BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0115.0009.p         (101 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAC45630.1| 30S ribosomal protein S21 [Bradyrhizobium japoni...   129   1e-28
ref|NP_767005.2| 30S ribosomal protein S21 [Bradyrhizobium japon...   128   2e-28
ref|YP_001758164.1| 30S ribosomal protein S21 [Methylobacterium ...   126   1e-27
ref|YP_001993499.1| 30S ribosomal protein S21 [Rhodopseudomonas ...   122   1e-26
ref|YP_004108302.1| 30S ribosomal protein S21 [Rhodopseudomonas ...   122   2e-26

>dbj|BAC45630.1| 30S ribosomal protein S21 [Bradyrhizobium japonicum USDA 110]
          Length = 106

 Score =  129 bits (325), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 77/85 (90%), Gaps = 1/85 (1%)

Query: 1  LQVLVRDNNIDQALRVLKKRLQREGVFREMKRRRSFEKPSEKRAREKSEAVRRARKLARK 60
          LQVLVRDNN+DQALRVLKK++QREGVFREMK+RRS+EKPSE++ REKSEA+RRARKLARK
Sbjct: 15 LQVLVRDNNVDQALRVLKKKMQREGVFREMKQRRSYEKPSERKTREKSEAIRRARKLARK 74

Query: 61 QAIRDGLIAAPPRKPKFPASKPSAP 85
          QAIR+GL+ APP+K K P  KP  P
Sbjct: 75 QAIREGLLPAPPKK-KLPERKPPLP 98


>ref|NP_767005.2| 30S ribosomal protein S21 [Bradyrhizobium japonicum USDA 110]
 sp|Q89XE9.2|RS211_BRAJA RecName: Full=30S ribosomal protein S21 1
          Length = 92

 Score =  128 bits (322), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/85 (76%), Positives = 77/85 (90%), Gaps = 1/85 (1%)

Query: 1  LQVLVRDNNIDQALRVLKKRLQREGVFREMKRRRSFEKPSEKRAREKSEAVRRARKLARK 60
          +QVLVRDNN+DQALRVLKK++QREGVFREMK+RRS+EKPSE++ REKSEA+RRARKLARK
Sbjct: 1  MQVLVRDNNVDQALRVLKKKMQREGVFREMKQRRSYEKPSERKTREKSEAIRRARKLARK 60

Query: 61 QAIRDGLIAAPPRKPKFPASKPSAP 85
          QAIR+GL+ APP+K K P  KP  P
Sbjct: 61 QAIREGLLPAPPKK-KLPERKPPLP 84


>ref|YP_001758164.1| 30S ribosomal protein S21 [Methylobacterium radiotolerans JCM
          2831]
 gb|ACB27481.1| ribosomal protein S21 [Methylobacterium radiotolerans JCM 2831]
          Length = 111

 Score =  126 bits (317), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/100 (67%), Positives = 83/100 (83%), Gaps = 4/100 (4%)

Query: 1  LQVLVRDNNIDQALRVLKKRLQREGVFREMKRRRSFEKPSEKRAREKSEAVRRARKLARK 60
          +QVLVRDNN+DQALRVLKK++QREG+FREMK+R+++EKPS ++AREK+EAVRRARK ARK
Sbjct: 1  MQVLVRDNNVDQALRVLKKKMQREGIFREMKQRKAYEKPSVRKAREKAEAVRRARKQARK 60

Query: 61 QAIRDGLIAAPPRKPKFPAS--KPSAPRQSPQSPQQAGGT 98
           AIR+GLIAAP  KP+FPA   +P  P  SP + Q  GG 
Sbjct: 61 TAIREGLIAAPKPKPRFPAGGRRPGFP--SPSAAQGQGGN 98


>ref|YP_001993499.1| 30S ribosomal protein S21 [Rhodopseudomonas palustris TIE-1]
 gb|ACF03024.1| ribosomal protein S21 [Rhodopseudomonas palustris TIE-1]
          Length = 91

 Score =  122 bits (307), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 60/77 (77%), Positives = 73/77 (94%)

Query: 1  LQVLVRDNNIDQALRVLKKRLQREGVFREMKRRRSFEKPSEKRAREKSEAVRRARKLARK 60
          +QV+VRDNN+DQALRVLKK++QREGVFREMK+RRS+EKPSE++ REKSEAVRRARKLARK
Sbjct: 1  MQVIVRDNNVDQALRVLKKKMQREGVFREMKQRRSYEKPSERKTREKSEAVRRARKLARK 60

Query: 61 QAIRDGLIAAPPRKPKF 77
          +AIR+GL+ APP+K  F
Sbjct: 61 KAIREGLLPAPPKKKPF 77


>ref|YP_004108302.1| 30S ribosomal protein S21 [Rhodopseudomonas palustris DX-1]
 gb|ADU43569.1| ribosomal protein S21 [Rhodopseudomonas palustris DX-1]
          Length = 91

 Score =  122 bits (306), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/85 (74%), Positives = 76/85 (89%), Gaps = 1/85 (1%)

Query: 1  LQVLVRDNNIDQALRVLKKRLQREGVFREMKRRRSFEKPSEKRAREKSEAVRRARKLARK 60
          +QVLVRDNN+DQALRVLKK++QREGVFREMK+RRS+EKPSE++ RE+SEAVRRARKLARK
Sbjct: 1  MQVLVRDNNVDQALRVLKKKMQREGVFREMKQRRSYEKPSERKTRERSEAVRRARKLARK 60

Query: 61 QAIRDGLIAAPPRKPKFPASKPSAP 85
          +AIR+GL+ APP+K K    KP  P
Sbjct: 61 KAIREGLLPAPPKK-KIVERKPPLP 84