVQEEAARALAGLSWDSVQNFKGAQSHRMSIEVRDT 63

Query: 62 DGPVLEVRIAWRIRR 76
           GPV++VR  + I R
Sbjct: 64 YGPVMQVRFVFDISR 78


>ref|NP_104308.1| hypothetical protein mlr3136 [Mesorhizobium loti MAFF303099]
 dbj|BAB50094.1| mlr3136 [Mesorhizobium loti MAFF303099]
          Length = 78

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/60 (40%), Positives = 38/60 (63%)

Query: 4  KYYFDLRDGCGLALDEEGLVLSDLAAVQEEAARALADMVRDSVRGHNFDQIAIEVRDDDG 63
          +YY DL +G GL +D++G V      ++ EA R L D+VRD +  ++   I ++VRD+DG
Sbjct: 3  RYYLDLYNGDGLTVDDDGQVFETRERMRREAIRILPDIVRDEIIENDHTAITVKVRDEDG 62


>ref|ZP_03517822.1| hypothetical protein RetlI_21573 [Rhizobium etli IE4771]
          Length = 81

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 34/65 (52%)

Query: 4  KYYFDLRDGCGLALDEEGLVLSDLAAVQEEAARALADMVRDSVRGHNFDQIAIEVRDDDG 63
          +YYFDL +G G   DE G  L     + +E  R L D+ RD +   +   IA+ VR++ G
Sbjct: 3  RYYFDLHNGEGPTRDEHGTELKSREDIPKEVTRILLDVARDELPASDRTTIAVTVRNESG 62

Query: 64 PVLEV 68
            + V
Sbjct: 63 EPVTV 67


>ref|ZP_00049017.2| COG0334: Glutamate dehydrogenase/leucine dehydrogenase
          [Magnetospirillum magnetotacticum MS-1]
 ref|YP_002963718.1| hypothetical protein MexAM1_META1p2673 [methylobacterium
          extorquens AM1]
 gb|ACS40441.1| conserved hypothetical protein [Methylobacterium extorquens AM1]
          Length = 78

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 4  KYYFDLRDGCGLALDEEGLVLSDLAAVQEEAARALADMVRDSVRGHNFDQIAIEVRDDDG 63
          +Y+FD  D  G   D +GL L+D  AV+EE +  L+++ RD   G +   +   VRD+ G
Sbjct: 3  RYFFDFSDANGKVFDRDGLDLADREAVREEVSATLSELARDLPPGEDRTTLIARVRDEAG 62

Query: 64 PVL 66
           VL
Sbjct: 63 GVL 65


>ref|YP_001979232.1| hypothetical protein RHECIAT_CH0003106 [Rhizobium etli CIAT 652]
 gb|ACE92054.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 81

 Score = 44.7 bits (104), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 34/65 (52%)

Query: 4  KYYFDLRDGCGLALDEEGLVLSDLAAVQEEAARALADMVRDSVRGHNFDQIAIEVRDDDG 63
          +YYFDL +G G   DE G  L     + +E  R L D+ RD +   +   IA+ VRD+ G
Sbjct: 3  RYYFDLHNGEGPTRDEHGTELKSREDIPKEVTRILLDVARDELPATDRMTIAVTVRDERG 62

Query: 64 PVLEV 68
            + V
Sbjct: 63 EAVTV 67