BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0011.p         (77 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772399.1| hypothetical protein bsr5759 [Bradyrhizobium ja...    49   2e-04
ref|ZP_01001214.1| hypothetical protein OB2597_01557 [Oceanicola...    45   0.003
ref|ZP_03517822.1| hypothetical protein RetlI_21573 [Rhizobium e...    44   0.006
ref|ZP_03509616.1| hypothetical protein Retl8_03330 [Rhizobium e...    44   0.012
ref|YP_001979232.1| hypothetical protein RHECIAT_CH0003106 [Rhiz...    43   0.014

>ref|NP_772399.1| hypothetical protein bsr5759 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51024.1| bsr5759 [Bradyrhizobium japonicum USDA 110]
          Length = 80

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)

Query: 5  FYFDIRNGEQLYADKQGIELRDEETAAHEAMQSLLSIAKD---NPSLDKQRLLAFEVRTD 61
          +YFD+R+G+++  D++G+ELRD      EA ++L  ++ D   N    +   ++ EVR  
Sbjct: 4  YYFDLRDGDEIVPDEEGVELRDLLAVQEEAARALAGLSWDSVQNFKGAQSHRMSIEVRDT 63

Query: 62 EGPLFQVSLSLGITR 76
           GP+ QV     I+R
Sbjct: 64 YGPVMQVRFVFDISR 78


>ref|ZP_01001214.1| hypothetical protein OB2597_01557 [Oceanicola batsensis HTCC2597]
 gb|EAQ01534.1| hypothetical protein OB2597_01557 [Oceanicola batsensis HTCC2597]
          Length = 76

 Score = 45.4 bits (106), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 4  RFYFDIRNGEQLYADKQGIELRDEETAAHEAMQSLLSIAKDNPSLDKQRLLAFEVR-TDE 62
          RFYFD+ NGE    D  G EL D + A  EA+  L  IA D    +K   ++  VR +D 
Sbjct: 2  RFYFDVTNGEH-SRDDIGTELADRDEARAEALAVLAPIAGDVFPDEKACSVSVTVRDSDR 60

Query: 63 GPLFQVSLSL 72
           P+FQ SL+L
Sbjct: 61 RPIFQASLAL 70


>ref|ZP_03517822.1| hypothetical protein RetlI_21573 [Rhizobium etli IE4771]
          Length = 81

 Score = 44.3 bits (103), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 4  RFYFDIRNGEQLYADKQGIELRDEETAAHEAMQSLLSIAKDNPSLDKQRLLAFEVRTDEG 63
          R+YFD+ NGE    D+ G EL+  E    E  + LL +A+D      +  +A  VR + G
Sbjct: 3  RYYFDLHNGEGPTRDEHGTELKSREDIPKEVTRILLDVARDELPASDRTTIAVTVRNESG 62

Query: 64 -PLFQVSL 70
           P+   SL
Sbjct: 63 EPVTVASL 70


>ref|ZP_03509616.1| hypothetical protein Retl8_03330 [Rhizobium etli 8C-3]
          Length = 81

 Score = 43.5 bits (101), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 3/69 (4%)

Query: 4  RFYFDIRNGEQLYADKQGIELRDEETAAHEAMQSLLSIAKDN-PSLDKQRLLAFEVRTDE 62
          R+YFD+ NGE    D+ G EL+  E    E  + LL +A+D  P+ D+   +A  VR + 
Sbjct: 3  RYYFDLHNGEGPTRDEHGTELKSREDIPKEVTRILLDVARDELPATDRM-TIAVTVRDER 61

Query: 63 G-PLFQVSL 70
          G P+   SL
Sbjct: 62 GEPVTVASL 70


>ref|YP_001979232.1| hypothetical protein RHECIAT_CH0003106 [Rhizobium etli CIAT 652]
 gb|ACE92054.1| hypothetical conserved protein [Rhizobium etli CIAT 652]
          Length = 81

 Score = 43.1 bits (100), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 4  RFYFDIRNGEQLYADKQGIELRDEETAAHEAMQSLLSIAKDN-PSLDKQRLLAFEVRTDE 62
          R+YFD+ NGE    D+ G EL+  E    E  + LL +A+D  P+ D+   +A  VR + 
Sbjct: 3  RYYFDLHNGEGPTRDEHGTELKSREDIPKEVTRILLDVARDELPATDRM-TIAVTVRDER 61

Query: 63 GPLFQVS 69
          G    V+
Sbjct: 62 GEAVTVA 68